Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1106

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1105 and Psyr_1106 are separated by 121 nucleotidesPsyr_1106 and Psyr_1107 are separated by 59 nucleotidesPsyr_1107 and Psyr_1108 are separated by 137 nucleotides Psyr_1105: Psyr_1105 - TonB-dependent hemoglobin/transferrin/lactoferrin receptor:TonB-dependent heme/hemoglobin receptor, at 1,250,431 to 1,253,010 _1105 Psyr_1106: Psyr_1106 - FecR protein, at 1,253,132 to 1,254,097 _1106 Psyr_1107: Psyr_1107 - Sigma-70 region 2, at 1,254,157 to 1,254,720 _1107 Psyr_1108: Psyr_1108 - glyceraldehyde-3-phosphate dehydrogenase, at 1,254,858 to 1,255,859 _1108 Position (kb) 1253 1254 1255Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1252.232 kb on + strand, within Psyr_1105at 1252.232 kb on + strand, within Psyr_1105at 1252.232 kb on + strand, within Psyr_1105at 1252.232 kb on + strand, within Psyr_1105at 1252.233 kb on - strand, within Psyr_1105at 1252.233 kb on - strand, within Psyr_1105at 1252.233 kb on - strand, within Psyr_1105at 1252.233 kb on - strand, within Psyr_1105at 1252.235 kb on + strand, within Psyr_1105at 1252.235 kb on + strand, within Psyr_1105at 1252.235 kb on + strand, within Psyr_1105at 1252.235 kb on + strand, within Psyr_1105at 1252.235 kb on + strand, within Psyr_1105at 1252.236 kb on - strand, within Psyr_1105at 1252.236 kb on - strand, within Psyr_1105at 1252.236 kb on - strand, within Psyr_1105at 1252.236 kb on - strand, within Psyr_1105at 1252.236 kb on - strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.431 kb on + strand, within Psyr_1105at 1252.431 kb on + strand, within Psyr_1105at 1252.432 kb on - strand, within Psyr_1105at 1252.432 kb on - strand, within Psyr_1105at 1252.433 kb on + strand, within Psyr_1105at 1252.433 kb on + strand, within Psyr_1105at 1252.434 kb on - strand, within Psyr_1105at 1252.434 kb on - strand, within Psyr_1105at 1252.546 kb on + strand, within Psyr_1105at 1252.546 kb on + strand, within Psyr_1105at 1252.547 kb on - strand, within Psyr_1105at 1252.547 kb on - strand, within Psyr_1105at 1252.547 kb on - strand, within Psyr_1105at 1252.789 kb on + strandat 1252.789 kb on + strandat 1252.789 kb on + strandat 1252.790 kb on - strandat 1252.863 kb on - strandat 1252.863 kb on - strandat 1252.891 kb on - strandat 1252.891 kb on - strandat 1252.965 kb on + strandat 1252.965 kb on + strandat 1253.041 kb on + strandat 1253.041 kb on + strandat 1253.042 kb on - strandat 1253.042 kb on - strandat 1253.048 kb on + strandat 1253.049 kb on - strandat 1253.049 kb on - strandat 1253.049 kb on - strandat 1253.091 kb on + strandat 1253.092 kb on - strandat 1253.227 kb on - strandat 1253.287 kb on - strand, within Psyr_1106at 1253.310 kb on - strand, within Psyr_1106at 1253.310 kb on - strand, within Psyr_1106at 1253.336 kb on + strand, within Psyr_1106at 1253.336 kb on + strand, within Psyr_1106at 1253.495 kb on + strand, within Psyr_1106at 1253.496 kb on - strand, within Psyr_1106at 1253.496 kb on - strand, within Psyr_1106at 1253.496 kb on - strand, within Psyr_1106at 1253.625 kb on + strand, within Psyr_1106at 1253.625 kb on + strand, within Psyr_1106at 1253.626 kb on - strand, within Psyr_1106at 1253.626 kb on - strand, within Psyr_1106at 1253.626 kb on - strand, within Psyr_1106at 1254.124 kb on + strandat 1254.131 kb on - strandat 1254.188 kb on - strandat 1254.188 kb on - strandat 1254.188 kb on - strandat 1254.188 kb on - strandat 1254.223 kb on + strand, within Psyr_1107at 1254.223 kb on + strand, within Psyr_1107at 1254.223 kb on + strand, within Psyr_1107at 1254.224 kb on - strand, within Psyr_1107at 1254.266 kb on + strand, within Psyr_1107at 1254.267 kb on - strand, within Psyr_1107at 1254.267 kb on - strand, within Psyr_1107at 1254.267 kb on - strand, within Psyr_1107at 1254.618 kb on + strand, within Psyr_1107at 1254.618 kb on + strand, within Psyr_1107at 1254.618 kb on + strand, within Psyr_1107at 1254.618 kb on + strand, within Psyr_1107at 1254.619 kb on - strand, within Psyr_1107at 1254.619 kb on - strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.623 kb on - strand, within Psyr_1107at 1254.623 kb on - strand, within Psyr_1107at 1254.623 kb on - strand, within Psyr_1107at 1254.749 kb on - strandat 1254.752 kb on + strandat 1254.752 kb on + strandat 1254.752 kb on + strandat 1254.752 kb on + strandat 1254.752 kb on + strandat 1254.753 kb on - strandat 1254.753 kb on - strandat 1254.753 kb on - strandat 1254.753 kb on - strandat 1254.753 kb on - strandat 1254.859 kb on + strandat 1254.936 kb on + strandat 1254.937 kb on - strandat 1254.937 kb on - strandat 1254.937 kb on - strandat 1254.937 kb on - strandat 1254.937 kb on - strandat 1255.037 kb on - strand, within Psyr_1108

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
1,252,232 + Psyr_1105 0.70 +2.3
1,252,232 + Psyr_1105 0.70 -4.0
1,252,232 + Psyr_1105 0.70 -3.2
1,252,232 + Psyr_1105 0.70 -2.2
1,252,233 - Psyr_1105 0.70 -3.0
1,252,233 - Psyr_1105 0.70 -1.4
1,252,233 - Psyr_1105 0.70 -1.8
1,252,233 - Psyr_1105 0.70 -0.0
1,252,235 + Psyr_1105 0.70 +2.0
1,252,235 + Psyr_1105 0.70 +0.1
1,252,235 + Psyr_1105 0.70 -0.4
1,252,235 + Psyr_1105 0.70 -0.3
1,252,235 + Psyr_1105 0.70 +0.0
1,252,236 - Psyr_1105 0.70 +1.5
1,252,236 - Psyr_1105 0.70 -1.4
1,252,236 - Psyr_1105 0.70 -0.6
1,252,236 - Psyr_1105 0.70 -0.2
1,252,236 - Psyr_1105 0.70 -1.4
1,252,328 + Psyr_1105 0.74 -2.3
1,252,328 + Psyr_1105 0.74 +4.2
1,252,328 + Psyr_1105 0.74 +1.9
1,252,328 + Psyr_1105 0.74 +1.0
1,252,328 + Psyr_1105 0.74 -2.7
1,252,328 + Psyr_1105 0.74 -1.7
1,252,328 + Psyr_1105 0.74 +3.7
1,252,328 + Psyr_1105 0.74 -1.8
1,252,328 + Psyr_1105 0.74 +4.5
1,252,329 - Psyr_1105 0.74 -2.3
1,252,329 - Psyr_1105 0.74 +1.5
1,252,329 - Psyr_1105 0.74 -1.0
1,252,329 - Psyr_1105 0.74 +3.3
1,252,329 - Psyr_1105 0.74 +0.6
1,252,329 - Psyr_1105 0.74 -2.7
1,252,329 - Psyr_1105 0.74 -1.8
1,252,329 - Psyr_1105 0.74 +1.0
1,252,329 - Psyr_1105 0.74 -4.3
1,252,329 - Psyr_1105 0.74 -3.6
1,252,431 + Psyr_1105 0.78 +1.1
1,252,431 + Psyr_1105 0.78 -1.6
1,252,432 - Psyr_1105 0.78 -0.4
1,252,432 - Psyr_1105 0.78 +0.1
1,252,433 + Psyr_1105 0.78 +2.3
1,252,433 + Psyr_1105 0.78 +0.6
1,252,434 - Psyr_1105 0.78 +1.0
1,252,434 - Psyr_1105 0.78 +0.2
1,252,546 + Psyr_1105 0.82 +0.3
1,252,546 + Psyr_1105 0.82 +1.5
1,252,547 - Psyr_1105 0.82 -0.3
1,252,547 - Psyr_1105 0.82 -0.0
1,252,547 - Psyr_1105 0.82 -2.1
1,252,789 + -3.6
1,252,789 + -4.3
1,252,789 + -1.2
1,252,790 - +3.3
1,252,863 - +0.2
1,252,863 - +4.7
1,252,891 - -2.6
1,252,891 - -0.4
1,252,965 + +1.0
1,252,965 + +3.1
1,253,041 + +1.0
1,253,041 + +1.5
1,253,042 - -1.8
1,253,042 - -1.2
1,253,048 + -3.5
1,253,049 - -0.2
1,253,049 - -1.6
1,253,049 - +3.0
1,253,091 + -2.9
1,253,092 - -1.2
1,253,227 - -2.1
1,253,287 - Psyr_1106 0.16 +2.8
1,253,310 - Psyr_1106 0.18 -0.3
1,253,310 - Psyr_1106 0.18 -0.0
1,253,336 + Psyr_1106 0.21 -0.0
1,253,336 + Psyr_1106 0.21 -1.7
1,253,495 + Psyr_1106 0.38 +0.9
1,253,496 - Psyr_1106 0.38 -0.5
1,253,496 - Psyr_1106 0.38 +1.6
1,253,496 - Psyr_1106 0.38 -3.5
1,253,625 + Psyr_1106 0.51 +0.0
1,253,625 + Psyr_1106 0.51 +4.2
1,253,626 - Psyr_1106 0.51 +2.0
1,253,626 - Psyr_1106 0.51 -0.6
1,253,626 - Psyr_1106 0.51 -2.0
1,254,124 + +0.3
1,254,131 - -2.1
1,254,188 - +1.5
1,254,188 - -0.0
1,254,188 - +0.4
1,254,188 - -1.7
1,254,223 + Psyr_1107 0.12 +2.0
1,254,223 + Psyr_1107 0.12 +2.0
1,254,223 + Psyr_1107 0.12 +1.5
1,254,224 - Psyr_1107 0.12 -2.4
1,254,266 + Psyr_1107 0.19 -0.2
1,254,267 - Psyr_1107 0.20 -0.9
1,254,267 - Psyr_1107 0.20 +2.3
1,254,267 - Psyr_1107 0.20 +3.3
1,254,618 + Psyr_1107 0.82 -1.3
1,254,618 + Psyr_1107 0.82 -0.7
1,254,618 + Psyr_1107 0.82 -2.3
1,254,618 + Psyr_1107 0.82 -1.2
1,254,619 - Psyr_1107 0.82 +2.8
1,254,619 - Psyr_1107 0.82 -4.0
1,254,622 + Psyr_1107 0.82 -0.0
1,254,622 + Psyr_1107 0.82 -1.2
1,254,622 + Psyr_1107 0.82 -1.3
1,254,622 + Psyr_1107 0.82 +4.0
1,254,622 + Psyr_1107 0.82 +3.7
1,254,622 + Psyr_1107 0.82 +3.1
1,254,623 - Psyr_1107 0.83 -3.5
1,254,623 - Psyr_1107 0.83 -1.8
1,254,623 - Psyr_1107 0.83 -0.0
1,254,749 - -0.0
1,254,752 + -4.3
1,254,752 + -2.5
1,254,752 + -1.9
1,254,752 + -2.9
1,254,752 + +1.5
1,254,753 - -4.1
1,254,753 - -1.0
1,254,753 - -3.9
1,254,753 - -1.3
1,254,753 - -2.1
1,254,859 + -1.8
1,254,936 + -1.9
1,254,937 - -1.8
1,254,937 - +4.1
1,254,937 - -0.0
1,254,937 - -0.7
1,254,937 - +4.2
1,255,037 - Psyr_1108 0.18 -2.3

Or see this region's nucleotide sequence