Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1096 and Psyr_1097 are separated by 10 nucleotides Psyr_1097 and Psyr_1098 are separated by 325 nucleotides Psyr_1098 and Psyr_1099 are separated by 9 nucleotides Psyr_1099 and Psyr_1100 overlap by 16 nucleotides
Psyr_1096: Psyr_1096 - glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit, at 1,238,600 to 1,241,464
_1096
Psyr_1097: Psyr_1097 - glycine cleavage system H protein, at 1,241,475 to 1,241,858
_1097
Psyr_1098: Psyr_1098 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 1,242,184 to 1,244,301
_1098
Psyr_1099: Psyr_1099 - Response regulator receiver, at 1,244,311 to 1,244,700
_1099
Psyr_1100: Psyr_1100 - PAS/PAC sensor signal transduction histidine kinase, at 1,244,685 to 1,246,415
_1100
Position (kb) 1242
1243
1244
1245 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.203 kb on - strand at 1241.203 kb on - strand at 1241.217 kb on + strand at 1241.217 kb on + strand at 1241.217 kb on + strand at 1241.217 kb on + strand at 1241.218 kb on - strand at 1241.218 kb on - strand at 1241.218 kb on - strand at 1241.719 kb on + strand, within Psyr_1097 at 1241.719 kb on + strand, within Psyr_1097 at 1241.720 kb on - strand, within Psyr_1097 at 1241.858 kb on + strand at 1241.858 kb on + strand at 1241.858 kb on + strand at 1241.859 kb on - strand at 1241.901 kb on + strand at 1241.901 kb on + strand at 1241.901 kb on + strand at 1241.902 kb on - strand at 1241.916 kb on - strand at 1241.916 kb on - strand at 1241.964 kb on + strand at 1242.024 kb on - strand at 1242.024 kb on - strand at 1242.024 kb on - strand at 1242.024 kb on - strand at 1242.033 kb on + strand at 1242.141 kb on - strand at 1242.151 kb on - strand at 1242.154 kb on - strand at 1242.257 kb on + strand at 1242.258 kb on - strand at 1242.444 kb on + strand, within Psyr_1098 at 1242.462 kb on - strand, within Psyr_1098 at 1242.504 kb on + strand, within Psyr_1098 at 1242.504 kb on + strand, within Psyr_1098 at 1242.805 kb on + strand, within Psyr_1098 at 1242.805 kb on + strand, within Psyr_1098 at 1242.806 kb on - strand, within Psyr_1098 at 1242.871 kb on - strand, within Psyr_1098 at 1242.903 kb on - strand, within Psyr_1098 at 1242.993 kb on + strand, within Psyr_1098 at 1242.994 kb on - strand, within Psyr_1098 at 1242.995 kb on + strand, within Psyr_1098 at 1242.995 kb on + strand, within Psyr_1098 at 1242.995 kb on + strand, within Psyr_1098 at 1242.995 kb on + strand, within Psyr_1098 at 1242.995 kb on + strand, within Psyr_1098 at 1242.996 kb on - strand, within Psyr_1098 at 1242.996 kb on - strand, within Psyr_1098 at 1243.004 kb on + strand, within Psyr_1098 at 1243.004 kb on + strand, within Psyr_1098 at 1243.004 kb on + strand, within Psyr_1098 at 1243.005 kb on - strand, within Psyr_1098 at 1243.005 kb on - strand, within Psyr_1098 at 1243.046 kb on + strand, within Psyr_1098 at 1243.047 kb on - strand, within Psyr_1098 at 1243.047 kb on - strand, within Psyr_1098 at 1243.047 kb on - strand, within Psyr_1098 at 1243.138 kb on + strand, within Psyr_1098 at 1243.138 kb on + strand, within Psyr_1098 at 1243.139 kb on - strand, within Psyr_1098 at 1243.139 kb on - strand, within Psyr_1098 at 1243.139 kb on - strand, within Psyr_1098 at 1243.139 kb on - strand, within Psyr_1098 at 1243.473 kb on - strand, within Psyr_1098 at 1243.667 kb on + strand, within Psyr_1098 at 1243.667 kb on + strand, within Psyr_1098 at 1243.668 kb on - strand, within Psyr_1098 at 1243.668 kb on - strand, within Psyr_1098 at 1243.668 kb on - strand, within Psyr_1098 at 1243.911 kb on - strand, within Psyr_1098 at 1243.989 kb on - strand at 1244.063 kb on - strand, within Psyr_1098 at 1244.063 kb on - strand, within Psyr_1098 at 1244.063 kb on - strand, within Psyr_1098 at 1244.063 kb on - strand, within Psyr_1098 at 1244.064 kb on + strand, within Psyr_1098 at 1244.317 kb on - strand at 1244.379 kb on - strand, within Psyr_1099 at 1244.399 kb on + strand, within Psyr_1099 at 1244.399 kb on + strand, within Psyr_1099 at 1244.399 kb on + strand, within Psyr_1099 at 1244.399 kb on + strand, within Psyr_1099 at 1244.399 kb on + strand, within Psyr_1099 at 1244.399 kb on + strand, within Psyr_1099 at 1244.400 kb on - strand, within Psyr_1099 at 1244.400 kb on - strand, within Psyr_1099 at 1244.400 kb on - strand, within Psyr_1099 at 1244.400 kb on - strand, within Psyr_1099 at 1244.400 kb on - strand, within Psyr_1099 at 1244.400 kb on - strand, within Psyr_1099 at 1244.400 kb on - strand, within Psyr_1099 at 1244.400 kb on - strand, within Psyr_1099 at 1244.644 kb on + strand, within Psyr_1099 at 1244.644 kb on + strand, within Psyr_1099 at 1244.645 kb on - strand, within Psyr_1099 at 1244.645 kb on - strand, within Psyr_1099 at 1244.645 kb on - strand, within Psyr_1099 at 1244.645 kb on - strand, within Psyr_1099 at 1244.645 kb on - strand, within Psyr_1099 at 1244.645 kb on - strand, within Psyr_1099
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 1,241,199 + -1.5 1,241,199 + -2.5 1,241,199 + +2.8 1,241,199 + +2.0 1,241,199 + +2.3 1,241,199 + +1.0 1,241,199 + -2.6 1,241,199 + -0.1 1,241,199 + +1.4 1,241,199 + -2.6 1,241,200 - -2.7 1,241,200 - -3.4 1,241,200 - -0.0 1,241,200 - +1.0 1,241,200 - +2.0 1,241,200 - -0.0 1,241,200 - -1.5 1,241,200 - -0.4 1,241,200 - -2.3 1,241,200 - +3.4 1,241,200 - -2.4 1,241,200 - -1.8 1,241,200 - -2.0 1,241,203 - +3.3 1,241,203 - -1.8 1,241,217 + -4.5 1,241,217 + -2.6 1,241,217 + -0.0 1,241,217 + -0.0 1,241,218 - +1.5 1,241,218 - -0.0 1,241,218 - -3.4 1,241,719 + Psyr_1097 0.64 -5.3 1,241,719 + Psyr_1097 0.64 -2.3 1,241,720 - Psyr_1097 0.64 -2.7 1,241,858 + -3.2 1,241,858 + -2.1 1,241,858 + -1.6 1,241,859 - -0.0 1,241,901 + -1.9 1,241,901 + -1.9 1,241,901 + +2.8 1,241,902 - -1.6 1,241,916 - -3.6 1,241,916 - -2.2 1,241,964 + -1.8 1,242,024 - +1.5 1,242,024 - +2.0 1,242,024 - -3.5 1,242,024 - -2.9 1,242,033 + +1.5 1,242,141 - +1.8 1,242,151 - -1.6 1,242,154 - -0.0 1,242,257 + -1.3 1,242,258 - -0.7 1,242,444 + Psyr_1098 0.12 +1.1 1,242,462 - Psyr_1098 0.13 -0.0 1,242,504 + Psyr_1098 0.15 -2.3 1,242,504 + Psyr_1098 0.15 -0.2 1,242,805 + Psyr_1098 0.29 -2.5 1,242,805 + Psyr_1098 0.29 -0.0 1,242,806 - Psyr_1098 0.29 +2.5 1,242,871 - Psyr_1098 0.32 -0.3 1,242,903 - Psyr_1098 0.34 -0.3 1,242,993 + Psyr_1098 0.38 -0.2 1,242,994 - Psyr_1098 0.38 +2.0 1,242,995 + Psyr_1098 0.38 -1.4 1,242,995 + Psyr_1098 0.38 -2.7 1,242,995 + Psyr_1098 0.38 +2.5 1,242,995 + Psyr_1098 0.38 +2.3 1,242,995 + Psyr_1098 0.38 -0.2 1,242,996 - Psyr_1098 0.38 -4.5 1,242,996 - Psyr_1098 0.38 +3.0 1,243,004 + Psyr_1098 0.39 +2.3 1,243,004 + Psyr_1098 0.39 +1.9 1,243,004 + Psyr_1098 0.39 +2.0 1,243,005 - Psyr_1098 0.39 +2.0 1,243,005 - Psyr_1098 0.39 -3.2 1,243,046 + Psyr_1098 0.41 -2.7 1,243,047 - Psyr_1098 0.41 -3.1 1,243,047 - Psyr_1098 0.41 +1.5 1,243,047 - Psyr_1098 0.41 -0.0 1,243,138 + Psyr_1098 0.45 +0.2 1,243,138 + Psyr_1098 0.45 -0.6 1,243,139 - Psyr_1098 0.45 +2.3 1,243,139 - Psyr_1098 0.45 +2.3 1,243,139 - Psyr_1098 0.45 +3.0 1,243,139 - Psyr_1098 0.45 +0.4 1,243,473 - Psyr_1098 0.61 -2.3 1,243,667 + Psyr_1098 0.70 +3.0 1,243,667 + Psyr_1098 0.70 +1.5 1,243,668 - Psyr_1098 0.70 -0.0 1,243,668 - Psyr_1098 0.70 -1.0 1,243,668 - Psyr_1098 0.70 -1.4 1,243,911 - Psyr_1098 0.82 +2.5 1,243,989 - -0.0 1,244,063 - Psyr_1098 0.89 +4.3 1,244,063 - Psyr_1098 0.89 -0.9 1,244,063 - Psyr_1098 0.89 -2.0 1,244,063 - Psyr_1098 0.89 +2.0 1,244,064 + Psyr_1098 0.89 -1.3 1,244,317 - +0.6 1,244,379 - Psyr_1099 0.17 +1.2 1,244,399 + Psyr_1099 0.23 -4.1 1,244,399 + Psyr_1099 0.23 -2.4 1,244,399 + Psyr_1099 0.23 -0.5 1,244,399 + Psyr_1099 0.23 -2.0 1,244,399 + Psyr_1099 0.23 -0.0 1,244,399 + Psyr_1099 0.23 +2.0 1,244,400 - Psyr_1099 0.23 +2.0 1,244,400 - Psyr_1099 0.23 -0.0 1,244,400 - Psyr_1099 0.23 -2.9 1,244,400 - Psyr_1099 0.23 -2.1 1,244,400 - Psyr_1099 0.23 +4.3 1,244,400 - Psyr_1099 0.23 -2.5 1,244,400 - Psyr_1099 0.23 -4.7 1,244,400 - Psyr_1099 0.23 +0.0 1,244,644 + Psyr_1099 0.85 +3.0 1,244,644 + Psyr_1099 0.85 -0.0 1,244,645 - Psyr_1099 0.86 -2.6 1,244,645 - Psyr_1099 0.86 +3.0 1,244,645 - Psyr_1099 0.86 +2.5 1,244,645 - Psyr_1099 0.86 -1.3 1,244,645 - Psyr_1099 0.86 -1.7 1,244,645 - Psyr_1099 0.86 +2.3
Or see this region's nucleotide sequence