Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1096

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1095 and Psyr_1096 are separated by 81 nucleotidesPsyr_1096 and Psyr_1097 are separated by 10 nucleotidesPsyr_1097 and Psyr_1098 are separated by 325 nucleotides Psyr_1095: Psyr_1095 - Glycine cleavage system T protein, at 1,237,394 to 1,238,518 _1095 Psyr_1096: Psyr_1096 - glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit, at 1,238,600 to 1,241,464 _1096 Psyr_1097: Psyr_1097 - glycine cleavage system H protein, at 1,241,475 to 1,241,858 _1097 Psyr_1098: Psyr_1098 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 1,242,184 to 1,244,301 _1098 Position (kb) 1238 1239 1240 1241 1242Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1237.751 kb on + strand, within Psyr_1095at 1237.853 kb on - strand, within Psyr_1095at 1237.944 kb on + strand, within Psyr_1095at 1237.945 kb on - strand, within Psyr_1095at 1237.945 kb on - strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095at 1238.418 kb on + strandat 1238.544 kb on + strandat 1238.613 kb on + strandat 1238.614 kb on - strandat 1238.691 kb on + strandat 1238.691 kb on + strandat 1238.691 kb on + strandat 1238.691 kb on + strandat 1238.692 kb on - strandat 1238.692 kb on - strandat 1238.692 kb on - strandat 1238.692 kb on - strandat 1238.692 kb on - strandat 1238.692 kb on - strandat 1238.722 kb on - strandat 1238.722 kb on - strandat 1238.742 kb on + strandat 1239.075 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strandat 1239.115 kb on - strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.433 kb on + strand, within Psyr_1096at 1239.435 kb on + strand, within Psyr_1096at 1239.435 kb on + strand, within Psyr_1096at 1239.435 kb on + strand, within Psyr_1096at 1239.435 kb on + strand, within Psyr_1096at 1239.435 kb on + strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.514 kb on - strand, within Psyr_1096at 1239.514 kb on - strand, within Psyr_1096at 1240.416 kb on + strand, within Psyr_1096at 1240.417 kb on - strand, within Psyr_1096at 1240.425 kb on + strand, within Psyr_1096at 1240.425 kb on + strand, within Psyr_1096at 1240.425 kb on + strand, within Psyr_1096at 1240.425 kb on + strand, within Psyr_1096at 1240.425 kb on + strand, within Psyr_1096at 1240.426 kb on - strand, within Psyr_1096at 1240.426 kb on - strand, within Psyr_1096at 1240.426 kb on - strand, within Psyr_1096at 1240.426 kb on - strand, within Psyr_1096at 1240.426 kb on - strand, within Psyr_1096at 1240.495 kb on + strand, within Psyr_1096at 1240.495 kb on + strand, within Psyr_1096at 1240.496 kb on - strand, within Psyr_1096at 1240.611 kb on + strand, within Psyr_1096at 1240.611 kb on + strand, within Psyr_1096at 1240.612 kb on - strand, within Psyr_1096at 1240.612 kb on - strand, within Psyr_1096at 1240.673 kb on + strand, within Psyr_1096at 1240.673 kb on + strand, within Psyr_1096at 1240.833 kb on + strand, within Psyr_1096at 1240.834 kb on - strand, within Psyr_1096at 1240.903 kb on + strand, within Psyr_1096at 1241.133 kb on + strand, within Psyr_1096at 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.203 kb on - strandat 1241.203 kb on - strandat 1241.217 kb on + strandat 1241.217 kb on + strandat 1241.217 kb on + strandat 1241.217 kb on + strandat 1241.218 kb on - strandat 1241.218 kb on - strandat 1241.218 kb on - strandat 1241.719 kb on + strand, within Psyr_1097at 1241.719 kb on + strand, within Psyr_1097at 1241.720 kb on - strand, within Psyr_1097at 1241.858 kb on + strandat 1241.858 kb on + strandat 1241.858 kb on + strandat 1241.859 kb on - strandat 1241.901 kb on + strandat 1241.901 kb on + strandat 1241.901 kb on + strandat 1241.902 kb on - strandat 1241.916 kb on - strandat 1241.916 kb on - strandat 1241.964 kb on + strandat 1242.024 kb on - strandat 1242.024 kb on - strandat 1242.024 kb on - strandat 1242.024 kb on - strandat 1242.033 kb on + strandat 1242.141 kb on - strandat 1242.151 kb on - strandat 1242.154 kb on - strandat 1242.257 kb on + strandat 1242.258 kb on - strandat 1242.444 kb on + strand, within Psyr_1098at 1242.462 kb on - strand, within Psyr_1098

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,237,751 + Psyr_1095 0.32 -4.1
1,237,853 - Psyr_1095 0.41 -0.3
1,237,944 + Psyr_1095 0.49 -2.0
1,237,945 - Psyr_1095 0.49 +0.3
1,237,945 - Psyr_1095 0.49 -0.0
1,237,962 + Psyr_1095 0.50 +2.3
1,237,962 + Psyr_1095 0.50 -3.8
1,237,962 + Psyr_1095 0.50 +0.0
1,237,962 + Psyr_1095 0.50 -2.2
1,237,963 - Psyr_1095 0.51 -3.0
1,237,963 - Psyr_1095 0.51 -2.7
1,238,418 + -2.5
1,238,544 + -0.9
1,238,613 + +2.8
1,238,614 - -3.2
1,238,691 + -1.7
1,238,691 + -0.0
1,238,691 + -3.0
1,238,691 + -1.5
1,238,692 - -2.2
1,238,692 - +3.1
1,238,692 - -3.1
1,238,692 - -0.0
1,238,692 - +1.7
1,238,692 - +2.3
1,238,722 - -1.7
1,238,722 - +3.4
1,238,742 + -3.0
1,239,075 + Psyr_1096 0.17 +0.6
1,239,114 + Psyr_1096 0.18 -0.0
1,239,114 + Psyr_1096 0.18 -2.3
1,239,114 + Psyr_1096 0.18 +2.5
1,239,114 + Psyr_1096 0.18 -1.7
1,239,114 + Psyr_1096 0.18 -4.4
1,239,114 + Psyr_1096 0.18 -1.4
1,239,114 + Psyr_1096 0.18 -0.0
1,239,115 - Psyr_1096 0.18 -1.0
1,239,115 - Psyr_1096 0.18 +1.0
1,239,115 - Psyr_1096 0.18 -0.9
1,239,115 - Psyr_1096 0.18 -1.7
1,239,115 - Psyr_1096 0.18 -0.0
1,239,115 - Psyr_1096 0.18 -1.6
1,239,115 - Psyr_1096 0.18 +3.1
1,239,115 - Psyr_1096 0.18 -0.4
1,239,115 - +1.0
1,239,115 - Psyr_1096 0.18 -3.0
1,239,180 + Psyr_1096 0.20 -3.4
1,239,180 + Psyr_1096 0.20 +3.5
1,239,180 + Psyr_1096 0.20 +1.0
1,239,180 + Psyr_1096 0.20 -3.5
1,239,180 + Psyr_1096 0.20 -0.1
1,239,180 + Psyr_1096 0.20 +0.1
1,239,180 + Psyr_1096 0.20 +0.1
1,239,180 + Psyr_1096 0.20 -2.4
1,239,180 + Psyr_1096 0.20 -1.0
1,239,180 + Psyr_1096 0.20 +2.0
1,239,180 + Psyr_1096 0.20 +3.0
1,239,180 + Psyr_1096 0.20 -0.0
1,239,180 + Psyr_1096 0.20 +2.3
1,239,180 + Psyr_1096 0.20 +0.4
1,239,181 - Psyr_1096 0.20 -0.0
1,239,181 - Psyr_1096 0.20 -0.0
1,239,181 - Psyr_1096 0.20 -0.0
1,239,181 - Psyr_1096 0.20 -0.0
1,239,181 - Psyr_1096 0.20 -0.0
1,239,181 - Psyr_1096 0.20 -1.5
1,239,181 - Psyr_1096 0.20 -2.4
1,239,181 - Psyr_1096 0.20 -4.3
1,239,181 - Psyr_1096 0.20 -2.5
1,239,181 - Psyr_1096 0.20 -0.0
1,239,181 - Psyr_1096 0.20 -4.1
1,239,433 + Psyr_1096 0.29 -1.5
1,239,435 + Psyr_1096 0.29 +3.5
1,239,435 + Psyr_1096 0.29 +3.3
1,239,435 + Psyr_1096 0.29 +1.0
1,239,435 + Psyr_1096 0.29 +3.8
1,239,435 + Psyr_1096 0.29 -1.7
1,239,436 - Psyr_1096 0.29 +1.5
1,239,436 - Psyr_1096 0.29 -3.2
1,239,436 - Psyr_1096 0.29 -0.4
1,239,436 - Psyr_1096 0.29 +3.4
1,239,436 - Psyr_1096 0.29 -2.2
1,239,436 - Psyr_1096 0.29 -2.1
1,239,436 - Psyr_1096 0.29 -1.2
1,239,436 - Psyr_1096 0.29 -0.0
1,239,436 - Psyr_1096 0.29 +2.3
1,239,436 - Psyr_1096 0.29 -3.5
1,239,514 - Psyr_1096 0.32 -0.4
1,239,514 - Psyr_1096 0.32 -2.6
1,240,416 + Psyr_1096 0.63 -2.3
1,240,417 - Psyr_1096 0.63 -1.9
1,240,425 + Psyr_1096 0.64 -0.2
1,240,425 + Psyr_1096 0.64 -1.0
1,240,425 + Psyr_1096 0.64 -1.7
1,240,425 + Psyr_1096 0.64 +1.0
1,240,425 + Psyr_1096 0.64 -4.4
1,240,426 - Psyr_1096 0.64 -1.0
1,240,426 - Psyr_1096 0.64 -0.0
1,240,426 - Psyr_1096 0.64 +0.2
1,240,426 - Psyr_1096 0.64 +1.5
1,240,426 - Psyr_1096 0.64 -0.0
1,240,495 + Psyr_1096 0.66 +2.3
1,240,495 + Psyr_1096 0.66 -1.5
1,240,496 - Psyr_1096 0.66 +3.4
1,240,611 + Psyr_1096 0.70 -5.5
1,240,611 + Psyr_1096 0.70 -3.5
1,240,612 - Psyr_1096 0.70 +3.0
1,240,612 - Psyr_1096 0.70 -1.6
1,240,673 + Psyr_1096 0.72 -0.9
1,240,673 + Psyr_1096 0.72 -0.0
1,240,833 + Psyr_1096 0.78 +3.0
1,240,834 - Psyr_1096 0.78 +0.6
1,240,903 + Psyr_1096 0.80 -0.6
1,241,133 + Psyr_1096 0.88 +2.8
1,241,199 + -1.5
1,241,199 + -2.5
1,241,199 + +2.8
1,241,199 + +2.0
1,241,199 + +2.3
1,241,199 + +1.0
1,241,199 + -2.6
1,241,199 + -0.1
1,241,199 + +1.4
1,241,199 + -2.6
1,241,200 - -2.7
1,241,200 - -3.4
1,241,200 - -0.0
1,241,200 - +1.0
1,241,200 - +2.0
1,241,200 - -0.0
1,241,200 - -1.5
1,241,200 - -0.4
1,241,200 - -2.3
1,241,200 - +3.4
1,241,200 - -2.4
1,241,200 - -1.8
1,241,200 - -2.0
1,241,203 - +3.3
1,241,203 - -1.8
1,241,217 + -4.5
1,241,217 + -2.6
1,241,217 + -0.0
1,241,217 + -0.0
1,241,218 - +1.5
1,241,218 - -0.0
1,241,218 - -3.4
1,241,719 + Psyr_1097 0.64 -5.3
1,241,719 + Psyr_1097 0.64 -2.3
1,241,720 - Psyr_1097 0.64 -2.7
1,241,858 + -3.2
1,241,858 + -2.1
1,241,858 + -1.6
1,241,859 - -0.0
1,241,901 + -1.9
1,241,901 + -1.9
1,241,901 + +2.8
1,241,902 - -1.6
1,241,916 - -3.6
1,241,916 - -2.2
1,241,964 + -1.8
1,242,024 - +1.5
1,242,024 - +2.0
1,242,024 - -3.5
1,242,024 - -2.9
1,242,033 + +1.5
1,242,141 - +1.8
1,242,151 - -1.6
1,242,154 - -0.0
1,242,257 + -1.3
1,242,258 - -0.7
1,242,444 + Psyr_1098 0.12 +1.1
1,242,462 - Psyr_1098 0.13 -0.0

Or see this region's nucleotide sequence