Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1080

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1078 and Psyr_1079 are separated by 88 nucleotidesPsyr_1079 and Psyr_1080 overlap by 8 nucleotidesPsyr_1080 and Psyr_1081 are separated by 64 nucleotides Psyr_1078: Psyr_1078 - Protein of unknown function DUF24, at 1,221,539 to 1,221,982 _1078 Psyr_1079: Psyr_1079 - conserved hypothetical protein, at 1,222,071 to 1,222,562 _1079 Psyr_1080: Psyr_1080 - Excinuclease ABC, C subunit, N-terminal, at 1,222,555 to 1,222,896 _1080 Psyr_1081: Psyr_1081 - conserved hypothetical protein, at 1,222,961 to 1,223,893 _1081 Position (kb) 1222 1223Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1221.561 kb on + strandat 1221.561 kb on + strandat 1221.793 kb on + strand, within Psyr_1078at 1221.793 kb on + strand, within Psyr_1078at 1221.793 kb on + strand, within Psyr_1078at 1221.793 kb on + strand, within Psyr_1078at 1221.793 kb on + strand, within Psyr_1078at 1221.794 kb on - strand, within Psyr_1078at 1221.794 kb on - strand, within Psyr_1078at 1221.794 kb on - strand, within Psyr_1078at 1221.794 kb on - strand, within Psyr_1078at 1221.867 kb on - strand, within Psyr_1078at 1221.900 kb on + strand, within Psyr_1078at 1221.900 kb on + strand, within Psyr_1078at 1221.901 kb on - strand, within Psyr_1078at 1221.901 kb on - strand, within Psyr_1078at 1221.980 kb on + strandat 1221.980 kb on + strandat 1221.981 kb on - strandat 1222.047 kb on + strandat 1222.077 kb on + strandat 1222.077 kb on + strandat 1222.078 kb on - strandat 1222.122 kb on + strand, within Psyr_1079at 1222.123 kb on - strand, within Psyr_1079at 1222.123 kb on - strand, within Psyr_1079at 1222.167 kb on + strandat 1222.167 kb on + strand, within Psyr_1079at 1222.167 kb on + strand, within Psyr_1079at 1222.168 kb on - strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.333 kb on - strand, within Psyr_1079at 1222.655 kb on - strand, within Psyr_1080at 1222.655 kb on - strand, within Psyr_1080at 1222.655 kb on - strand, within Psyr_1080at 1222.753 kb on + strand, within Psyr_1080at 1222.753 kb on + strand, within Psyr_1080at 1222.753 kb on + strand, within Psyr_1080at 1222.753 kb on + strand, within Psyr_1080at 1222.753 kb on + strand, within Psyr_1080at 1222.754 kb on - strand, within Psyr_1080at 1222.849 kb on + strand, within Psyr_1080at 1222.849 kb on + strand, within Psyr_1080at 1222.849 kb on + strand, within Psyr_1080at 1222.849 kb on + strand, within Psyr_1080at 1222.850 kb on - strand, within Psyr_1080at 1222.850 kb on - strand, within Psyr_1080at 1222.850 kb on - strand, within Psyr_1080at 1222.850 kb on - strand, within Psyr_1080at 1222.850 kb on - strand, within Psyr_1080at 1222.850 kb on - strand, within Psyr_1080at 1222.853 kb on + strand, within Psyr_1080at 1222.854 kb on - strand, within Psyr_1080at 1222.926 kb on - strandat 1222.932 kb on + strandat 1223.147 kb on + strand, within Psyr_1081at 1223.147 kb on + strand, within Psyr_1081at 1223.147 kb on + strand, within Psyr_1081at 1223.147 kb on + strand, within Psyr_1081at 1223.147 kb on + strand, within Psyr_1081at 1223.147 kb on + strand, within Psyr_1081at 1223.147 kb on + strand, within Psyr_1081at 1223.148 kb on - strand, within Psyr_1081at 1223.148 kb on - strand, within Psyr_1081at 1223.148 kb on - strand, within Psyr_1081at 1223.148 kb on - strand, within Psyr_1081at 1223.148 kb on - strand, within Psyr_1081at 1223.148 kb on - strand, within Psyr_1081at 1223.148 kb on - strand, within Psyr_1081at 1223.148 kb on - strand, within Psyr_1081at 1223.148 kb on - strand, within Psyr_1081at 1223.148 kb on - strand, within Psyr_1081at 1223.521 kb on + strand, within Psyr_1081at 1223.521 kb on + strand, within Psyr_1081at 1223.521 kb on + strand, within Psyr_1081at 1223.521 kb on + strand, within Psyr_1081at 1223.521 kb on + strand, within Psyr_1081at 1223.521 kb on + strand, within Psyr_1081at 1223.521 kb on + strand, within Psyr_1081at 1223.521 kb on + strand, within Psyr_1081at 1223.521 kb on + strand, within Psyr_1081at 1223.521 kb on + strand, within Psyr_1081at 1223.522 kb on - strand, within Psyr_1081at 1223.522 kb on - strand, within Psyr_1081at 1223.522 kb on - strand, within Psyr_1081at 1223.522 kb on - strand, within Psyr_1081at 1223.522 kb on - strand, within Psyr_1081at 1223.522 kb on - strand, within Psyr_1081at 1223.522 kb on - strand, within Psyr_1081at 1223.522 kb on - strand, within Psyr_1081at 1223.522 kb on - strand, within Psyr_1081at 1223.573 kb on + strand, within Psyr_1081at 1223.790 kb on + strand, within Psyr_1081at 1223.853 kb on + strandat 1223.853 kb on + strandat 1223.853 kb on + strandat 1223.853 kb on + strandat 1223.853 kb on + strandat 1223.853 kb on + strandat 1223.853 kb on + strandat 1223.853 kb on + strandat 1223.854 kb on - strandat 1223.854 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,221,561 + +4.0
1,221,561 + -0.3
1,221,793 + Psyr_1078 0.57 +1.0
1,221,793 + Psyr_1078 0.57 +3.1
1,221,793 + Psyr_1078 0.57 +3.1
1,221,793 + Psyr_1078 0.57 -2.3
1,221,793 + Psyr_1078 0.57 +3.0
1,221,794 - Psyr_1078 0.57 +3.0
1,221,794 - Psyr_1078 0.57 +3.5
1,221,794 - Psyr_1078 0.57 -0.7
1,221,794 - Psyr_1078 0.57 +4.6
1,221,867 - Psyr_1078 0.74 -0.0
1,221,900 + Psyr_1078 0.81 +1.0
1,221,900 + Psyr_1078 0.81 -1.7
1,221,901 - Psyr_1078 0.82 -2.0
1,221,901 - Psyr_1078 0.82 -1.2
1,221,980 + +0.4
1,221,980 + +2.3
1,221,981 - +2.5
1,222,047 + +3.7
1,222,077 + -2.2
1,222,077 + -0.0
1,222,078 - +1.5
1,222,122 + Psyr_1079 0.10 -1.3
1,222,123 - Psyr_1079 0.11 +2.5
1,222,123 - Psyr_1079 0.11 +1.0
1,222,167 + -0.0
1,222,167 + Psyr_1079 0.20 +1.0
1,222,167 + Psyr_1079 0.20 +2.8
1,222,168 - Psyr_1079 0.20 -0.2
1,222,332 + Psyr_1079 0.53 -0.9
1,222,332 + Psyr_1079 0.53 -0.5
1,222,332 + Psyr_1079 0.53 +0.8
1,222,332 + Psyr_1079 0.53 +2.0
1,222,332 + Psyr_1079 0.53 +3.3
1,222,332 + Psyr_1079 0.53 -1.2
1,222,333 - Psyr_1079 0.53 +3.4
1,222,655 - Psyr_1080 0.29 -0.4
1,222,655 - Psyr_1080 0.29 -0.1
1,222,655 - Psyr_1080 0.29 +2.8
1,222,753 + Psyr_1080 0.58 -1.5
1,222,753 + Psyr_1080 0.58 -1.3
1,222,753 + Psyr_1080 0.58 -2.8
1,222,753 + Psyr_1080 0.58 +1.0
1,222,753 + Psyr_1080 0.58 -4.0
1,222,754 - Psyr_1080 0.58 -1.4
1,222,849 + Psyr_1080 0.86 -1.8
1,222,849 + Psyr_1080 0.86 +3.4
1,222,849 + Psyr_1080 0.86 -2.7
1,222,849 + Psyr_1080 0.86 +3.0
1,222,850 - Psyr_1080 0.86 -0.3
1,222,850 - Psyr_1080 0.86 -1.1
1,222,850 - Psyr_1080 0.86 -0.3
1,222,850 - Psyr_1080 0.86 +3.1
1,222,850 - Psyr_1080 0.86 -1.4
1,222,850 - Psyr_1080 0.86 +1.5
1,222,853 + Psyr_1080 0.87 +0.0
1,222,854 - Psyr_1080 0.87 +1.5
1,222,926 - -1.3
1,222,932 + -1.6
1,223,147 + Psyr_1081 0.20 +4.4
1,223,147 + Psyr_1081 0.20 +3.7
1,223,147 + Psyr_1081 0.20 -1.5
1,223,147 + Psyr_1081 0.20 -1.6
1,223,147 + Psyr_1081 0.20 -1.1
1,223,147 + Psyr_1081 0.20 -2.0
1,223,147 + Psyr_1081 0.20 +0.2
1,223,148 - Psyr_1081 0.20 -1.4
1,223,148 - Psyr_1081 0.20 -0.4
1,223,148 - Psyr_1081 0.20 -0.5
1,223,148 - Psyr_1081 0.20 -2.1
1,223,148 - Psyr_1081 0.20 -1.4
1,223,148 - Psyr_1081 0.20 +1.1
1,223,148 - Psyr_1081 0.20 -4.3
1,223,148 - Psyr_1081 0.20 -0.0
1,223,148 - Psyr_1081 0.20 -1.0
1,223,148 - Psyr_1081 0.20 -0.0
1,223,521 + Psyr_1081 0.60 -0.1
1,223,521 + Psyr_1081 0.60 +3.1
1,223,521 + Psyr_1081 0.60 -1.1
1,223,521 + Psyr_1081 0.60 +4.2
1,223,521 + Psyr_1081 0.60 -1.0
1,223,521 + Psyr_1081 0.60 -0.4
1,223,521 + Psyr_1081 0.60 -0.3
1,223,521 + Psyr_1081 0.60 -0.0
1,223,521 + Psyr_1081 0.60 -0.0
1,223,521 + Psyr_1081 0.60 +3.9
1,223,522 - Psyr_1081 0.60 +2.0
1,223,522 - Psyr_1081 0.60 -1.6
1,223,522 - Psyr_1081 0.60 -2.7
1,223,522 - Psyr_1081 0.60 -1.5
1,223,522 - Psyr_1081 0.60 -2.6
1,223,522 - Psyr_1081 0.60 -0.5
1,223,522 - Psyr_1081 0.60 -1.0
1,223,522 - Psyr_1081 0.60 -2.0
1,223,522 - Psyr_1081 0.60 -1.9
1,223,573 + Psyr_1081 0.66 +2.7
1,223,790 + Psyr_1081 0.89 -1.3
1,223,853 + -1.2
1,223,853 + +2.8
1,223,853 + +0.2
1,223,853 + +3.5
1,223,853 + +3.4
1,223,853 + +2.3
1,223,853 + +3.5
1,223,853 + -2.7
1,223,854 - -0.0
1,223,854 - +0.7

Or see this region's nucleotide sequence