Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1057

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1056 and Psyr_1057 are separated by 8 nucleotidesPsyr_1057 and Psyr_1058 are separated by 14 nucleotides Psyr_1056: Psyr_1056 - Poly(beta-D-mannuronate) lyase, at 1,194,797 to 1,195,933 _1056 Psyr_1057: Psyr_1057 - alginate biosynthesis protein AlgX, at 1,195,942 to 1,197,381 _1057 Psyr_1058: Psyr_1058 - Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis, at 1,197,396 to 1,199,006 _1058 Position (kb) 1195 1196 1197 1198Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1194.945 kb on + strand, within Psyr_1056at 1195.239 kb on + strand, within Psyr_1056at 1195.239 kb on + strand, within Psyr_1056at 1195.239 kb on + strand, within Psyr_1056at 1195.239 kb on + strand, within Psyr_1056at 1195.507 kb on + strand, within Psyr_1056at 1195.611 kb on + strand, within Psyr_1056at 1195.611 kb on + strand, within Psyr_1056at 1195.611 kb on + strand, within Psyr_1056at 1195.611 kb on + strand, within Psyr_1056at 1195.611 kb on + strand, within Psyr_1056at 1195.933 kb on + strandat 1195.933 kb on + strandat 1195.933 kb on + strandat 1195.933 kb on + strandat 1195.933 kb on + strandat 1195.934 kb on - strandat 1195.934 kb on - strandat 1195.934 kb on - strandat 1195.934 kb on - strandat 1195.946 kb on - strandat 1195.999 kb on + strandat 1195.999 kb on + strandat 1195.999 kb on + strandat 1195.999 kb on + strandat 1195.999 kb on + strandat 1196.000 kb on - strandat 1196.000 kb on - strandat 1196.175 kb on - strand, within Psyr_1057at 1196.376 kb on - strand, within Psyr_1057at 1196.399 kb on + strand, within Psyr_1057at 1196.400 kb on - strand, within Psyr_1057at 1196.465 kb on + strand, within Psyr_1057at 1196.465 kb on + strand, within Psyr_1057at 1196.531 kb on + strand, within Psyr_1057at 1196.531 kb on + strand, within Psyr_1057at 1196.531 kb on + strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.558 kb on + strand, within Psyr_1057at 1196.559 kb on - strand, within Psyr_1057at 1196.672 kb on + strand, within Psyr_1057at 1196.672 kb on + strand, within Psyr_1057at 1196.673 kb on - strand, within Psyr_1057at 1196.752 kb on - strand, within Psyr_1057at 1196.752 kb on - strand, within Psyr_1057at 1196.784 kb on + strand, within Psyr_1057at 1196.784 kb on + strand, within Psyr_1057at 1196.784 kb on + strand, within Psyr_1057at 1196.829 kb on + strand, within Psyr_1057at 1196.844 kb on - strand, within Psyr_1057at 1196.873 kb on + strand, within Psyr_1057at 1196.873 kb on + strand, within Psyr_1057at 1196.873 kb on + strand, within Psyr_1057at 1196.963 kb on + strand, within Psyr_1057at 1196.964 kb on - strand, within Psyr_1057at 1196.964 kb on - strand, within Psyr_1057at 1197.213 kb on - strand, within Psyr_1057at 1197.224 kb on + strand, within Psyr_1057at 1197.381 kb on + strandat 1197.381 kb on + strandat 1197.382 kb on - strandat 1197.388 kb on - strandat 1197.528 kb on - strandat 1197.761 kb on + strand, within Psyr_1058at 1197.761 kb on + strand, within Psyr_1058at 1197.761 kb on + strand, within Psyr_1058at 1197.832 kb on + strand, within Psyr_1058at 1197.863 kb on - strand, within Psyr_1058at 1197.875 kb on - strand, within Psyr_1058at 1198.067 kb on - strand, within Psyr_1058at 1198.120 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.216 kb on + strand, within Psyr_1058at 1198.217 kb on - strand, within Psyr_1058at 1198.226 kb on + strand, within Psyr_1058at 1198.227 kb on - strand, within Psyr_1058at 1198.227 kb on - strand, within Psyr_1058at 1198.227 kb on - strand, within Psyr_1058at 1198.256 kb on - strand, within Psyr_1058at 1198.345 kb on + strand, within Psyr_1058at 1198.346 kb on - strand, within Psyr_1058

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,194,945 + Psyr_1056 0.13 -1.3
1,195,239 + Psyr_1056 0.39 +1.0
1,195,239 + Psyr_1056 0.39 -2.1
1,195,239 + Psyr_1056 0.39 +1.7
1,195,239 + Psyr_1056 0.39 +2.3
1,195,507 + Psyr_1056 0.62 +1.0
1,195,611 + Psyr_1056 0.72 -0.6
1,195,611 + Psyr_1056 0.72 -0.0
1,195,611 + Psyr_1056 0.72 +3.0
1,195,611 + Psyr_1056 0.72 -0.8
1,195,611 + Psyr_1056 0.72 -0.8
1,195,933 + -0.9
1,195,933 + +3.5
1,195,933 + -0.0
1,195,933 + -0.0
1,195,933 + -4.0
1,195,934 - +5.2
1,195,934 - +2.3
1,195,934 - +0.3
1,195,934 - +1.5
1,195,946 - -2.4
1,195,999 + -2.5
1,195,999 + -0.0
1,195,999 + -0.0
1,195,999 + -0.0
1,195,999 + +1.0
1,196,000 - +2.8
1,196,000 - +2.8
1,196,175 - Psyr_1057 0.16 -0.9
1,196,376 - Psyr_1057 0.30 -2.0
1,196,399 + Psyr_1057 0.32 +0.2
1,196,400 - Psyr_1057 0.32 +0.0
1,196,465 + Psyr_1057 0.36 -4.0
1,196,465 + Psyr_1057 0.36 -2.5
1,196,531 + Psyr_1057 0.41 -3.0
1,196,531 + Psyr_1057 0.41 -2.2
1,196,531 + Psyr_1057 0.41 -2.0
1,196,532 - Psyr_1057 0.41 +0.9
1,196,532 - Psyr_1057 0.41 +0.2
1,196,532 - Psyr_1057 0.41 -1.6
1,196,532 - Psyr_1057 0.41 -0.0
1,196,532 - Psyr_1057 0.41 -4.2
1,196,558 + Psyr_1057 0.43 -0.9
1,196,559 - Psyr_1057 0.43 -0.2
1,196,672 + Psyr_1057 0.51 -4.2
1,196,672 + Psyr_1057 0.51 -1.6
1,196,673 - Psyr_1057 0.51 -1.5
1,196,752 - Psyr_1057 0.56 +0.7
1,196,752 - Psyr_1057 0.56 -0.4
1,196,784 + Psyr_1057 0.58 +2.5
1,196,784 + Psyr_1057 0.58 -1.3
1,196,784 + Psyr_1057 0.58 -2.0
1,196,829 + Psyr_1057 0.62 -2.5
1,196,844 - Psyr_1057 0.63 -0.2
1,196,873 + Psyr_1057 0.65 +0.6
1,196,873 + Psyr_1057 0.65 +3.5
1,196,873 + Psyr_1057 0.65 -2.6
1,196,963 + Psyr_1057 0.71 +1.0
1,196,964 - Psyr_1057 0.71 -0.6
1,196,964 - Psyr_1057 0.71 -0.5
1,197,213 - Psyr_1057 0.88 -1.2
1,197,224 + Psyr_1057 0.89 -3.0
1,197,381 + +4.1
1,197,381 + +1.5
1,197,382 - -1.6
1,197,388 - +2.3
1,197,528 - +2.5
1,197,761 + Psyr_1058 0.23 -1.0
1,197,761 + Psyr_1058 0.23 -2.2
1,197,761 + Psyr_1058 0.23 +1.0
1,197,832 + Psyr_1058 0.27 +3.8
1,197,863 - Psyr_1058 0.29 +1.5
1,197,875 - Psyr_1058 0.30 -1.6
1,198,067 - Psyr_1058 0.42 -0.9
1,198,120 + Psyr_1058 0.45 +2.5
1,198,126 + Psyr_1058 0.45 -1.3
1,198,126 + Psyr_1058 0.45 +1.5
1,198,126 + Psyr_1058 0.45 +2.0
1,198,126 + Psyr_1058 0.45 +1.5
1,198,126 + Psyr_1058 0.45 +1.6
1,198,126 + Psyr_1058 0.45 -0.7
1,198,126 + Psyr_1058 0.45 -3.9
1,198,127 - Psyr_1058 0.45 +2.1
1,198,127 - Psyr_1058 0.45 -1.8
1,198,127 - Psyr_1058 0.45 +3.9
1,198,127 - Psyr_1058 0.45 +0.1
1,198,127 - Psyr_1058 0.45 -0.6
1,198,216 + Psyr_1058 0.51 +1.0
1,198,217 - Psyr_1058 0.51 -4.4
1,198,226 + Psyr_1058 0.52 -4.0
1,198,227 - Psyr_1058 0.52 -1.6
1,198,227 - Psyr_1058 0.52 -0.9
1,198,227 - Psyr_1058 0.52 -3.5
1,198,256 - Psyr_1058 0.53 -3.1
1,198,345 + Psyr_1058 0.59 +3.3
1,198,346 - Psyr_1058 0.59 -3.9

Or see this region's nucleotide sequence