Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1038

Experiment: KB with Mitomycin C 0.625 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Mitomycin C 0.625 ug/ml
1,170,679	+				+2.0
1,170,680	-				-2.6
1,170,960	+		Psyr_1037	0.38	-0.0
1,170,961	-		Psyr_1037	0.39	-0.0
1,170,961	-		Psyr_1037	0.39	+1.0
1,170,987	+		Psyr_1037	0.45	-0.0
1,170,987	+		Psyr_1037	0.45	-1.2
1,170,988	-		Psyr_1037	0.45	-1.3
1,170,988	-		Psyr_1037	0.45	+2.3
1,171,129	+		Psyr_1037	0.78	-3.4
1,171,129	+		Psyr_1037	0.78	-2.6
1,171,130	-		Psyr_1037	0.78	+3.4
1,171,182	-				+3.0
1,171,199	+				-2.7
1,171,205	+				-3.9
1,171,223	+				-3.2
1,171,223	+				+3.0
1,171,224	-				+2.3
1,171,224	-				-2.6
1,171,227	+				+2.0
1,171,227	+				-0.0
1,171,228	-				+1.0
1,171,228	-				+2.8
1,171,228	-				-3.9
1,171,228	-				-1.5
1,171,234	+				+1.5
1,171,234	+				-0.0
1,171,237	+				-3.9
1,171,354	-				-2.4
1,171,498	+				-0.9
1,171,499	-				+0.6
1,171,499	-				+0.1
1,171,499	-				-1.8
1,171,518	+				-1.0
1,171,518	+				+1.0
1,171,518	+				+3.1
1,171,518	+				-2.6
1,171,518	+				+1.0
1,171,518	+				-2.6
1,171,519	-				+0.4
1,171,519	-				+4.3
1,171,519	-				-1.0
1,171,519	-				+1.3
1,171,519	-				+3.1
1,171,519	-				+2.0
1,171,519	-				-4.7
1,171,522	+				+1.5
1,171,522	+				+1.5
1,171,522	+				+1.8
1,171,523	-				-0.0
1,171,523	-				-4.1
1,171,523	-				-0.3
1,171,547	-				-0.0
1,171,547	-				+0.6
1,171,547	-				-1.9
1,171,547	-				-1.5
1,171,582	+				+1.5
1,171,582	+				+2.8
1,171,583	-				+3.3
1,171,583	-				-1.7
1,171,583	-				+1.1
1,171,583	-				-0.1
1,171,583	-				-0.7
1,171,654	+				+2.5
1,171,682	-				+3.9
1,171,682	-				-0.0
1,171,682	-				+3.9
1,171,728	-				-1.7
1,171,775	+		Psyr_1038	0.12	-0.6
1,171,776	-		Psyr_1038	0.12	-1.3
1,171,799	-		Psyr_1038	0.13	-0.8
1,171,895	-		Psyr_1038	0.17	+3.9
1,171,895	-		Psyr_1038	0.17	-3.5
1,171,904	-		Psyr_1038	0.17	+3.1
1,171,948	+		Psyr_1038	0.19	+1.5
1,171,948	+		Psyr_1038	0.19	-1.7
1,171,948	+		Psyr_1038	0.19	+4.0
1,171,948	+		Psyr_1038	0.19	+3.0
1,171,949	-		Psyr_1038	0.19	+0.1
1,171,949	-		Psyr_1038	0.19	-0.3
1,171,949	-		Psyr_1038	0.19	+0.7
1,172,087	-		Psyr_1038	0.25	+0.4
1,172,374	+		Psyr_1038	0.37	-2.6
1,172,375	-		Psyr_1038	0.37	-4.0
1,172,375	-		Psyr_1038	0.37	+1.5
1,172,375	-		Psyr_1038	0.37	+3.3
1,172,491	+		Psyr_1038	0.42	-0.7
1,172,492	-		Psyr_1038	0.42	-1.6
1,172,618	-		Psyr_1038	0.48	+1.5
1,172,680	+		Psyr_1038	0.50	+2.8
1,172,761	+		Psyr_1038	0.54	-0.8
1,172,761	+		Psyr_1038	0.54	+1.5
1,172,762	-		Psyr_1038	0.54	+0.5
1,172,806	+		Psyr_1038	0.56	-0.4
1,172,806	+		Psyr_1038	0.56	+1.0
1,172,807	-		Psyr_1038	0.56	-0.2
1,172,809	+		Psyr_1038	0.56	-1.0
1,172,851	+		Psyr_1038	0.58	+1.5
1,172,851	+		Psyr_1038	0.58	-3.6
1,173,721	+				-2.0
1,173,806	+				-1.9
1,173,806	+				+1.5
1,173,806	+				-1.2
1,173,806	+				-2.9
1,173,806	+				-3.2
1,173,806	+				+2.8
1,173,807	-				-2.0
1,173,807	-				+3.5
1,173,807	-				+0.5
1,173,807	-				-2.3
1,173,807	-				+3.7
1,173,807	-				+2.3
1,173,807	-				-1.8
1,173,955	-				+3.3
1,174,339	+				-1.3
1,174,353	+				+1.5
1,174,458	+				+1.0
1,174,458	+				-0.0
1,174,458	+				-0.0
1,174,458	+				+2.1
1,174,458	+				+1.5
1,174,458	+				+0.5
1,174,458	+				+0.0
1,174,458	+				+3.3
1,174,458	+				+3.1
1,174,458	+				+3.1
1,174,458	+				-2.0
1,174,458	+				+3.9
1,174,458	+				-0.3
1,174,458	+				-0.3
1,174,458	+				-0.0
1,174,458	+				-4.1
1,174,459	-				-1.4
1,174,459	-				+1.4
1,174,459	-				+2.0
1,174,459	-				+0.4
1,174,459	-				-0.0
1,174,459	-				-0.0
1,174,459	-				-0.2
1,174,459	-				+3.1
1,174,459	-				+0.6
1,174,459	-				+0.6
1,174,459	-				+2.0
1,174,459	-				+3.1
1,174,459	-				+3.0
1,174,845	+		Psyr_1039	0.35	-2.0