Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0969

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0968 and Psyr_0969 are separated by 4 nucleotidesPsyr_0969 and Psyr_0970 are separated by 207 nucleotidesPsyr_0970 and Psyr_0971 are separated by 66 nucleotides Psyr_0968: Psyr_0968 - Xanthine/uracil permease family, at 1,101,699 to 1,102,976 _0968 Psyr_0969: Psyr_0969 - uracil phosphoribosyltransferase, at 1,102,981 to 1,103,619 _0969 Psyr_0970: Psyr_0970 - Phosphoribosyltransferase, at 1,103,827 to 1,104,384 _0970 Psyr_0971: Psyr_0971 - conserved hypothetical protein, at 1,104,451 to 1,104,954 _0971 Position (kb) 1102 1103 1104Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1102.078 kb on + strand, within Psyr_0968at 1102.078 kb on + strand, within Psyr_0968at 1102.078 kb on + strand, within Psyr_0968at 1102.078 kb on + strand, within Psyr_0968at 1102.078 kb on + strand, within Psyr_0968at 1102.078 kb on + strand, within Psyr_0968at 1102.079 kb on - strand, within Psyr_0968at 1102.079 kb on - strand, within Psyr_0968at 1102.117 kb on + strand, within Psyr_0968at 1102.118 kb on - strand, within Psyr_0968at 1102.118 kb on - strand, within Psyr_0968at 1102.124 kb on + strand, within Psyr_0968at 1102.387 kb on + strand, within Psyr_0968at 1102.388 kb on - strand, within Psyr_0968at 1102.388 kb on - strand, within Psyr_0968at 1102.388 kb on - strand, within Psyr_0968at 1102.388 kb on - strand, within Psyr_0968at 1102.388 kb on - strand, within Psyr_0968at 1102.682 kb on + strand, within Psyr_0968at 1102.682 kb on + strand, within Psyr_0968at 1102.682 kb on + strand, within Psyr_0968at 1102.682 kb on + strand, within Psyr_0968at 1102.682 kb on + strand, within Psyr_0968at 1102.683 kb on - strand, within Psyr_0968at 1102.683 kb on - strand, within Psyr_0968at 1102.683 kb on - strand, within Psyr_0968at 1102.683 kb on - strand, within Psyr_0968at 1102.684 kb on + strand, within Psyr_0968at 1102.684 kb on + strand, within Psyr_0968at 1102.684 kb on + strand, within Psyr_0968at 1102.684 kb on + strand, within Psyr_0968at 1102.685 kb on - strand, within Psyr_0968at 1102.685 kb on - strand, within Psyr_0968at 1103.045 kb on + strand, within Psyr_0969at 1103.046 kb on - strand, within Psyr_0969at 1103.046 kb on - strand, within Psyr_0969at 1103.046 kb on - strand, within Psyr_0969at 1103.084 kb on + strand, within Psyr_0969at 1103.084 kb on + strand, within Psyr_0969at 1103.085 kb on - strand, within Psyr_0969at 1103.085 kb on - strand, within Psyr_0969at 1103.282 kb on + strand, within Psyr_0969at 1103.282 kb on + strand, within Psyr_0969at 1103.465 kb on + strand, within Psyr_0969at 1103.466 kb on - strand, within Psyr_0969at 1103.466 kb on - strand, within Psyr_0969at 1103.466 kb on - strand, within Psyr_0969at 1103.466 kb on - strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.498 kb on + strand, within Psyr_0969at 1103.499 kb on - strand, within Psyr_0969at 1103.499 kb on - strand, within Psyr_0969at 1103.499 kb on - strand, within Psyr_0969at 1103.499 kb on - strand, within Psyr_0969at 1103.569 kb on - strandat 1103.587 kb on + strandat 1103.588 kb on - strandat 1103.652 kb on + strandat 1103.652 kb on + strandat 1103.652 kb on + strandat 1103.652 kb on + strandat 1103.653 kb on - strandat 1103.653 kb on - strandat 1103.653 kb on - strandat 1103.653 kb on - strandat 1103.662 kb on + strandat 1103.663 kb on - strandat 1103.681 kb on + strandat 1103.682 kb on - strandat 1103.746 kb on + strandat 1103.783 kb on + strandat 1103.784 kb on - strandat 1103.812 kb on + strandat 1103.881 kb on + strandat 1103.882 kb on - strandat 1103.882 kb on - strandat 1104.040 kb on + strand, within Psyr_0970at 1104.041 kb on - strand, within Psyr_0970at 1104.041 kb on - strand, within Psyr_0970at 1104.280 kb on + strand, within Psyr_0970at 1104.307 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.309 kb on + strand, within Psyr_0970at 1104.310 kb on - strand, within Psyr_0970at 1104.331 kb on + strandat 1104.331 kb on + strandat 1104.331 kb on + strandat 1104.331 kb on + strandat 1104.332 kb on - strandat 1104.332 kb on - strandat 1104.332 kb on - strandat 1104.349 kb on - strandat 1104.360 kb on + strandat 1104.364 kb on + strandat 1104.364 kb on + strandat 1104.365 kb on - strandat 1104.365 kb on - strandat 1104.365 kb on - strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.382 kb on + strandat 1104.383 kb on - strandat 1104.383 kb on - strandat 1104.383 kb on - strandat 1104.383 kb on - strandat 1104.383 kb on - strandat 1104.383 kb on - strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.435 kb on + strandat 1104.436 kb on - strandat 1104.436 kb on - strandat 1104.436 kb on - strandat 1104.436 kb on - strandat 1104.438 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
1,102,078 + Psyr_0968 0.30 +1.6
1,102,078 + Psyr_0968 0.30 -2.5
1,102,078 + Psyr_0968 0.30 +2.8
1,102,078 + Psyr_0968 0.30 -2.3
1,102,078 + Psyr_0968 0.30 -4.8
1,102,078 + Psyr_0968 0.30 -0.0
1,102,079 - Psyr_0968 0.30 -0.0
1,102,079 - Psyr_0968 0.30 +2.6
1,102,117 + Psyr_0968 0.33 +2.8
1,102,118 - Psyr_0968 0.33 -2.0
1,102,118 - Psyr_0968 0.33 -1.3
1,102,124 + Psyr_0968 0.33 -1.8
1,102,387 + Psyr_0968 0.54 -0.5
1,102,388 - Psyr_0968 0.54 +1.0
1,102,388 - Psyr_0968 0.54 -1.4
1,102,388 - Psyr_0968 0.54 -1.5
1,102,388 - Psyr_0968 0.54 +0.4
1,102,388 - Psyr_0968 0.54 -0.0
1,102,682 + Psyr_0968 0.77 -0.8
1,102,682 + Psyr_0968 0.77 -1.0
1,102,682 + Psyr_0968 0.77 -0.1
1,102,682 + Psyr_0968 0.77 +4.4
1,102,682 + Psyr_0968 0.77 -1.1
1,102,683 - Psyr_0968 0.77 +1.6
1,102,683 - Psyr_0968 0.77 -0.0
1,102,683 - Psyr_0968 0.77 -0.7
1,102,683 - Psyr_0968 0.77 -3.2
1,102,684 + Psyr_0968 0.77 -0.0
1,102,684 + Psyr_0968 0.77 -0.0
1,102,684 + Psyr_0968 0.77 +2.3
1,102,684 + Psyr_0968 0.77 +1.6
1,102,685 - Psyr_0968 0.77 -2.6
1,102,685 - Psyr_0968 0.77 -1.0
1,103,045 + Psyr_0969 0.10 -0.5
1,103,046 - Psyr_0969 0.10 +3.8
1,103,046 - Psyr_0969 0.10 +2.3
1,103,046 - Psyr_0969 0.10 -1.4
1,103,084 + Psyr_0969 0.16 -3.3
1,103,084 + Psyr_0969 0.16 -0.5
1,103,085 - Psyr_0969 0.16 +3.3
1,103,085 - Psyr_0969 0.16 +3.1
1,103,282 + Psyr_0969 0.47 +1.7
1,103,282 + Psyr_0969 0.47 -1.0
1,103,465 + Psyr_0969 0.76 -0.6
1,103,466 - Psyr_0969 0.76 -1.5
1,103,466 - Psyr_0969 0.76 -0.0
1,103,466 - Psyr_0969 0.76 -0.2
1,103,466 - Psyr_0969 0.76 +1.0
1,103,498 + Psyr_0969 0.81 +3.6
1,103,498 + Psyr_0969 0.81 -2.8
1,103,498 + Psyr_0969 0.81 +4.0
1,103,498 + Psyr_0969 0.81 +0.4
1,103,498 + Psyr_0969 0.81 +3.0
1,103,498 + Psyr_0969 0.81 +0.8
1,103,498 + Psyr_0969 0.81 +4.1
1,103,498 + Psyr_0969 0.81 +4.1
1,103,498 + Psyr_0969 0.81 -1.2
1,103,498 + Psyr_0969 0.81 -0.1
1,103,498 + Psyr_0969 0.81 -2.2
1,103,499 - Psyr_0969 0.81 -0.6
1,103,499 - Psyr_0969 0.81 +0.1
1,103,499 - Psyr_0969 0.81 +3.3
1,103,499 - Psyr_0969 0.81 -0.0
1,103,569 - +3.0
1,103,587 + +0.1
1,103,588 - -0.0
1,103,652 + -0.0
1,103,652 + -2.3
1,103,652 + -0.4
1,103,652 + +2.6
1,103,653 - -1.6
1,103,653 - -2.1
1,103,653 - -1.3
1,103,653 - -2.7
1,103,662 + -2.3
1,103,663 - +3.1
1,103,681 + +2.3
1,103,682 - -0.0
1,103,746 + +1.0
1,103,783 + -1.3
1,103,784 - +2.6
1,103,812 + +2.8
1,103,881 + -1.1
1,103,882 - -1.9
1,103,882 - -0.0
1,104,040 + Psyr_0970 0.38 -1.0
1,104,041 - Psyr_0970 0.38 +2.0
1,104,041 - Psyr_0970 0.38 +2.0
1,104,280 + Psyr_0970 0.81 +1.6
1,104,307 + Psyr_0970 0.86 +2.3
1,104,309 + Psyr_0970 0.86 -1.2
1,104,309 + Psyr_0970 0.86 -0.8
1,104,309 + Psyr_0970 0.86 +1.6
1,104,309 + Psyr_0970 0.86 -0.0
1,104,309 + Psyr_0970 0.86 -1.2
1,104,309 + Psyr_0970 0.86 +0.7
1,104,310 - Psyr_0970 0.87 -0.0
1,104,331 + -1.2
1,104,331 + +1.0
1,104,331 + -1.5
1,104,331 + -1.0
1,104,332 - -0.0
1,104,332 - -1.9
1,104,332 - -0.0
1,104,349 - -0.0
1,104,360 + -3.8
1,104,364 + -0.0
1,104,364 + +2.0
1,104,365 - +3.0
1,104,365 - -2.0
1,104,365 - -3.0
1,104,382 + -1.0
1,104,382 + +2.8
1,104,382 + -2.0
1,104,382 + +3.6
1,104,382 + -3.7
1,104,382 + +2.6
1,104,382 + +0.4
1,104,382 + +3.1
1,104,383 - -0.2
1,104,383 - -1.4
1,104,383 - +3.3
1,104,383 - -2.8
1,104,383 - -2.9
1,104,383 - +2.0
1,104,435 + -0.6
1,104,435 + -2.1
1,104,435 + -0.0
1,104,435 + -1.7
1,104,435 + +1.6
1,104,435 + -0.4
1,104,435 + -2.4
1,104,435 + -0.0
1,104,435 + +3.3
1,104,436 - -0.5
1,104,436 - -0.3
1,104,436 - +3.0
1,104,436 - -0.6
1,104,438 - +3.8

Or see this region's nucleotide sequence