Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0955

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0953 and Psyr_0954 are separated by 302 nucleotidesPsyr_0954 and Psyr_0955 are separated by 86 nucleotidesPsyr_0955 and Psyr_0956 overlap by 8 nucleotides Psyr_0953: Psyr_0953 - conserved hypothetical protein, at 1,088,508 to 1,089,026 _0953 Psyr_0954: Psyr_0954 - Protein of unknown function UPF0153, at 1,089,329 to 1,089,553 _0954 Psyr_0955: Psyr_0955 - membrane protein, putative, at 1,089,640 to 1,090,149 _0955 Psyr_0956: Psyr_0956 - Cyclopropane-fatty-acyl-phospholipid synthase, at 1,090,142 to 1,091,410 _0956 Position (kb) 1089 1090 1091Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1088.654 kb on + strand, within Psyr_0953at 1088.709 kb on + strand, within Psyr_0953at 1088.709 kb on + strand, within Psyr_0953at 1088.709 kb on + strand, within Psyr_0953at 1088.709 kb on + strand, within Psyr_0953at 1088.709 kb on + strand, within Psyr_0953at 1088.710 kb on - strand, within Psyr_0953at 1088.710 kb on - strand, within Psyr_0953at 1088.710 kb on - strand, within Psyr_0953at 1088.715 kb on + strand, within Psyr_0953at 1088.715 kb on + strand, within Psyr_0953at 1088.716 kb on - strand, within Psyr_0953at 1088.733 kb on + strand, within Psyr_0953at 1088.733 kb on + strand, within Psyr_0953at 1088.733 kb on + strand, within Psyr_0953at 1088.733 kb on + strand, within Psyr_0953at 1088.734 kb on - strand, within Psyr_0953at 1088.734 kb on - strand, within Psyr_0953at 1088.742 kb on - strand, within Psyr_0953at 1088.776 kb on - strand, within Psyr_0953at 1088.805 kb on + strand, within Psyr_0953at 1088.805 kb on + strand, within Psyr_0953at 1088.805 kb on + strand, within Psyr_0953at 1088.805 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.809 kb on + strand, within Psyr_0953at 1088.810 kb on - strand, within Psyr_0953at 1088.810 kb on - strand, within Psyr_0953at 1088.810 kb on - strand, within Psyr_0953at 1088.810 kb on - strand, within Psyr_0953at 1088.810 kb on - strand, within Psyr_0953at 1088.810 kb on - strand, within Psyr_0953at 1088.810 kb on - strand, within Psyr_0953at 1088.810 kb on - strand, within Psyr_0953at 1088.810 kb on - strand, within Psyr_0953at 1088.989 kb on + strandat 1088.989 kb on + strandat 1088.989 kb on + strandat 1088.989 kb on + strandat 1088.989 kb on + strandat 1088.989 kb on + strandat 1088.989 kb on + strandat 1088.989 kb on + strandat 1088.989 kb on + strandat 1088.989 kb on + strandat 1088.989 kb on + strandat 1088.990 kb on - strandat 1088.990 kb on - strandat 1088.990 kb on - strandat 1088.990 kb on - strandat 1088.990 kb on - strandat 1088.990 kb on - strandat 1088.990 kb on - strandat 1088.998 kb on - strandat 1089.009 kb on + strandat 1089.009 kb on + strandat 1089.009 kb on + strandat 1089.009 kb on + strandat 1089.009 kb on + strandat 1089.010 kb on - strandat 1089.183 kb on + strandat 1089.184 kb on - strandat 1089.185 kb on + strandat 1089.185 kb on + strandat 1089.185 kb on + strandat 1089.186 kb on - strandat 1089.186 kb on - strandat 1089.186 kb on - strandat 1089.255 kb on - strandat 1089.256 kb on - strandat 1089.289 kb on + strandat 1089.289 kb on + strandat 1089.289 kb on + strandat 1089.289 kb on + strandat 1089.289 kb on + strandat 1089.290 kb on - strandat 1089.290 kb on - strandat 1089.290 kb on - strandat 1089.291 kb on + strandat 1089.298 kb on + strandat 1089.298 kb on + strandat 1089.336 kb on + strandat 1089.336 kb on + strandat 1089.336 kb on + strandat 1089.337 kb on - strandat 1089.516 kb on + strand, within Psyr_0954at 1089.516 kb on + strand, within Psyr_0954at 1089.516 kb on + strand, within Psyr_0954at 1089.517 kb on - strand, within Psyr_0954at 1089.517 kb on - strand, within Psyr_0954at 1089.635 kb on - strandat 1089.635 kb on - strandat 1089.700 kb on + strand, within Psyr_0955at 1089.700 kb on + strand, within Psyr_0955at 1089.700 kb on + strand, within Psyr_0955at 1089.700 kb on + strand, within Psyr_0955at 1089.700 kb on + strand, within Psyr_0955at 1089.700 kb on + strand, within Psyr_0955at 1089.700 kb on + strand, within Psyr_0955at 1089.700 kb on + strand, within Psyr_0955at 1089.700 kb on + strand, within Psyr_0955at 1089.701 kb on - strand, within Psyr_0955at 1089.701 kb on - strand, within Psyr_0955at 1089.786 kb on - strand, within Psyr_0955at 1089.786 kb on - strand, within Psyr_0955at 1089.786 kb on - strand, within Psyr_0955at 1089.786 kb on - strand, within Psyr_0955at 1089.786 kb on - strand, within Psyr_0955at 1089.788 kb on + strand, within Psyr_0955at 1089.788 kb on + strand, within Psyr_0955at 1089.788 kb on + strand, within Psyr_0955at 1089.788 kb on + strand, within Psyr_0955at 1089.789 kb on - strand, within Psyr_0955at 1089.960 kb on + strand, within Psyr_0955at 1089.960 kb on + strand, within Psyr_0955at 1089.960 kb on + strand, within Psyr_0955at 1089.960 kb on + strand, within Psyr_0955at 1090.143 kb on + strandat 1090.143 kb on + strandat 1090.246 kb on - strandat 1090.254 kb on + strandat 1090.254 kb on + strandat 1090.287 kb on + strand, within Psyr_0956at 1090.288 kb on - strand, within Psyr_0956at 1090.461 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.639 kb on - strand, within Psyr_0956at 1090.785 kb on + strand, within Psyr_0956at 1090.785 kb on + strand, within Psyr_0956at 1090.785 kb on + strand, within Psyr_0956at 1090.789 kb on + strand, within Psyr_0956at 1090.789 kb on + strand, within Psyr_0956at 1090.789 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.981 kb on - strand, within Psyr_0956at 1091.017 kb on + strand, within Psyr_0956at 1091.017 kb on + strand, within Psyr_0956at 1091.018 kb on - strand, within Psyr_0956

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,088,654 + Psyr_0953 0.28 -2.6
1,088,709 + Psyr_0953 0.39 +3.9
1,088,709 + Psyr_0953 0.39 -1.1
1,088,709 + Psyr_0953 0.39 -1.3
1,088,709 + Psyr_0953 0.39 -1.2
1,088,709 + Psyr_0953 0.39 -0.8
1,088,710 - Psyr_0953 0.39 -4.6
1,088,710 - Psyr_0953 0.39 -2.7
1,088,710 - Psyr_0953 0.39 +0.1
1,088,715 + Psyr_0953 0.40 +0.3
1,088,715 + Psyr_0953 0.40 +1.0
1,088,716 - Psyr_0953 0.40 -3.3
1,088,733 + Psyr_0953 0.43 +1.0
1,088,733 + Psyr_0953 0.43 +4.2
1,088,733 + Psyr_0953 0.43 -0.9
1,088,733 + Psyr_0953 0.43 +2.3
1,088,734 - Psyr_0953 0.44 -0.4
1,088,734 - Psyr_0953 0.44 -3.2
1,088,742 - Psyr_0953 0.45 -1.0
1,088,776 - Psyr_0953 0.52 -1.8
1,088,805 + Psyr_0953 0.57 -1.0
1,088,805 + Psyr_0953 0.57 +2.0
1,088,805 + Psyr_0953 0.57 +3.6
1,088,805 + Psyr_0953 0.57 -2.3
1,088,809 + Psyr_0953 0.58 +2.8
1,088,809 + Psyr_0953 0.58 +2.3
1,088,809 + Psyr_0953 0.58 +2.8
1,088,809 + Psyr_0953 0.58 -0.3
1,088,809 + Psyr_0953 0.58 -0.2
1,088,809 + Psyr_0953 0.58 -2.5
1,088,809 + Psyr_0953 0.58 +1.1
1,088,809 + Psyr_0953 0.58 +4.2
1,088,809 + Psyr_0953 0.58 -0.0
1,088,809 + Psyr_0953 0.58 -0.4
1,088,809 + Psyr_0953 0.58 +1.6
1,088,809 + Psyr_0953 0.58 -0.3
1,088,810 - Psyr_0953 0.58 -2.1
1,088,810 - Psyr_0953 0.58 -3.2
1,088,810 - Psyr_0953 0.58 +0.6
1,088,810 - Psyr_0953 0.58 -0.0
1,088,810 - Psyr_0953 0.58 -2.0
1,088,810 - Psyr_0953 0.58 -2.1
1,088,810 - Psyr_0953 0.58 -4.3
1,088,810 - Psyr_0953 0.58 +1.6
1,088,810 - Psyr_0953 0.58 +3.0
1,088,989 + -1.2
1,088,989 + -0.8
1,088,989 + +3.4
1,088,989 + -0.8
1,088,989 + +0.8
1,088,989 + -0.0
1,088,989 + -1.2
1,088,989 + -2.7
1,088,989 + -0.0
1,088,989 + -0.5
1,088,989 + +2.8
1,088,990 - -5.5
1,088,990 - -0.0
1,088,990 - -3.7
1,088,990 - -0.0
1,088,990 - -0.0
1,088,990 - -2.1
1,088,990 - +1.9
1,088,998 - -3.2
1,089,009 + -2.6
1,089,009 + +1.6
1,089,009 + +1.4
1,089,009 + -0.0
1,089,009 + -1.0
1,089,010 - +3.0
1,089,183 + +1.5
1,089,184 - -2.5
1,089,185 + +1.5
1,089,185 + -1.0
1,089,185 + -1.5
1,089,186 - +0.4
1,089,186 - -0.8
1,089,186 - -1.2
1,089,255 - -0.2
1,089,256 - -0.0
1,089,289 + -2.0
1,089,289 + -0.0
1,089,289 + -3.9
1,089,289 + -3.7
1,089,289 + -0.7
1,089,290 - -0.0
1,089,290 - +1.6
1,089,290 - -0.0
1,089,291 + -4.9
1,089,298 + +2.5
1,089,298 + -0.0
1,089,336 + -2.0
1,089,336 + -0.6
1,089,336 + -3.5
1,089,337 - -2.4
1,089,516 + Psyr_0954 0.83 -0.0
1,089,516 + Psyr_0954 0.83 -3.5
1,089,516 + Psyr_0954 0.83 +1.4
1,089,517 - Psyr_0954 0.84 -2.6
1,089,517 - Psyr_0954 0.84 -1.3
1,089,635 - +0.8
1,089,635 - -0.0
1,089,700 + Psyr_0955 0.12 -2.0
1,089,700 + Psyr_0955 0.12 +3.8
1,089,700 + Psyr_0955 0.12 -3.5
1,089,700 + Psyr_0955 0.12 +2.0
1,089,700 + Psyr_0955 0.12 -2.6
1,089,700 + Psyr_0955 0.12 -3.0
1,089,700 + Psyr_0955 0.12 -2.9
1,089,700 + Psyr_0955 0.12 -3.5
1,089,700 + Psyr_0955 0.12 -4.2
1,089,701 - Psyr_0955 0.12 +2.8
1,089,701 - Psyr_0955 0.12 -2.6
1,089,786 - Psyr_0955 0.29 +2.6
1,089,786 - Psyr_0955 0.29 -2.0
1,089,786 - Psyr_0955 0.29 +0.2
1,089,786 - Psyr_0955 0.29 -2.0
1,089,786 - Psyr_0955 0.29 -1.1
1,089,788 + Psyr_0955 0.29 -2.1
1,089,788 + Psyr_0955 0.29 -4.2
1,089,788 + Psyr_0955 0.29 +2.3
1,089,788 + Psyr_0955 0.29 -1.6
1,089,789 - Psyr_0955 0.29 +2.0
1,089,960 + Psyr_0955 0.63 -2.4
1,089,960 + Psyr_0955 0.63 -1.3
1,089,960 + Psyr_0955 0.63 -3.4
1,089,960 + Psyr_0955 0.63 -1.9
1,090,143 + -1.2
1,090,143 + -1.0
1,090,246 - +3.3
1,090,254 + +0.7
1,090,254 + -1.9
1,090,287 + Psyr_0956 0.11 -3.0
1,090,288 - Psyr_0956 0.12 +3.7
1,090,461 + Psyr_0956 0.25 +3.5
1,090,578 + Psyr_0956 0.34 +1.0
1,090,578 + Psyr_0956 0.34 +3.8
1,090,578 + Psyr_0956 0.34 -2.8
1,090,578 + Psyr_0956 0.34 -1.9
1,090,578 + Psyr_0956 0.34 +1.0
1,090,579 - Psyr_0956 0.34 +3.8
1,090,579 - Psyr_0956 0.34 +3.1
1,090,579 - Psyr_0956 0.34 +2.8
1,090,579 - Psyr_0956 0.34 +1.5
1,090,639 - Psyr_0956 0.39 -0.5
1,090,785 + Psyr_0956 0.51 -0.8
1,090,785 + Psyr_0956 0.51 +2.8
1,090,785 + Psyr_0956 0.51 -0.0
1,090,789 + Psyr_0956 0.51 -4.7
1,090,789 + Psyr_0956 0.51 -1.1
1,090,789 + Psyr_0956 0.51 +3.7
1,090,929 + Psyr_0956 0.62 -3.0
1,090,929 + Psyr_0956 0.62 -2.3
1,090,929 + Psyr_0956 0.62 +1.5
1,090,929 + Psyr_0956 0.62 +2.3
1,090,930 - Psyr_0956 0.62 -0.0
1,090,930 - Psyr_0956 0.62 -3.7
1,090,930 - Psyr_0956 0.62 -0.5
1,090,930 - Psyr_0956 0.62 -0.4
1,090,930 - Psyr_0956 0.62 -4.6
1,090,930 - Psyr_0956 0.62 -3.5
1,090,930 - Psyr_0956 0.62 -1.2
1,090,930 - Psyr_0956 0.62 -0.8
1,090,930 - Psyr_0956 0.62 +3.4
1,090,930 - Psyr_0956 0.62 -3.2
1,090,930 - Psyr_0956 0.62 -2.4
1,090,930 - Psyr_0956 0.62 -3.6
1,090,981 - Psyr_0956 0.66 -4.6
1,091,017 + Psyr_0956 0.69 -4.9
1,091,017 + Psyr_0956 0.69 -3.6
1,091,018 - Psyr_0956 0.69 +2.0

Or see this region's nucleotide sequence