Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0915

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0914 and Psyr_0915 are separated by 115 nucleotidesPsyr_0915 and Psyr_0916 overlap by 1 nucleotides Psyr_0914: Psyr_0914 - Glycosyl transferase, group 1, at 1,038,365 to 1,039,477 _0914 Psyr_0915: Psyr_0915 - NAD-dependent epimerase/dehydratase, at 1,039,593 to 1,040,489 _0915 Psyr_0916: Psyr_0916 - GDP-mannose 4,6-dehydratase, at 1,040,489 to 1,041,520 _0916 Position (kb) 1039 1040 1041Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 1038.612 kb on + strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.613 kb on - strand, within Psyr_0914at 1038.613 kb on - strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.682 kb on - strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1039.026 kb on + strand, within Psyr_0914at 1039.027 kb on - strand, within Psyr_0914at 1039.089 kb on + strand, within Psyr_0914at 1039.090 kb on - strand, within Psyr_0914at 1039.090 kb on - strand, within Psyr_0914at 1039.352 kb on - strand, within Psyr_0914at 1039.373 kb on + strandat 1039.373 kb on + strandat 1039.373 kb on + strandat 1039.374 kb on - strandat 1039.374 kb on - strandat 1039.444 kb on - strandat 1039.446 kb on + strandat 1039.447 kb on - strandat 1039.447 kb on - strandat 1039.525 kb on + strandat 1039.535 kb on + strandat 1039.555 kb on - strandat 1039.573 kb on - strandat 1039.573 kb on - strandat 1039.580 kb on - strandat 1039.580 kb on - strandat 1039.872 kb on + strand, within Psyr_0915at 1039.872 kb on + strand, within Psyr_0915at 1039.872 kb on + strand, within Psyr_0915at 1039.872 kb on + strand, within Psyr_0915at 1039.873 kb on - strand, within Psyr_0915at 1039.873 kb on - strand, within Psyr_0915at 1039.873 kb on - strand, within Psyr_0915at 1039.990 kb on + strand, within Psyr_0915at 1039.990 kb on + strand, within Psyr_0915at 1039.990 kb on + strand, within Psyr_0915at 1039.990 kb on + strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.074 kb on + strand, within Psyr_0915at 1040.075 kb on - strand, within Psyr_0915at 1040.075 kb on - strand, within Psyr_0915at 1040.135 kb on - strand, within Psyr_0915at 1040.234 kb on - strand, within Psyr_0915at 1040.354 kb on - strand, within Psyr_0915at 1040.354 kb on - strand, within Psyr_0915at 1040.441 kb on + strandat 1040.441 kb on + strandat 1040.442 kb on - strandat 1040.483 kb on + strandat 1040.483 kb on + strandat 1040.483 kb on + strandat 1040.512 kb on + strandat 1040.566 kb on + strandat 1040.664 kb on - strand, within Psyr_0916at 1040.833 kb on + strand, within Psyr_0916at 1040.833 kb on + strand, within Psyr_0916at 1040.833 kb on + strand, within Psyr_0916at 1040.833 kb on + strand, within Psyr_0916at 1040.833 kb on + strand, within Psyr_0916at 1040.833 kb on + strand, within Psyr_0916at 1040.833 kb on + strand, within Psyr_0916at 1040.833 kb on + strand, within Psyr_0916at 1040.833 kb on + strand, within Psyr_0916at 1040.833 kb on + strand, within Psyr_0916at 1040.834 kb on - strand, within Psyr_0916at 1040.844 kb on + strand, within Psyr_0916at 1040.844 kb on + strand, within Psyr_0916at 1040.844 kb on + strand, within Psyr_0916at 1040.845 kb on - strand, within Psyr_0916at 1040.845 kb on - strand, within Psyr_0916at 1040.845 kb on - strand, within Psyr_0916at 1040.845 kb on - strand, within Psyr_0916at 1041.019 kb on - strand, within Psyr_0916at 1041.030 kb on + strand, within Psyr_0916at 1041.087 kb on + strand, within Psyr_0916at 1041.104 kb on + strand, within Psyr_0916at 1041.104 kb on + strand, within Psyr_0916at 1041.104 kb on + strand, within Psyr_0916at 1041.105 kb on - strand, within Psyr_0916at 1041.105 kb on - strand, within Psyr_0916at 1041.105 kb on - strand, within Psyr_0916at 1041.285 kb on + strand, within Psyr_0916at 1041.285 kb on + strand, within Psyr_0916at 1041.285 kb on + strand, within Psyr_0916at 1041.285 kb on + strand, within Psyr_0916at 1041.285 kb on + strand, within Psyr_0916at 1041.286 kb on - strand, within Psyr_0916at 1041.286 kb on - strand, within Psyr_0916at 1041.305 kb on - strand, within Psyr_0916at 1041.305 kb on - strand, within Psyr_0916at 1041.348 kb on + strand, within Psyr_0916at 1041.349 kb on - strand, within Psyr_0916at 1041.349 kb on - strand, within Psyr_0916at 1041.367 kb on + strand, within Psyr_0916at 1041.395 kb on + strand, within Psyr_0916at 1041.395 kb on + strand, within Psyr_0916at 1041.395 kb on + strand, within Psyr_0916at 1041.395 kb on + strand, within Psyr_0916at 1041.395 kb on + strand, within Psyr_0916at 1041.395 kb on + strand, within Psyr_0916at 1041.395 kb on + strand, within Psyr_0916at 1041.395 kb on + strand, within Psyr_0916at 1041.396 kb on - strand, within Psyr_0916at 1041.396 kb on - strand, within Psyr_0916at 1041.396 kb on - strand, within Psyr_0916at 1041.396 kb on - strand, within Psyr_0916at 1041.396 kb on - strand, within Psyr_0916at 1041.396 kb on - strand, within Psyr_0916at 1041.396 kb on - strand, within Psyr_0916at 1041.396 kb on - strand, within Psyr_0916at 1041.396 kb on - strand, within Psyr_0916at 1041.397 kb on + strand, within Psyr_0916at 1041.397 kb on + strand, within Psyr_0916at 1041.398 kb on - strand, within Psyr_0916at 1041.430 kb on - strandat 1041.430 kb on - strandat 1041.445 kb on + strandat 1041.447 kb on + strandat 1041.447 kb on + strandat 1041.447 kb on + strandat 1041.448 kb on - strandat 1041.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,038,612 + Psyr_0914 0.22 -1.2
1,038,612 + Psyr_0914 0.22 +0.2
1,038,612 + Psyr_0914 0.22 +1.6
1,038,612 + Psyr_0914 0.22 +1.3
1,038,613 - Psyr_0914 0.22 +6.5
1,038,613 - Psyr_0914 0.22 +3.2
1,038,656 + Psyr_0914 0.26 +3.0
1,038,656 + Psyr_0914 0.26 +5.1
1,038,656 + Psyr_0914 0.26 +3.6
1,038,656 + Psyr_0914 0.26 +4.0
1,038,657 - Psyr_0914 0.26 +6.6
1,038,657 - Psyr_0914 0.26 +2.3
1,038,657 - Psyr_0914 0.26 +7.2
1,038,657 - Psyr_0914 0.26 +1.6
1,038,657 - Psyr_0914 0.26 +4.7
1,038,657 - Psyr_0914 0.26 +2.0
1,038,682 - Psyr_0914 0.28 +2.3
1,038,861 + Psyr_0914 0.45 +1.6
1,038,861 + Psyr_0914 0.45 +1.9
1,038,861 + Psyr_0914 0.45 +1.4
1,038,861 + Psyr_0914 0.45 +1.3
1,038,862 - Psyr_0914 0.45 +6.3
1,038,862 - Psyr_0914 0.45 +3.2
1,038,862 - Psyr_0914 0.45 +2.5
1,038,862 - Psyr_0914 0.45 +1.5
1,038,862 - Psyr_0914 0.45 +2.8
1,038,862 - Psyr_0914 0.45 +0.2
1,039,026 + Psyr_0914 0.59 +4.2
1,039,027 - Psyr_0914 0.59 +3.2
1,039,089 + Psyr_0914 0.65 +4.7
1,039,090 - Psyr_0914 0.65 +4.1
1,039,090 - Psyr_0914 0.65 +1.1
1,039,352 - Psyr_0914 0.89 -3.1
1,039,373 + +1.8
1,039,373 + +3.4
1,039,373 + +3.3
1,039,374 - +2.6
1,039,374 - +0.5
1,039,444 - +4.4
1,039,446 + +5.3
1,039,447 - +2.6
1,039,447 - -1.6
1,039,525 + -2.0
1,039,535 + +0.0
1,039,555 - -2.3
1,039,573 - +0.4
1,039,573 - +1.6
1,039,580 - +0.1
1,039,580 - -4.3
1,039,872 + Psyr_0915 0.31 -1.0
1,039,872 + Psyr_0915 0.31 +5.2
1,039,872 + Psyr_0915 0.31 +3.1
1,039,872 + Psyr_0915 0.31 +1.6
1,039,873 - Psyr_0915 0.31 +1.4
1,039,873 - Psyr_0915 0.31 +5.1
1,039,873 - Psyr_0915 0.31 +3.0
1,039,990 + Psyr_0915 0.44 +4.6
1,039,990 + Psyr_0915 0.44 +3.0
1,039,990 + Psyr_0915 0.44 +0.2
1,039,990 + Psyr_0915 0.44 +0.3
1,039,991 - Psyr_0915 0.44 +4.4
1,039,991 - Psyr_0915 0.44 +3.5
1,039,991 - Psyr_0915 0.44 +1.1
1,039,991 - Psyr_0915 0.44 +1.6
1,039,991 - Psyr_0915 0.44 +6.1
1,039,991 - Psyr_0915 0.44 +5.6
1,039,991 - Psyr_0915 0.44 +3.2
1,039,991 - Psyr_0915 0.44 +3.8
1,040,047 + Psyr_0915 0.51 -0.6
1,040,047 + Psyr_0915 0.51 +2.0
1,040,047 + Psyr_0915 0.51 +3.4
1,040,047 + Psyr_0915 0.51 -0.2
1,040,047 + Psyr_0915 0.51 -1.8
1,040,047 + Psyr_0915 0.51 +1.2
1,040,047 + Psyr_0915 0.51 +2.0
1,040,047 + Psyr_0915 0.51 +2.6
1,040,047 + Psyr_0915 0.51 -0.9
1,040,047 + Psyr_0915 0.51 +4.1
1,040,047 + Psyr_0915 0.51 +1.0
1,040,047 + Psyr_0915 0.51 +3.9
1,040,048 - Psyr_0915 0.51 +1.6
1,040,048 - Psyr_0915 0.51 +7.0
1,040,048 - Psyr_0915 0.51 +5.8
1,040,048 - Psyr_0915 0.51 +4.6
1,040,048 - Psyr_0915 0.51 +4.3
1,040,048 - Psyr_0915 0.51 +1.6
1,040,048 - Psyr_0915 0.51 +6.8
1,040,048 - Psyr_0915 0.51 +3.7
1,040,048 - Psyr_0915 0.51 +4.1
1,040,048 - Psyr_0915 0.51 +0.9
1,040,074 + Psyr_0915 0.54 +4.9
1,040,075 - Psyr_0915 0.54 +6.3
1,040,075 - Psyr_0915 0.54 +1.9
1,040,135 - Psyr_0915 0.60 +2.4
1,040,234 - Psyr_0915 0.71 +3.6
1,040,354 - Psyr_0915 0.85 +3.0
1,040,354 - Psyr_0915 0.85 -1.4
1,040,441 + -3.0
1,040,441 + -0.0
1,040,442 - -0.5
1,040,483 + -4.6
1,040,483 + -2.6
1,040,483 + -0.0
1,040,512 + -0.0
1,040,566 + -2.0
1,040,664 - Psyr_0916 0.17 +2.0
1,040,833 + Psyr_0916 0.33 -2.5
1,040,833 + Psyr_0916 0.33 +2.6
1,040,833 + Psyr_0916 0.33 -0.1
1,040,833 + Psyr_0916 0.33 -2.5
1,040,833 + Psyr_0916 0.33 -0.3
1,040,833 + Psyr_0916 0.33 -1.0
1,040,833 + Psyr_0916 0.33 +2.3
1,040,833 + Psyr_0916 0.33 -2.3
1,040,833 + Psyr_0916 0.33 +1.0
1,040,833 + Psyr_0916 0.33 -0.0
1,040,834 - Psyr_0916 0.33 -0.0
1,040,844 + Psyr_0916 0.34 +3.7
1,040,844 + Psyr_0916 0.34 -2.5
1,040,844 + Psyr_0916 0.34 +0.8
1,040,845 - Psyr_0916 0.34 +0.6
1,040,845 - Psyr_0916 0.34 +1.4
1,040,845 - Psyr_0916 0.34 +0.8
1,040,845 - Psyr_0916 0.34 +2.5
1,041,019 - Psyr_0916 0.51 +0.4
1,041,030 + Psyr_0916 0.52 -0.8
1,041,087 + Psyr_0916 0.58 +3.0
1,041,104 + Psyr_0916 0.60 -0.1
1,041,104 + Psyr_0916 0.60 -1.2
1,041,104 + Psyr_0916 0.60 -2.3
1,041,105 - Psyr_0916 0.60 +2.5
1,041,105 - Psyr_0916 0.60 +3.9
1,041,105 - Psyr_0916 0.60 +1.1
1,041,285 + Psyr_0916 0.77 -1.3
1,041,285 + Psyr_0916 0.77 +0.2
1,041,285 + Psyr_0916 0.77 -2.6
1,041,285 + Psyr_0916 0.77 -0.3
1,041,285 + Psyr_0916 0.77 +2.8
1,041,286 - Psyr_0916 0.77 +0.4
1,041,286 - Psyr_0916 0.77 +0.3
1,041,305 - Psyr_0916 0.79 +0.6
1,041,305 - Psyr_0916 0.79 +5.5
1,041,348 + Psyr_0916 0.83 +1.6
1,041,349 - Psyr_0916 0.83 +3.6
1,041,349 - Psyr_0916 0.83 +2.1
1,041,367 + Psyr_0916 0.85 -0.0
1,041,395 + Psyr_0916 0.88 -2.6
1,041,395 + Psyr_0916 0.88 -4.1
1,041,395 + Psyr_0916 0.88 +2.0
1,041,395 + Psyr_0916 0.88 +2.3
1,041,395 + Psyr_0916 0.88 +2.6
1,041,395 + Psyr_0916 0.88 -0.0
1,041,395 + Psyr_0916 0.88 -0.0
1,041,395 + Psyr_0916 0.88 -3.0
1,041,396 - Psyr_0916 0.88 +3.3
1,041,396 - Psyr_0916 0.88 -1.0
1,041,396 - Psyr_0916 0.88 +1.6
1,041,396 - Psyr_0916 0.88 -1.4
1,041,396 - Psyr_0916 0.88 +2.0
1,041,396 - Psyr_0916 0.88 +2.3
1,041,396 - Psyr_0916 0.88 -2.9
1,041,396 - Psyr_0916 0.88 -2.3
1,041,396 - Psyr_0916 0.88 +0.2
1,041,397 + Psyr_0916 0.88 -1.0
1,041,397 + Psyr_0916 0.88 -4.2
1,041,398 - Psyr_0916 0.88 -0.9
1,041,430 - -2.6
1,041,430 - -3.2
1,041,445 + -1.2
1,041,447 + -0.0
1,041,447 + -1.8
1,041,447 + +3.6
1,041,448 - +3.0
1,041,448 - -0.8

Or see this region's nucleotide sequence