Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0906 and Psyr_0907 are separated by 158 nucleotides Psyr_0907 and Psyr_0908 are separated by 131 nucleotides Psyr_0908 and Psyr_0909 are separated by 130 nucleotides
Psyr_0906: Psyr_0906 - Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer, at 1,026,969 to 1,028,849
_0906
Psyr_0907: Psyr_0907 - conserved hypothetical protein, at 1,029,008 to 1,029,271
_0907
Psyr_0908: Psyr_0908 - FMN-dependent alpha-hydroxy acid dehydrogenase, at 1,029,403 to 1,030,545
_0908
Psyr_0909: Psyr_0909 - transcriptional regulator, LysR family, at 1,030,676 to 1,031,572
_0909
Position (kb) 1029
1030
1031 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 1028.548 kb on + strand, within Psyr_0906 at 1028.704 kb on + strand at 1028.704 kb on + strand at 1028.745 kb on - strand at 1028.768 kb on + strand at 1028.853 kb on + strand at 1028.853 kb on + strand at 1028.853 kb on + strand at 1028.853 kb on + strand at 1028.853 kb on + strand at 1028.853 kb on + strand at 1028.854 kb on - strand at 1028.854 kb on - strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.888 kb on - strand at 1028.919 kb on + strand at 1028.919 kb on + strand at 1028.919 kb on + strand at 1028.919 kb on + strand at 1028.920 kb on - strand at 1029.076 kb on + strand, within Psyr_0907 at 1029.076 kb on + strand, within Psyr_0907 at 1029.076 kb on + strand, within Psyr_0907 at 1029.077 kb on - strand, within Psyr_0907 at 1029.077 kb on - strand, within Psyr_0907 at 1029.258 kb on - strand at 1029.258 kb on - strand at 1029.265 kb on + strand at 1029.265 kb on + strand at 1029.326 kb on + strand at 1029.326 kb on + strand at 1029.326 kb on + strand at 1029.326 kb on + strand at 1029.326 kb on + strand at 1029.327 kb on - strand at 1029.327 kb on - strand at 1029.327 kb on - strand at 1029.498 kb on + strand at 1029.507 kb on + strand at 1029.507 kb on + strand at 1029.507 kb on + strand at 1029.508 kb on - strand at 1029.508 kb on - strand at 1029.887 kb on + strand, within Psyr_0908 at 1029.887 kb on + strand, within Psyr_0908 at 1029.887 kb on + strand, within Psyr_0908 at 1029.887 kb on + strand, within Psyr_0908 at 1029.887 kb on + strand, within Psyr_0908 at 1029.887 kb on + strand, within Psyr_0908 at 1029.887 kb on + strand, within Psyr_0908 at 1029.887 kb on + strand, within Psyr_0908 at 1029.887 kb on + strand, within Psyr_0908 at 1029.888 kb on - strand, within Psyr_0908 at 1029.888 kb on - strand, within Psyr_0908 at 1029.888 kb on - strand, within Psyr_0908 at 1029.888 kb on - strand, within Psyr_0908 at 1029.888 kb on - strand, within Psyr_0908 at 1029.888 kb on - strand, within Psyr_0908 at 1029.918 kb on - strand, within Psyr_0908 at 1029.928 kb on - strand, within Psyr_0908 at 1030.019 kb on + strand, within Psyr_0908 at 1030.019 kb on + strand, within Psyr_0908 at 1030.020 kb on - strand, within Psyr_0908 at 1030.020 kb on - strand, within Psyr_0908 at 1030.160 kb on + strand, within Psyr_0908 at 1030.160 kb on + strand, within Psyr_0908 at 1030.199 kb on - strand, within Psyr_0908 at 1030.199 kb on - strand, within Psyr_0908 at 1030.199 kb on - strand, within Psyr_0908 at 1030.295 kb on + strand, within Psyr_0908 at 1030.295 kb on + strand, within Psyr_0908 at 1030.295 kb on + strand, within Psyr_0908 at 1030.295 kb on + strand, within Psyr_0908 at 1030.295 kb on + strand, within Psyr_0908 at 1030.295 kb on + strand, within Psyr_0908 at 1030.295 kb on + strand, within Psyr_0908 at 1030.295 kb on + strand, within Psyr_0908 at 1030.295 kb on + strand, within Psyr_0908 at 1030.296 kb on - strand, within Psyr_0908 at 1030.296 kb on - strand, within Psyr_0908 at 1030.296 kb on - strand, within Psyr_0908 at 1030.296 kb on - strand, within Psyr_0908 at 1030.296 kb on - strand, within Psyr_0908 at 1030.457 kb on + strand at 1030.457 kb on + strand at 1030.457 kb on + strand at 1030.458 kb on - strand at 1030.475 kb on + strand at 1030.475 kb on + strand at 1030.475 kb on + strand at 1030.475 kb on + strand at 1030.475 kb on + strand at 1030.475 kb on + strand at 1030.476 kb on - strand at 1030.476 kb on - strand at 1030.476 kb on - strand at 1030.476 kb on - strand at 1030.476 kb on - strand at 1030.476 kb on - strand at 1030.521 kb on - strand at 1030.539 kb on + strand at 1030.539 kb on + strand at 1030.540 kb on - strand at 1030.540 kb on - strand at 1030.540 kb on - strand at 1030.564 kb on + strand at 1030.564 kb on + strand at 1030.565 kb on - strand at 1030.565 kb on - strand at 1030.570 kb on + strand at 1030.570 kb on + strand at 1030.713 kb on + strand at 1030.713 kb on + strand at 1030.723 kb on + strand at 1030.723 kb on + strand at 1031.147 kb on + strand, within Psyr_0909 at 1031.161 kb on + strand, within Psyr_0909 at 1031.356 kb on + strand, within Psyr_0909 at 1031.356 kb on + strand, within Psyr_0909 at 1031.357 kb on - strand, within Psyr_0909 at 1031.424 kb on - strand, within Psyr_0909 at 1031.476 kb on + strand, within Psyr_0909 at 1031.476 kb on + strand, within Psyr_0909 at 1031.476 kb on + strand, within Psyr_0909 at 1031.476 kb on + strand, within Psyr_0909 at 1031.476 kb on + strand, within Psyr_0909 at 1031.476 kb on + strand, within Psyr_0909 at 1031.476 kb on + strand, within Psyr_0909 at 1031.476 kb on + strand, within Psyr_0909 at 1031.476 kb on + strand, within Psyr_0909 at 1031.477 kb on - strand, within Psyr_0909 at 1031.477 kb on - strand, within Psyr_0909 at 1031.477 kb on - strand, within Psyr_0909 at 1031.477 kb on - strand, within Psyr_0909 at 1031.477 kb on - strand, within Psyr_0909
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 1,028,548 + Psyr_0906 0.84 +0.1 1,028,704 + -0.8 1,028,704 + -2.3 1,028,745 - -2.8 1,028,768 + +1.3 1,028,853 + -1.8 1,028,853 + +4.6 1,028,853 + +3.1 1,028,853 + -0.5 1,028,853 + +0.4 1,028,853 + -0.4 1,028,854 - -0.0 1,028,854 - -0.0 1,028,881 + +1.5 1,028,881 + -2.3 1,028,881 + +1.8 1,028,881 + +1.6 1,028,881 + +0.3 1,028,881 + -1.3 1,028,881 + -0.9 1,028,881 + -0.3 1,028,881 + +1.6 1,028,881 + -2.2 1,028,881 + -1.4 1,028,882 - +3.1 1,028,882 - -0.0 1,028,882 - -0.0 1,028,882 - -0.1 1,028,882 - -1.4 1,028,882 - +3.0 1,028,882 - -2.6 1,028,883 + +2.0 1,028,883 + +0.1 1,028,883 + -1.0 1,028,883 + +0.3 1,028,883 + +2.0 1,028,883 + -2.3 1,028,883 + +3.3 1,028,883 + -0.1 1,028,883 + +5.0 1,028,883 + -0.6 1,028,883 + +0.3 1,028,883 + +3.0 1,028,883 + -3.3 1,028,883 + +0.4 1,028,883 + -1.1 1,028,883 + -0.6 1,028,883 + -0.0 1,028,883 + +3.8 1,028,883 + +3.7 1,028,884 - +0.5 1,028,884 - -4.2 1,028,884 - -0.0 1,028,884 - -1.2 1,028,884 - -2.2 1,028,884 - -5.2 1,028,884 - -2.6 1,028,884 - -0.0 1,028,884 - +3.1 1,028,884 - -2.3 1,028,884 - -3.3 1,028,884 - -0.0 1,028,884 - +1.6 1,028,884 - -2.0 1,028,884 - -2.7 1,028,884 - -0.0 1,028,888 - -2.2 1,028,919 + -1.4 1,028,919 + -0.1 1,028,919 + -1.1 1,028,919 + -1.7 1,028,920 - +4.1 1,029,076 + Psyr_0907 0.26 -0.7 1,029,076 + Psyr_0907 0.26 -0.6 1,029,076 + Psyr_0907 0.26 +2.8 1,029,077 - Psyr_0907 0.26 -2.6 1,029,077 - Psyr_0907 0.26 +0.8 1,029,258 - +4.0 1,029,258 - +0.3 1,029,265 + -2.5 1,029,265 + -2.2 1,029,326 + -0.0 1,029,326 + +1.6 1,029,326 + +2.8 1,029,326 + -0.8 1,029,326 + +3.3 1,029,327 - +2.6 1,029,327 - -1.5 1,029,327 - +2.0 1,029,498 + +3.4 1,029,507 + +1.1 1,029,507 + -3.2 1,029,507 + +0.3 1,029,508 - +1.9 1,029,508 - -1.8 1,029,887 + Psyr_0908 0.42 +3.0 1,029,887 + Psyr_0908 0.42 -0.0 1,029,887 + Psyr_0908 0.42 +2.1 1,029,887 + Psyr_0908 0.42 -0.7 1,029,887 + Psyr_0908 0.42 +2.3 1,029,887 + Psyr_0908 0.42 -0.9 1,029,887 + Psyr_0908 0.42 -3.7 1,029,887 + Psyr_0908 0.42 +0.8 1,029,887 + Psyr_0908 0.42 -2.3 1,029,888 - Psyr_0908 0.42 +2.6 1,029,888 - Psyr_0908 0.42 +2.3 1,029,888 - Psyr_0908 0.42 -0.7 1,029,888 - Psyr_0908 0.42 +3.6 1,029,888 - Psyr_0908 0.42 -4.8 1,029,888 - Psyr_0908 0.42 +0.1 1,029,918 - Psyr_0908 0.45 -1.7 1,029,928 - Psyr_0908 0.46 +1.6 1,030,019 + Psyr_0908 0.54 +0.1 1,030,019 + Psyr_0908 0.54 +4.1 1,030,020 - Psyr_0908 0.54 +3.3 1,030,020 - Psyr_0908 0.54 +3.9 1,030,160 + Psyr_0908 0.66 +0.8 1,030,160 + Psyr_0908 0.66 -0.0 1,030,199 - Psyr_0908 0.70 -2.7 1,030,199 - Psyr_0908 0.70 +0.4 1,030,199 - Psyr_0908 0.70 +3.7 1,030,295 + Psyr_0908 0.78 -3.0 1,030,295 + Psyr_0908 0.78 +3.7 1,030,295 + Psyr_0908 0.78 -3.3 1,030,295 + Psyr_0908 0.78 -4.2 1,030,295 + Psyr_0908 0.78 -0.2 1,030,295 + Psyr_0908 0.78 -1.4 1,030,295 + Psyr_0908 0.78 -1.6 1,030,295 + Psyr_0908 0.78 -0.0 1,030,295 + Psyr_0908 0.78 -0.0 1,030,296 - Psyr_0908 0.78 -0.3 1,030,296 - Psyr_0908 0.78 -1.3 1,030,296 - Psyr_0908 0.78 +1.4 1,030,296 - Psyr_0908 0.78 +1.1 1,030,296 - Psyr_0908 0.78 -1.2 1,030,457 + +2.0 1,030,457 + -1.5 1,030,457 + -2.5 1,030,458 - -1.1 1,030,475 + -1.1 1,030,475 + -2.2 1,030,475 + -4.0 1,030,475 + +4.1 1,030,475 + -1.2 1,030,475 + -3.3 1,030,476 - -0.9 1,030,476 - -1.3 1,030,476 - +0.1 1,030,476 - -1.6 1,030,476 - -1.1 1,030,476 - +3.1 1,030,521 - -2.0 1,030,539 + -1.8 1,030,539 + -2.4 1,030,540 - +3.6 1,030,540 - +3.1 1,030,540 - -0.6 1,030,564 + -0.0 1,030,564 + +1.6 1,030,565 - +3.8 1,030,565 - +2.6 1,030,570 + -2.3 1,030,570 + -0.4 1,030,713 + -1.5 1,030,713 + -3.3 1,030,723 + +1.2 1,030,723 + -0.8 1,031,147 + Psyr_0909 0.53 +0.7 1,031,161 + Psyr_0909 0.54 -1.2 1,031,356 + Psyr_0909 0.76 -0.8 1,031,356 + Psyr_0909 0.76 +3.1 1,031,357 - Psyr_0909 0.76 -2.2 1,031,424 - Psyr_0909 0.83 +3.1 1,031,476 + Psyr_0909 0.89 -0.9 1,031,476 + Psyr_0909 0.89 -1.9 1,031,476 + Psyr_0909 0.89 -1.3 1,031,476 + Psyr_0909 0.89 +0.5 1,031,476 + Psyr_0909 0.89 -0.5 1,031,476 + Psyr_0909 0.89 +0.2 1,031,476 + Psyr_0909 0.89 -2.0 1,031,476 + Psyr_0909 0.89 -1.0 1,031,476 + Psyr_0909 0.89 -0.0 1,031,477 - Psyr_0909 0.89 -2.8 1,031,477 - Psyr_0909 0.89 -0.2 1,031,477 - Psyr_0909 0.89 +1.0 1,031,477 - Psyr_0909 0.89 +3.6 1,031,477 - Psyr_0909 0.89 -0.3
Or see this region's nucleotide sequence