Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0894

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0893 and Psyr_0894 are separated by 187 nucleotidesPsyr_0894 and Psyr_0895 overlap by 1 nucleotidesPsyr_0895 and Psyr_0896 are separated by 115 nucleotides Psyr_0893: Psyr_0893 - hypothetical protein, at 1,013,760 to 1,014,335 _0893 Psyr_0894: Psyr_0894 - PilT protein, N-terminal, at 1,014,523 to 1,014,927 _0894 Psyr_0895: Psyr_0895 - SpoVT/AbrB-like protein, at 1,014,927 to 1,015,157 _0895 Psyr_0896: Psyr_0896 - Aldose 1-epimerase, at 1,015,273 to 1,016,154 _0896 Position (kb) 1014 1015Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1013.677 kb on + strandat 1013.677 kb on + strandat 1013.677 kb on + strandat 1013.678 kb on - strandat 1013.696 kb on + strandat 1013.697 kb on - strandat 1013.697 kb on - strandat 1013.697 kb on - strandat 1013.719 kb on + strandat 1013.720 kb on - strandat 1013.765 kb on + strandat 1013.818 kb on + strand, within Psyr_0893at 1013.818 kb on + strand, within Psyr_0893at 1013.992 kb on + strand, within Psyr_0893at 1013.993 kb on - strand, within Psyr_0893at 1014.028 kb on + strand, within Psyr_0893at 1014.029 kb on - strand, within Psyr_0893at 1014.050 kb on - strand, within Psyr_0893at 1014.064 kb on + strand, within Psyr_0893at 1014.088 kb on + strand, within Psyr_0893at 1014.089 kb on - strand, within Psyr_0893at 1014.126 kb on + strand, within Psyr_0893at 1014.126 kb on + strand, within Psyr_0893at 1014.126 kb on + strand, within Psyr_0893at 1014.126 kb on + strand, within Psyr_0893at 1014.126 kb on + strand, within Psyr_0893at 1014.127 kb on - strand, within Psyr_0893at 1014.127 kb on - strand, within Psyr_0893at 1014.127 kb on - strand, within Psyr_0893at 1014.127 kb on - strand, within Psyr_0893at 1014.127 kb on - strand, within Psyr_0893at 1014.127 kb on - strand, within Psyr_0893at 1014.127 kb on - strand, within Psyr_0893at 1014.127 kb on - strand, within Psyr_0893at 1014.127 kb on - strand, within Psyr_0893at 1014.127 kb on - strand, within Psyr_0893at 1014.138 kb on - strand, within Psyr_0893at 1014.150 kb on - strand, within Psyr_0893at 1014.168 kb on - strand, within Psyr_0893at 1014.194 kb on + strand, within Psyr_0893at 1014.194 kb on + strand, within Psyr_0893at 1014.194 kb on + strand, within Psyr_0893at 1014.194 kb on + strand, within Psyr_0893at 1014.194 kb on + strand, within Psyr_0893at 1014.194 kb on + strand, within Psyr_0893at 1014.194 kb on + strand, within Psyr_0893at 1014.194 kb on + strand, within Psyr_0893at 1014.195 kb on - strand, within Psyr_0893at 1014.195 kb on - strand, within Psyr_0893at 1014.195 kb on - strand, within Psyr_0893at 1014.195 kb on - strand, within Psyr_0893at 1014.230 kb on + strand, within Psyr_0893at 1014.230 kb on + strand, within Psyr_0893at 1014.231 kb on - strand, within Psyr_0893at 1014.231 kb on - strand, within Psyr_0893at 1014.231 kb on - strand, within Psyr_0893at 1014.267 kb on - strand, within Psyr_0893at 1014.267 kb on - strand, within Psyr_0893at 1014.494 kb on + strandat 1014.494 kb on + strandat 1014.494 kb on + strandat 1014.495 kb on - strandat 1014.495 kb on - strandat 1014.495 kb on - strandat 1014.532 kb on + strandat 1014.544 kb on + strandat 1014.604 kb on + strand, within Psyr_0894at 1014.604 kb on + strand, within Psyr_0894at 1014.605 kb on - strand, within Psyr_0894at 1014.605 kb on - strand, within Psyr_0894at 1014.605 kb on - strand, within Psyr_0894at 1014.638 kb on + strand, within Psyr_0894at 1014.690 kb on + strand, within Psyr_0894at 1014.714 kb on - strand, within Psyr_0894at 1014.794 kb on + strand, within Psyr_0894at 1014.794 kb on + strand, within Psyr_0894at 1014.795 kb on - strand, within Psyr_0894at 1014.796 kb on + strand, within Psyr_0894at 1014.796 kb on + strand, within Psyr_0894at 1014.796 kb on + strand, within Psyr_0894at 1014.796 kb on + strand, within Psyr_0894at 1014.796 kb on + strand, within Psyr_0894at 1014.797 kb on - strand, within Psyr_0894at 1014.797 kb on - strand, within Psyr_0894at 1014.797 kb on - strand, within Psyr_0894at 1014.797 kb on - strand, within Psyr_0894at 1014.797 kb on - strand, within Psyr_0894at 1014.825 kb on + strand, within Psyr_0894at 1014.825 kb on + strand, within Psyr_0894at 1014.826 kb on - strand, within Psyr_0894at 1014.826 kb on - strand, within Psyr_0894at 1014.826 kb on - strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.829 kb on + strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.830 kb on - strand, within Psyr_0894at 1014.883 kb on + strand, within Psyr_0894at 1014.884 kb on - strand, within Psyr_0894at 1014.884 kb on - strand, within Psyr_0894at 1014.884 kb on - strand, within Psyr_0894at 1014.884 kb on - strand, within Psyr_0894at 1014.885 kb on + strand, within Psyr_0894at 1014.885 kb on + strand, within Psyr_0894at 1014.885 kb on + strand, within Psyr_0894at 1014.886 kb on - strand, within Psyr_0894at 1014.886 kb on - strand, within Psyr_0894at 1014.886 kb on - strand, within Psyr_0894at 1014.886 kb on - strand, within Psyr_0894at 1014.888 kb on + strandat 1014.917 kb on + strandat 1014.917 kb on + strandat 1014.917 kb on + strandat 1014.917 kb on + strandat 1014.917 kb on + strandat 1014.917 kb on + strandat 1014.917 kb on + strandat 1014.917 kb on + strandat 1014.918 kb on - strandat 1014.918 kb on - strandat 1014.918 kb on - strandat 1014.918 kb on - strandat 1014.918 kb on - strandat 1014.918 kb on - strandat 1014.918 kb on - strandat 1014.918 kb on - strandat 1015.037 kb on + strand, within Psyr_0895at 1015.037 kb on + strand, within Psyr_0895at 1015.037 kb on + strand, within Psyr_0895at 1015.038 kb on - strand, within Psyr_0895at 1015.038 kb on - strand, within Psyr_0895at 1015.038 kb on - strand, within Psyr_0895at 1015.038 kb on - strand, within Psyr_0895at 1015.059 kb on + strand, within Psyr_0895at 1015.059 kb on + strand, within Psyr_0895at 1015.060 kb on - strand, within Psyr_0895at 1015.061 kb on + strand, within Psyr_0895at 1015.061 kb on + strand, within Psyr_0895at 1015.062 kb on - strand, within Psyr_0895at 1015.062 kb on - strand, within Psyr_0895at 1015.062 kb on - strand, within Psyr_0895at 1015.062 kb on - strand, within Psyr_0895at 1015.062 kb on - strand, within Psyr_0895at 1015.062 kb on - strand, within Psyr_0895at 1015.192 kb on + strandat 1015.192 kb on + strandat 1015.193 kb on - strandat 1015.193 kb on - strandat 1015.198 kb on + strandat 1015.198 kb on + strandat 1015.198 kb on + strandat 1015.198 kb on + strandat 1015.244 kb on - strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.270 kb on + strandat 1015.271 kb on - strandat 1015.271 kb on - strandat 1015.271 kb on - strandat 1015.271 kb on - strandat 1015.271 kb on - strandat 1015.271 kb on - strandat 1015.271 kb on - strandat 1015.271 kb on - strandat 1015.271 kb on - strandat 1015.271 kb on - strandat 1015.298 kb on + strandat 1015.445 kb on + strand, within Psyr_0896at 1015.446 kb on - strand, within Psyr_0896at 1015.446 kb on - strand, within Psyr_0896at 1015.446 kb on - strand, within Psyr_0896at 1015.446 kb on - strand, within Psyr_0896at 1015.683 kb on - strand, within Psyr_0896at 1015.772 kb on + strand, within Psyr_0896at 1015.773 kb on - strand, within Psyr_0896at 1015.773 kb on - strand, within Psyr_0896

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
1,013,677 + -2.2
1,013,677 + -4.0
1,013,677 + +1.6
1,013,678 - -1.8
1,013,696 + -2.5
1,013,697 - +2.0
1,013,697 - -0.0
1,013,697 - -0.0
1,013,719 + -1.2
1,013,720 - -0.0
1,013,765 + +0.7
1,013,818 + Psyr_0893 0.10 -2.2
1,013,818 + Psyr_0893 0.10 +1.6
1,013,992 + Psyr_0893 0.40 -3.6
1,013,993 - Psyr_0893 0.40 -0.3
1,014,028 + Psyr_0893 0.47 +3.1
1,014,029 - Psyr_0893 0.47 -1.8
1,014,050 - Psyr_0893 0.50 +2.3
1,014,064 + Psyr_0893 0.53 +4.4
1,014,088 + Psyr_0893 0.57 -0.6
1,014,089 - Psyr_0893 0.57 +2.0
1,014,126 + Psyr_0893 0.64 +3.4
1,014,126 + Psyr_0893 0.64 +3.0
1,014,126 + Psyr_0893 0.64 +1.6
1,014,126 + Psyr_0893 0.64 +1.0
1,014,126 + Psyr_0893 0.64 -1.0
1,014,127 - Psyr_0893 0.64 -1.8
1,014,127 - Psyr_0893 0.64 -3.4
1,014,127 - Psyr_0893 0.64 +1.0
1,014,127 - Psyr_0893 0.64 +2.0
1,014,127 - Psyr_0893 0.64 +3.0
1,014,127 - Psyr_0893 0.64 -0.0
1,014,127 - Psyr_0893 0.64 +4.1
1,014,127 - Psyr_0893 0.64 -4.3
1,014,127 - Psyr_0893 0.64 -1.6
1,014,127 - Psyr_0893 0.64 +2.6
1,014,138 - Psyr_0893 0.66 -2.0
1,014,150 - Psyr_0893 0.68 -0.0
1,014,168 - Psyr_0893 0.71 +0.5
1,014,194 + Psyr_0893 0.75 -3.8
1,014,194 + Psyr_0893 0.75 -0.7
1,014,194 + Psyr_0893 0.75 +3.3
1,014,194 + Psyr_0893 0.75 +3.3
1,014,194 + Psyr_0893 0.75 +3.1
1,014,194 + Psyr_0893 0.75 +4.4
1,014,194 + Psyr_0893 0.75 -2.7
1,014,194 + Psyr_0893 0.75 -2.1
1,014,195 - Psyr_0893 0.76 +2.0
1,014,195 - Psyr_0893 0.76 -1.7
1,014,195 - Psyr_0893 0.76 -1.7
1,014,195 - Psyr_0893 0.76 +3.9
1,014,230 + Psyr_0893 0.82 -0.0
1,014,230 + Psyr_0893 0.82 -2.2
1,014,231 - Psyr_0893 0.82 -0.4
1,014,231 - Psyr_0893 0.82 +2.8
1,014,231 - Psyr_0893 0.82 +3.4
1,014,267 - Psyr_0893 0.88 -0.8
1,014,267 - Psyr_0893 0.88 -0.0
1,014,494 + +2.6
1,014,494 + +1.0
1,014,494 + -1.3
1,014,495 - -0.0
1,014,495 - -0.9
1,014,495 - -2.5
1,014,532 + -3.0
1,014,544 + -2.1
1,014,604 + Psyr_0894 0.20 -0.2
1,014,604 + Psyr_0894 0.20 -0.0
1,014,605 - Psyr_0894 0.20 -2.1
1,014,605 - Psyr_0894 0.20 -1.1
1,014,605 - Psyr_0894 0.20 -1.1
1,014,638 + Psyr_0894 0.28 -0.0
1,014,690 + Psyr_0894 0.41 -0.6
1,014,714 - Psyr_0894 0.47 +0.2
1,014,794 + Psyr_0894 0.67 -0.0
1,014,794 + Psyr_0894 0.67 -3.4
1,014,795 - Psyr_0894 0.67 +2.6
1,014,796 + Psyr_0894 0.67 +2.0
1,014,796 + Psyr_0894 0.67 -1.1
1,014,796 + Psyr_0894 0.67 -4.0
1,014,796 + Psyr_0894 0.67 -2.1
1,014,796 + Psyr_0894 0.67 -1.6
1,014,797 - Psyr_0894 0.68 +2.6
1,014,797 - Psyr_0894 0.68 -3.2
1,014,797 - Psyr_0894 0.68 -1.3
1,014,797 - Psyr_0894 0.68 +2.3
1,014,797 - Psyr_0894 0.68 -1.2
1,014,825 + Psyr_0894 0.75 +2.0
1,014,825 + Psyr_0894 0.75 -0.8
1,014,826 - Psyr_0894 0.75 +3.3
1,014,826 - Psyr_0894 0.75 -3.0
1,014,826 - Psyr_0894 0.75 +3.7
1,014,829 + Psyr_0894 0.76 +2.0
1,014,829 + Psyr_0894 0.76 -2.7
1,014,829 + Psyr_0894 0.76 +2.3
1,014,829 + Psyr_0894 0.76 -2.3
1,014,829 + Psyr_0894 0.76 -1.2
1,014,829 + Psyr_0894 0.76 -4.0
1,014,829 + Psyr_0894 0.76 +3.0
1,014,829 + Psyr_0894 0.76 +3.1
1,014,829 + Psyr_0894 0.76 -5.0
1,014,829 + Psyr_0894 0.76 -2.3
1,014,829 + Psyr_0894 0.76 -2.8
1,014,830 - Psyr_0894 0.76 +2.8
1,014,830 - Psyr_0894 0.76 -1.9
1,014,830 - Psyr_0894 0.76 -0.4
1,014,830 - Psyr_0894 0.76 +3.3
1,014,830 - Psyr_0894 0.76 -0.0
1,014,830 - Psyr_0894 0.76 +1.2
1,014,830 - Psyr_0894 0.76 -0.0
1,014,830 - Psyr_0894 0.76 -1.2
1,014,830 - Psyr_0894 0.76 -4.2
1,014,830 - Psyr_0894 0.76 +1.0
1,014,830 - Psyr_0894 0.76 +2.3
1,014,830 - Psyr_0894 0.76 -3.4
1,014,883 + Psyr_0894 0.89 +0.4
1,014,884 - Psyr_0894 0.89 -1.1
1,014,884 - Psyr_0894 0.89 -1.3
1,014,884 - Psyr_0894 0.89 -0.7
1,014,884 - Psyr_0894 0.89 -4.9
1,014,885 + Psyr_0894 0.89 +1.6
1,014,885 + Psyr_0894 0.89 -0.2
1,014,885 + Psyr_0894 0.89 +2.0
1,014,886 - Psyr_0894 0.90 -0.3
1,014,886 - Psyr_0894 0.90 +3.1
1,014,886 - Psyr_0894 0.90 -2.7
1,014,886 - Psyr_0894 0.90 -3.4
1,014,888 + -1.4
1,014,917 + +1.6
1,014,917 + -1.2
1,014,917 + -1.6
1,014,917 + -0.5
1,014,917 + -0.0
1,014,917 + +1.6
1,014,917 + +3.9
1,014,917 + -1.9
1,014,918 - +0.8
1,014,918 - -3.3
1,014,918 - +1.0
1,014,918 - +2.8
1,014,918 - +2.3
1,014,918 - +1.0
1,014,918 - +3.3
1,014,918 - +0.1
1,015,037 + Psyr_0895 0.48 -2.0
1,015,037 + Psyr_0895 0.48 -0.0
1,015,037 + Psyr_0895 0.48 -2.3
1,015,038 - Psyr_0895 0.48 -3.3
1,015,038 - Psyr_0895 0.48 -1.6
1,015,038 - Psyr_0895 0.48 -1.2
1,015,038 - Psyr_0895 0.48 -0.0
1,015,059 + Psyr_0895 0.57 +0.7
1,015,059 + Psyr_0895 0.57 +1.5
1,015,060 - Psyr_0895 0.58 +2.3
1,015,061 + Psyr_0895 0.58 -1.9
1,015,061 + Psyr_0895 0.58 -2.4
1,015,062 - Psyr_0895 0.58 -0.1
1,015,062 - Psyr_0895 0.58 -4.2
1,015,062 - Psyr_0895 0.58 +2.8
1,015,062 - Psyr_0895 0.58 -4.2
1,015,062 - Psyr_0895 0.58 +1.0
1,015,062 - Psyr_0895 0.58 -2.0
1,015,192 + -0.0
1,015,192 + -2.0
1,015,193 - -3.7
1,015,193 - -2.0
1,015,198 + -1.6
1,015,198 + -0.5
1,015,198 + -2.2
1,015,198 + -5.7
1,015,244 - -3.3
1,015,270 + -0.6
1,015,270 + +4.3
1,015,270 + -1.7
1,015,270 + -2.0
1,015,270 + +0.3
1,015,270 + -1.6
1,015,270 + -1.0
1,015,270 + -0.6
1,015,270 + +3.0
1,015,270 + -0.5
1,015,270 + -0.0
1,015,270 + +1.0
1,015,270 + -0.8
1,015,270 + +0.3
1,015,270 + +0.1
1,015,270 + -0.8
1,015,270 + +2.3
1,015,271 - -3.0
1,015,271 - -0.0
1,015,271 - -0.0
1,015,271 - -4.7
1,015,271 - +0.2
1,015,271 - -2.8
1,015,271 - -1.8
1,015,271 - -2.2
1,015,271 - -4.3
1,015,271 - -0.0
1,015,298 + -0.6
1,015,445 + Psyr_0896 0.20 -0.0
1,015,446 - Psyr_0896 0.20 +3.0
1,015,446 - Psyr_0896 0.20 +3.0
1,015,446 - Psyr_0896 0.20 -0.4
1,015,446 - Psyr_0896 0.20 -0.0
1,015,683 - Psyr_0896 0.46 +2.0
1,015,772 + Psyr_0896 0.57 -2.3
1,015,773 - Psyr_0896 0.57 +1.0
1,015,773 - Psyr_0896 0.57 -2.8

Or see this region's nucleotide sequence