Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0876 and Psyr_0877 are separated by 24 nucleotides Psyr_0877 and Psyr_0878 are separated by 64 nucleotides
Psyr_0876: Psyr_0876 - TonB-dependent receptor:TonB-dependent receptor, C-terminal, at 997,800 to 1,000,082
_0876
Psyr_0877: Psyr_0877 - outer membrane transport energization protein ExbB, at 1,000,107 to 1,000,757
_0877
Psyr_0878: Psyr_0878 - Phospholipase D/Transphosphatidylase, at 1,000,822 to 1,002,063
_0878
Position (kb) 1000
1001 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 999.119 kb on + strand, within Psyr_0876 at 999.119 kb on + strand, within Psyr_0876 at 999.119 kb on + strand, within Psyr_0876 at 999.163 kb on - strand, within Psyr_0876 at 999.163 kb on - strand, within Psyr_0876 at 999.163 kb on - strand, within Psyr_0876 at 999.163 kb on - strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.274 kb on - strand, within Psyr_0876 at 999.274 kb on - strand, within Psyr_0876 at 999.274 kb on - strand, within Psyr_0876 at 999.274 kb on - strand, within Psyr_0876 at 999.307 kb on - strand, within Psyr_0876 at 999.307 kb on - strand, within Psyr_0876 at 999.337 kb on - strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.381 kb on + strand, within Psyr_0876 at 999.381 kb on + strand, within Psyr_0876 at 999.382 kb on - strand, within Psyr_0876 at 999.382 kb on - strand, within Psyr_0876 at 999.382 kb on - strand, within Psyr_0876 at 999.450 kb on + strand, within Psyr_0876 at 999.451 kb on - strand, within Psyr_0876 at 999.490 kb on - strand, within Psyr_0876 at 999.621 kb on + strand, within Psyr_0876 at 999.621 kb on + strand, within Psyr_0876 at 999.621 kb on + strand, within Psyr_0876 at 999.621 kb on + strand, within Psyr_0876 at 999.621 kb on + strand, within Psyr_0876 at 999.622 kb on - strand, within Psyr_0876 at 999.622 kb on - strand, within Psyr_0876 at 999.622 kb on - strand, within Psyr_0876 at 999.622 kb on - strand, within Psyr_0876 at 999.622 kb on - strand, within Psyr_0876 at 999.624 kb on + strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.633 kb on + strand, within Psyr_0876 at 999.633 kb on + strand, within Psyr_0876 at 999.633 kb on + strand, within Psyr_0876 at 999.634 kb on - strand, within Psyr_0876 at 999.639 kb on + strand, within Psyr_0876 at 999.639 kb on + strand, within Psyr_0876 at 999.639 kb on + strand, within Psyr_0876 at 999.639 kb on + strand, within Psyr_0876 at 999.639 kb on + strand, within Psyr_0876 at 999.640 kb on - strand, within Psyr_0876 at 999.640 kb on - strand, within Psyr_0876 at 999.640 kb on - strand, within Psyr_0876 at 999.722 kb on + strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.778 kb on - strand, within Psyr_0876 at 999.780 kb on + strand, within Psyr_0876 at 999.816 kb on + strand, within Psyr_0876 at 999.816 kb on + strand, within Psyr_0876 at 999.817 kb on - strand, within Psyr_0876 at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.882 kb on + strand at 999.882 kb on + strand at 999.882 kb on + strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.957 kb on + strand at 999.958 kb on - strand at 999.972 kb on + strand at 999.972 kb on + strand at 999.973 kb on - strand at 999.973 kb on - strand at 999.973 kb on - strand at 999.999 kb on + strand at 999.999 kb on + strand at 999.999 kb on + strand at 999.999 kb on + strand at 999.999 kb on + strand at 1000.000 kb on - strand at 1000.000 kb on - strand at 1000.000 kb on - strand at 1000.000 kb on - strand at 1000.029 kb on + strand at 1000.029 kb on + strand at 1000.029 kb on + strand at 1000.029 kb on + strand at 1000.030 kb on - strand at 1000.030 kb on - strand at 1000.030 kb on - strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.141 kb on - strand at 1000.141 kb on - strand at 1000.141 kb on - strand at 1000.149 kb on + strand at 1000.149 kb on + strand at 1000.149 kb on + strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.166 kb on - strand at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.206 kb on + strand, within Psyr_0877 at 1000.206 kb on + strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.389 kb on + strand, within Psyr_0877 at 1000.389 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.832 kb on - strand at 1000.840 kb on + strand at 1000.840 kb on + strand at 1000.841 kb on - strand at 1000.841 kb on - strand at 1000.884 kb on - strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.941 kb on - strand at 1000.941 kb on - strand at 1000.941 kb on - strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.945 kb on - strand at 1000.945 kb on - strand at 1001.053 kb on + strand, within Psyr_0878 at 1001.053 kb on + strand, within Psyr_0878 at 1001.053 kb on + strand, within Psyr_0878 at 1001.053 kb on + strand, within Psyr_0878 at 1001.054 kb on - strand, within Psyr_0878 at 1001.054 kb on - strand, within Psyr_0878 at 1001.230 kb on + strand, within Psyr_0878 at 1001.397 kb on - strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.492 kb on - strand, within Psyr_0878 at 1001.492 kb on - strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.516 kb on - strand, within Psyr_0878 at 1001.606 kb on - strand, within Psyr_0878 at 1001.645 kb on - strand, within Psyr_0878 at 1001.647 kb on + strand, within Psyr_0878 at 1001.647 kb on + strand, within Psyr_0878 at 1001.647 kb on + strand, within Psyr_0878 at 1001.648 kb on - strand, within Psyr_0878
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 999,119 + Psyr_0876 0.58 +2.3 999,119 + Psyr_0876 0.58 +1.0 999,119 + Psyr_0876 0.58 -1.0 999,163 - Psyr_0876 0.60 -1.2 999,163 - Psyr_0876 0.60 -4.2 999,163 - Psyr_0876 0.60 -2.3 999,163 - Psyr_0876 0.60 +1.6 999,273 + Psyr_0876 0.65 -3.1 999,273 + Psyr_0876 0.65 +3.8 999,273 + Psyr_0876 0.65 -0.4 999,273 + Psyr_0876 0.65 -2.0 999,273 + Psyr_0876 0.65 +2.8 999,273 + Psyr_0876 0.65 +1.2 999,274 - Psyr_0876 0.65 -0.2 999,274 - Psyr_0876 0.65 -1.1 999,274 - Psyr_0876 0.65 -0.5 999,274 - Psyr_0876 0.65 +2.0 999,307 - Psyr_0876 0.66 +3.5 999,307 - Psyr_0876 0.66 +4.0 999,337 - Psyr_0876 0.67 -1.2 999,372 + Psyr_0876 0.69 -1.2 999,372 + Psyr_0876 0.69 -1.8 999,372 + Psyr_0876 0.69 +3.8 999,372 + Psyr_0876 0.69 -0.0 999,372 + Psyr_0876 0.69 +1.0 999,372 + Psyr_0876 0.69 -0.5 999,372 + Psyr_0876 0.69 -0.0 999,373 - Psyr_0876 0.69 -0.0 999,373 - Psyr_0876 0.69 +1.6 999,373 - Psyr_0876 0.69 -1.4 999,373 - Psyr_0876 0.69 +3.7 999,373 - Psyr_0876 0.69 -1.8 999,373 - Psyr_0876 0.69 +2.3 999,381 + Psyr_0876 0.69 -4.5 999,381 + Psyr_0876 0.69 +0.3 999,382 - Psyr_0876 0.69 +3.0 999,382 - Psyr_0876 0.69 +0.5 999,382 - Psyr_0876 0.69 +2.6 999,450 + Psyr_0876 0.72 +0.0 999,451 - Psyr_0876 0.72 +1.5 999,490 - Psyr_0876 0.74 +0.4 999,621 + Psyr_0876 0.80 -0.0 999,621 + Psyr_0876 0.80 -1.9 999,621 + Psyr_0876 0.80 -1.4 999,621 + Psyr_0876 0.80 -1.4 999,621 + Psyr_0876 0.80 -0.0 999,622 - Psyr_0876 0.80 -0.4 999,622 - Psyr_0876 0.80 -2.5 999,622 - Psyr_0876 0.80 -2.4 999,622 - Psyr_0876 0.80 +0.9 999,622 - Psyr_0876 0.80 -0.4 999,624 + Psyr_0876 0.80 -3.7 999,625 - Psyr_0876 0.80 +1.6 999,625 - Psyr_0876 0.80 -0.8 999,625 - Psyr_0876 0.80 +1.5 999,625 - Psyr_0876 0.80 +4.4 999,625 - Psyr_0876 0.80 -0.4 999,625 - Psyr_0876 0.80 -4.3 999,625 - Psyr_0876 0.80 -0.0 999,633 + Psyr_0876 0.80 -3.1 999,633 + Psyr_0876 0.80 -2.4 999,633 + Psyr_0876 0.80 +0.2 999,634 - Psyr_0876 0.80 -1.0 999,639 + Psyr_0876 0.81 -2.9 999,639 + Psyr_0876 0.81 -0.0 999,639 + Psyr_0876 0.81 -4.0 999,639 + Psyr_0876 0.81 +3.0 999,639 + Psyr_0876 0.81 +3.0 999,640 - Psyr_0876 0.81 +0.3 999,640 - Psyr_0876 0.81 +0.3 999,640 - Psyr_0876 0.81 +2.0 999,722 + Psyr_0876 0.84 -1.6 999,723 - Psyr_0876 0.84 -0.1 999,723 - Psyr_0876 0.84 +4.7 999,723 - Psyr_0876 0.84 -0.0 999,723 - Psyr_0876 0.84 +4.1 999,723 - Psyr_0876 0.84 -0.0 999,723 - Psyr_0876 0.84 +1.4 999,778 - Psyr_0876 0.87 -1.0 999,780 + Psyr_0876 0.87 -1.5 999,816 + Psyr_0876 0.88 -0.5 999,816 + Psyr_0876 0.88 +1.6 999,817 - Psyr_0876 0.88 +1.0 999,878 + -0.5 999,878 + -2.8 999,878 + +1.0 999,878 + +3.8 999,878 + -1.6 999,878 + -3.5 999,878 + -0.1 999,878 + -1.4 999,879 - +2.8 999,879 - -1.5 999,879 - +2.0 999,879 - +0.1 999,879 - -1.1 999,882 + +0.1 999,882 + -3.5 999,882 + +0.3 999,883 - +1.8 999,883 - -0.0 999,883 - +3.7 999,883 - -0.4 999,883 - -1.0 999,883 - -3.8 999,883 - -0.3 999,883 - +4.5 999,957 + +2.6 999,958 - -3.8 999,972 + -1.9 999,972 + -0.0 999,973 - +2.3 999,973 - -4.8 999,973 - -1.2 999,999 + -1.5 999,999 + -3.2 999,999 + +2.0 999,999 + -1.4 999,999 + -4.8 1,000,000 - -1.1 1,000,000 - -0.0 1,000,000 - -0.7 1,000,000 - -2.4 1,000,029 + -0.7 1,000,029 + +2.3 1,000,029 + -1.8 1,000,029 + -2.1 1,000,030 - -0.3 1,000,030 - +1.4 1,000,030 - -1.8 1,000,140 + -1.9 1,000,140 + -2.0 1,000,140 + -0.1 1,000,140 + -1.4 1,000,140 + -0.0 1,000,140 + +0.3 1,000,140 + -1.9 1,000,140 + -3.2 1,000,141 - -1.4 1,000,141 - +1.0 1,000,141 - -1.2 1,000,149 + +1.0 1,000,149 + +0.5 1,000,149 + +2.1 1,000,150 - -2.0 1,000,150 - +2.6 1,000,150 - +1.6 1,000,150 - +1.6 1,000,150 - +2.0 1,000,150 - +4.2 1,000,166 - -1.2 1,000,197 + Psyr_0877 0.14 -3.9 1,000,197 + Psyr_0877 0.14 +2.5 1,000,197 + Psyr_0877 0.14 -0.0 1,000,197 + Psyr_0877 0.14 +0.6 1,000,197 + Psyr_0877 0.14 -0.6 1,000,197 + Psyr_0877 0.14 +2.8 1,000,198 - Psyr_0877 0.14 +3.0 1,000,198 - Psyr_0877 0.14 -0.0 1,000,198 - Psyr_0877 0.14 +3.2 1,000,198 - Psyr_0877 0.14 -1.4 1,000,198 - Psyr_0877 0.14 -0.0 1,000,206 + Psyr_0877 0.15 +0.8 1,000,206 + Psyr_0877 0.15 -0.4 1,000,207 - Psyr_0877 0.15 -0.7 1,000,207 - Psyr_0877 0.15 +1.6 1,000,207 - Psyr_0877 0.15 +0.3 1,000,207 - Psyr_0877 0.15 -0.9 1,000,389 + Psyr_0877 0.43 -0.0 1,000,389 + Psyr_0877 0.43 -2.5 1,000,623 + Psyr_0877 0.79 +3.3 1,000,623 + Psyr_0877 0.79 +3.2 1,000,623 + Psyr_0877 0.79 -3.9 1,000,623 + Psyr_0877 0.79 -2.2 1,000,623 + Psyr_0877 0.79 -3.7 1,000,623 + Psyr_0877 0.79 +1.0 1,000,624 - Psyr_0877 0.79 +4.6 1,000,624 - Psyr_0877 0.79 +2.0 1,000,624 - Psyr_0877 0.79 +0.3 1,000,624 - Psyr_0877 0.79 -2.1 1,000,832 - +3.8 1,000,840 + +1.2 1,000,840 + +2.8 1,000,841 - +1.7 1,000,841 - +1.0 1,000,884 - -1.9 1,000,940 + -3.2 1,000,940 + -2.3 1,000,940 + +2.0 1,000,940 + +2.6 1,000,940 + -2.6 1,000,940 + -2.1 1,000,941 - -1.0 1,000,941 - +4.8 1,000,941 - -1.4 1,000,944 + +1.2 1,000,944 + -4.1 1,000,944 + -2.1 1,000,944 + +1.0 1,000,944 + +0.5 1,000,944 + +4.2 1,000,945 - -0.0 1,000,945 - -2.4 1,001,053 + Psyr_0878 0.19 -2.3 1,001,053 + Psyr_0878 0.19 -0.1 1,001,053 + Psyr_0878 0.19 -0.8 1,001,053 + Psyr_0878 0.19 -1.7 1,001,054 - Psyr_0878 0.19 -0.1 1,001,054 - Psyr_0878 0.19 -0.2 1,001,230 + Psyr_0878 0.33 -0.0 1,001,397 - Psyr_0878 0.46 -1.0 1,001,491 + Psyr_0878 0.54 -1.3 1,001,491 + Psyr_0878 0.54 -0.0 1,001,491 + Psyr_0878 0.54 +1.6 1,001,491 + Psyr_0878 0.54 -0.0 1,001,491 + Psyr_0878 0.54 -1.9 1,001,491 + Psyr_0878 0.54 +2.0 1,001,492 - Psyr_0878 0.54 -0.6 1,001,492 - Psyr_0878 0.54 +3.3 1,001,515 + Psyr_0878 0.56 +0.3 1,001,515 + Psyr_0878 0.56 +1.6 1,001,515 + Psyr_0878 0.56 -1.2 1,001,515 + Psyr_0878 0.56 -3.1 1,001,516 - Psyr_0878 0.56 -0.7 1,001,606 - Psyr_0878 0.63 -1.1 1,001,645 - Psyr_0878 0.66 +0.3 1,001,647 + Psyr_0878 0.66 -1.5 1,001,647 + Psyr_0878 0.66 +2.3 1,001,647 + Psyr_0878 0.66 -1.7 1,001,648 - Psyr_0878 0.67 -1.8
Or see this region's nucleotide sequence