Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0870 and Psyr_0871 are separated by 303 nucleotides Psyr_0871 and Psyr_0872 are separated by 88 nucleotides
Psyr_0870: Psyr_0870 - GGDEF domain protein, at 991,373 to 992,566
_0870
Psyr_0871: Psyr_0871 - PAS, at 992,870 to 994,183
_0871
Psyr_0872: Psyr_0872 - Alkaline phosphatase, at 994,272 to 995,843
_0872
Position (kb) 992
993
994
995 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 991.917 kb on + strand, within Psyr_0870 at 991.917 kb on + strand, within Psyr_0870 at 991.917 kb on + strand, within Psyr_0870 at 991.918 kb on - strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.948 kb on - strand, within Psyr_0870 at 991.948 kb on - strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.118 kb on + strand, within Psyr_0870 at 992.119 kb on - strand, within Psyr_0870 at 992.148 kb on + strand, within Psyr_0870 at 992.211 kb on - strand, within Psyr_0870 at 992.211 kb on - strand, within Psyr_0870 at 992.325 kb on + strand, within Psyr_0870 at 992.325 kb on + strand, within Psyr_0870 at 992.325 kb on + strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.345 kb on + strand, within Psyr_0870 at 992.345 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.377 kb on - strand, within Psyr_0870 at 992.377 kb on - strand, within Psyr_0870 at 992.377 kb on - strand, within Psyr_0870 at 992.446 kb on - strand, within Psyr_0870 at 992.582 kb on + strand at 992.583 kb on - strand at 992.583 kb on - strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.634 kb on - strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.782 kb on - strand at 992.824 kb on + strand at 992.838 kb on + strand at 992.838 kb on + strand at 992.839 kb on - strand at 992.839 kb on - strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.898 kb on + strand at 992.899 kb on - strand at 992.899 kb on - strand at 992.919 kb on + strand at 992.919 kb on + strand at 992.920 kb on - strand at 992.920 kb on - strand at 992.920 kb on - strand at 992.927 kb on + strand at 992.928 kb on - strand at 992.988 kb on - strand at 992.988 kb on - strand at 993.022 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.251 kb on + strand, within Psyr_0871 at 993.305 kb on - strand, within Psyr_0871 at 993.422 kb on - strand, within Psyr_0871 at 993.530 kb on - strand, within Psyr_0871 at 993.535 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.569 kb on + strand, within Psyr_0871 at 993.570 kb on - strand, within Psyr_0871 at 993.570 kb on - strand, within Psyr_0871 at 993.570 kb on - strand, within Psyr_0871 at 993.570 kb on - strand, within Psyr_0871 at 993.570 kb on - strand, within Psyr_0871 at 993.570 kb on - strand, within Psyr_0871 at 993.570 kb on - strand, within Psyr_0871 at 993.570 kb on - strand, within Psyr_0871 at 993.570 kb on - strand, within Psyr_0871 at 993.570 kb on - strand, within Psyr_0871 at 993.602 kb on + strand, within Psyr_0871 at 993.602 kb on + strand, within Psyr_0871 at 993.602 kb on + strand, within Psyr_0871 at 993.602 kb on + strand, within Psyr_0871 at 993.603 kb on - strand, within Psyr_0871 at 993.603 kb on - strand, within Psyr_0871 at 993.603 kb on - strand, within Psyr_0871 at 993.603 kb on - strand, within Psyr_0871 at 993.603 kb on - strand, within Psyr_0871 at 993.603 kb on - strand, within Psyr_0871 at 993.603 kb on - strand, within Psyr_0871 at 994.241 kb on - strand at 994.667 kb on - strand, within Psyr_0872 at 994.667 kb on - strand, within Psyr_0872 at 994.667 kb on - strand, within Psyr_0872 at 994.667 kb on - strand, within Psyr_0872 at 994.667 kb on - strand, within Psyr_0872 at 994.667 kb on - strand, within Psyr_0872 at 994.975 kb on + strand, within Psyr_0872 at 994.975 kb on + strand, within Psyr_0872 at 994.976 kb on - strand, within Psyr_0872 at 994.979 kb on + strand, within Psyr_0872 at 994.979 kb on + strand, within Psyr_0872 at 994.980 kb on - strand, within Psyr_0872 at 995.033 kb on - strand, within Psyr_0872 at 995.033 kb on - strand at 995.033 kb on - strand, within Psyr_0872 at 995.113 kb on + strand, within Psyr_0872 at 995.114 kb on - strand, within Psyr_0872
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 991,917 + Psyr_0870 0.46 -1.8 991,917 + Psyr_0870 0.46 -0.9 991,917 + Psyr_0870 0.46 +1.0 991,918 - Psyr_0870 0.46 +1.4 991,947 + Psyr_0870 0.48 -0.6 991,947 + Psyr_0870 0.48 -0.5 991,947 + Psyr_0870 0.48 +1.1 991,947 + Psyr_0870 0.48 -3.7 991,948 - Psyr_0870 0.48 +1.6 991,948 - Psyr_0870 0.48 -0.7 992,034 + Psyr_0870 0.55 -2.5 992,034 + Psyr_0870 0.55 -0.2 992,034 + Psyr_0870 0.55 +4.0 992,034 + Psyr_0870 0.55 -2.7 992,034 + Psyr_0870 0.55 +0.1 992,034 + Psyr_0870 0.55 -0.5 992,034 + Psyr_0870 0.55 -0.2 992,034 + Psyr_0870 0.55 +1.0 992,034 + Psyr_0870 0.55 +0.1 992,034 + Psyr_0870 0.55 -0.6 992,034 + Psyr_0870 0.55 +2.1 992,034 + Psyr_0870 0.55 +3.2 992,034 + Psyr_0870 0.55 +1.0 992,034 + Psyr_0870 0.55 -1.0 992,034 + Psyr_0870 0.55 -3.2 992,034 + Psyr_0870 0.55 +2.0 992,034 + Psyr_0870 0.55 +0.0 992,034 + Psyr_0870 0.55 -1.2 992,035 - Psyr_0870 0.55 +3.7 992,035 - Psyr_0870 0.55 +2.0 992,035 - Psyr_0870 0.55 -1.5 992,035 - Psyr_0870 0.55 +2.3 992,035 - Psyr_0870 0.55 -1.5 992,035 - Psyr_0870 0.55 -0.6 992,035 - Psyr_0870 0.55 +2.0 992,035 - Psyr_0870 0.55 -3.5 992,035 - Psyr_0870 0.55 -2.3 992,035 - Psyr_0870 0.55 +1.0 992,035 - Psyr_0870 0.55 +1.6 992,035 - Psyr_0870 0.55 -1.1 992,035 - Psyr_0870 0.55 -1.9 992,035 - Psyr_0870 0.55 +2.9 992,035 - Psyr_0870 0.55 +1.6 992,066 + Psyr_0870 0.58 -0.7 992,066 + Psyr_0870 0.58 +1.7 992,066 + Psyr_0870 0.58 +1.6 992,066 + Psyr_0870 0.58 -2.0 992,066 + Psyr_0870 0.58 +0.0 992,067 - Psyr_0870 0.58 -1.4 992,067 - Psyr_0870 0.58 +3.6 992,067 - Psyr_0870 0.58 +0.5 992,067 - Psyr_0870 0.58 +1.6 992,067 - Psyr_0870 0.58 -1.2 992,118 + Psyr_0870 0.62 -1.9 992,119 - Psyr_0870 0.62 -0.9 992,148 + Psyr_0870 0.65 -0.6 992,211 - Psyr_0870 0.70 +1.3 992,211 - Psyr_0870 0.70 +1.0 992,325 + Psyr_0870 0.80 -0.6 992,325 + Psyr_0870 0.80 +2.3 992,325 + Psyr_0870 0.80 -0.7 992,326 - Psyr_0870 0.80 -0.0 992,326 - Psyr_0870 0.80 -1.6 992,326 - Psyr_0870 0.80 +3.7 992,326 - Psyr_0870 0.80 -1.0 992,345 + Psyr_0870 0.81 -0.1 992,345 + Psyr_0870 0.81 -0.3 992,376 + Psyr_0870 0.84 -3.4 992,376 + Psyr_0870 0.84 -2.8 992,376 + Psyr_0870 0.84 -4.0 992,376 + Psyr_0870 0.84 -1.7 992,376 + Psyr_0870 0.84 -0.3 992,377 - Psyr_0870 0.84 +2.6 992,377 - Psyr_0870 0.84 -0.2 992,377 - Psyr_0870 0.84 -1.1 992,446 - Psyr_0870 0.90 -1.0 992,582 + -0.5 992,583 - +2.6 992,583 - +0.5 992,597 + -2.1 992,597 + +0.8 992,597 + +4.3 992,597 + -1.4 992,597 + +3.5 992,597 + -1.5 992,598 - -2.3 992,598 - +3.2 992,598 - -2.0 992,598 - -1.3 992,598 - +0.3 992,598 - -3.5 992,598 - +3.9 992,598 - -1.2 992,634 - -1.4 992,781 + -1.6 992,781 + -1.2 992,781 + -0.8 992,781 + +3.3 992,781 + +0.7 992,782 - -1.3 992,824 + +3.9 992,838 + +1.0 992,838 + +0.0 992,839 - +2.7 992,839 - -0.2 992,840 + -2.4 992,840 + +3.5 992,840 + +0.3 992,840 + -0.7 992,840 + +0.4 992,840 + +2.8 992,840 + +0.0 992,840 + +1.2 992,840 + -0.4 992,840 + +2.6 992,840 + -1.0 992,841 - +3.5 992,841 - -0.5 992,841 - +2.0 992,841 - +1.3 992,841 - -3.2 992,841 - -2.2 992,841 - +0.2 992,842 + +3.2 992,842 + -0.1 992,842 + -2.0 992,842 + +0.0 992,842 + -1.8 992,842 + +2.6 992,842 + -1.5 992,842 + +0.1 992,842 + +0.0 992,842 + -0.4 992,842 + +2.0 992,843 - -1.0 992,843 - +2.0 992,843 - -1.6 992,843 - -3.3 992,843 - +2.8 992,843 - +3.6 992,843 - -2.4 992,843 - +0.0 992,843 - -1.5 992,843 - +1.2 992,843 - +1.0 992,843 - +3.7 992,846 + -2.5 992,846 + +3.3 992,846 + +2.3 992,846 + +0.0 992,846 + +3.6 992,846 + +2.3 992,846 + +2.3 992,846 + -1.2 992,846 + -3.2 992,846 + +0.9 992,846 + +3.5 992,846 + +1.6 992,846 + +2.0 992,846 + +0.9 992,846 + +1.6 992,846 + -0.2 992,846 + +1.3 992,847 - +0.9 992,847 - +0.3 992,847 - +2.9 992,847 - -0.9 992,847 - +3.6 992,847 - -2.1 992,847 - -0.8 992,898 + +1.8 992,899 - +4.6 992,899 - +1.2 992,919 + -1.5 992,919 + -0.5 992,920 - -1.9 992,920 - -1.5 992,920 - +2.8 992,927 + +3.7 992,928 - -0.6 992,988 - -1.5 992,988 - -0.5 993,022 + Psyr_0871 0.12 -0.8 993,083 + Psyr_0871 0.16 +0.5 993,083 + Psyr_0871 0.16 +3.7 993,083 + Psyr_0871 0.16 -0.5 993,083 + Psyr_0871 0.16 +3.0 993,083 + Psyr_0871 0.16 +2.0 993,083 + Psyr_0871 0.16 -1.2 993,083 + Psyr_0871 0.16 +3.2 993,083 + Psyr_0871 0.16 +1.1 993,083 + Psyr_0871 0.16 +1.6 993,084 - Psyr_0871 0.16 -3.2 993,084 - Psyr_0871 0.16 -2.0 993,084 - Psyr_0871 0.16 +2.6 993,084 - Psyr_0871 0.16 +3.0 993,084 - Psyr_0871 0.16 +1.0 993,084 - Psyr_0871 0.16 +0.0 993,084 - Psyr_0871 0.16 +1.6 993,084 - Psyr_0871 0.16 +3.5 993,251 + Psyr_0871 0.29 +1.2 993,305 - Psyr_0871 0.33 -2.9 993,422 - Psyr_0871 0.42 -1.8 993,530 - Psyr_0871 0.50 -1.4 993,535 + Psyr_0871 0.51 -1.0 993,569 + Psyr_0871 0.53 -2.0 993,569 + Psyr_0871 0.53 +3.5 993,569 + Psyr_0871 0.53 -0.1 993,569 + Psyr_0871 0.53 +1.6 993,569 + Psyr_0871 0.53 -2.7 993,569 + Psyr_0871 0.53 -1.3 993,569 + Psyr_0871 0.53 +0.0 993,569 + Psyr_0871 0.53 +0.6 993,569 + Psyr_0871 0.53 +1.0 993,569 + Psyr_0871 0.53 -5.4 993,569 + Psyr_0871 0.53 +3.0 993,569 + Psyr_0871 0.53 +1.1 993,569 + Psyr_0871 0.53 +1.9 993,570 - Psyr_0871 0.53 -1.2 993,570 - Psyr_0871 0.53 -1.3 993,570 - Psyr_0871 0.53 +0.0 993,570 - Psyr_0871 0.53 +1.6 993,570 - Psyr_0871 0.53 +0.7 993,570 - Psyr_0871 0.53 +1.6 993,570 - Psyr_0871 0.53 -1.9 993,570 - Psyr_0871 0.53 -0.8 993,570 - Psyr_0871 0.53 -1.8 993,570 - Psyr_0871 0.53 +2.3 993,602 + Psyr_0871 0.56 +3.0 993,602 + Psyr_0871 0.56 -0.6 993,602 + Psyr_0871 0.56 +1.6 993,602 + Psyr_0871 0.56 -1.2 993,603 - Psyr_0871 0.56 +3.0 993,603 - Psyr_0871 0.56 -0.8 993,603 - Psyr_0871 0.56 +3.0 993,603 - Psyr_0871 0.56 -1.3 993,603 - Psyr_0871 0.56 -0.7 993,603 - Psyr_0871 0.56 -2.0 993,603 - Psyr_0871 0.56 +0.0 994,241 - -1.4 994,667 - Psyr_0872 0.25 -1.6 994,667 - Psyr_0872 0.25 -0.9 994,667 - Psyr_0872 0.25 +1.1 994,667 - Psyr_0872 0.25 +3.5 994,667 - Psyr_0872 0.25 -2.6 994,667 - Psyr_0872 0.25 -0.8 994,975 + Psyr_0872 0.45 -1.4 994,975 + Psyr_0872 0.45 +0.0 994,976 - Psyr_0872 0.45 -1.2 994,979 + Psyr_0872 0.45 -1.5 994,979 + Psyr_0872 0.45 -2.2 994,980 - Psyr_0872 0.45 +4.1 995,033 - Psyr_0872 0.48 -1.0 995,033 - +1.6 995,033 - Psyr_0872 0.48 -4.1 995,113 + Psyr_0872 0.53 -2.2 995,114 - Psyr_0872 0.54 +1.6
Or see this region's nucleotide sequence