Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0863

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0862 and Psyr_0863 are separated by 227 nucleotidesPsyr_0863 and Psyr_0864 are separated by 108 nucleotidesPsyr_0864 and Psyr_0865 are separated by 267 nucleotides Psyr_0862: Psyr_0862 - Acyltransferase 3, at 981,424 to 983,445 _0862 Psyr_0863: Psyr_0863 - PhnA protein, at 983,673 to 984,047 _0863 Psyr_0864: Psyr_0864 - Protein of unknown function DUF393, at 984,156 to 984,587 _0864 Psyr_0865: Psyr_0865 - General substrate transporter:Major facilitator superfamily, at 984,855 to 986,063 _0865 Position (kb) 983 984 985Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 982.756 kb on + strand, within Psyr_0862at 982.757 kb on - strand, within Psyr_0862at 982.757 kb on - strand, within Psyr_0862at 982.800 kb on - strand, within Psyr_0862at 982.800 kb on - strand, within Psyr_0862at 982.800 kb on - strand, within Psyr_0862at 982.800 kb on - strand, within Psyr_0862at 982.800 kb on - strand, within Psyr_0862at 982.800 kb on - strand, within Psyr_0862at 982.800 kb on - strand, within Psyr_0862at 982.853 kb on + strand, within Psyr_0862at 982.853 kb on + strand, within Psyr_0862at 982.853 kb on + strand, within Psyr_0862at 982.854 kb on - strand, within Psyr_0862at 982.854 kb on - strand, within Psyr_0862at 982.854 kb on - strand, within Psyr_0862at 982.991 kb on + strand, within Psyr_0862at 982.991 kb on + strand, within Psyr_0862at 982.991 kb on + strand, within Psyr_0862at 982.991 kb on + strand, within Psyr_0862at 982.991 kb on + strand, within Psyr_0862at 982.991 kb on + strand, within Psyr_0862at 982.991 kb on + strand, within Psyr_0862at 982.992 kb on - strand, within Psyr_0862at 982.992 kb on - strand, within Psyr_0862at 982.992 kb on - strand, within Psyr_0862at 982.992 kb on - strand, within Psyr_0862at 982.992 kb on - strand, within Psyr_0862at 982.992 kb on - strand, within Psyr_0862at 982.992 kb on - strand, within Psyr_0862at 982.994 kb on + strand, within Psyr_0862at 982.994 kb on + strand, within Psyr_0862at 982.994 kb on + strand, within Psyr_0862at 982.995 kb on - strand, within Psyr_0862at 982.995 kb on - strand, within Psyr_0862at 982.995 kb on - strand, within Psyr_0862at 982.995 kb on - strand, within Psyr_0862at 982.995 kb on - strand, within Psyr_0862at 982.995 kb on - strand, within Psyr_0862at 982.995 kb on - strand, within Psyr_0862at 983.022 kb on + strand, within Psyr_0862at 983.023 kb on - strand, within Psyr_0862at 983.023 kb on - strand, within Psyr_0862at 983.061 kb on - strand, within Psyr_0862at 983.061 kb on - strand, within Psyr_0862at 983.129 kb on + strand, within Psyr_0862at 983.129 kb on + strand, within Psyr_0862at 983.130 kb on - strand, within Psyr_0862at 983.130 kb on - strand, within Psyr_0862at 983.228 kb on + strand, within Psyr_0862at 983.257 kb on + strandat 983.257 kb on + strandat 983.257 kb on + strandat 983.257 kb on + strandat 983.257 kb on + strandat 983.257 kb on + strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.464 kb on - strandat 983.464 kb on - strandat 983.464 kb on - strandat 983.464 kb on - strandat 983.480 kb on + strandat 983.480 kb on + strandat 983.496 kb on + strandat 983.496 kb on + strandat 983.496 kb on + strandat 983.496 kb on + strandat 983.496 kb on + strandat 983.496 kb on + strandat 983.496 kb on + strandat 983.496 kb on + strandat 983.496 kb on + strandat 983.496 kb on + strandat 983.496 kb on + strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.501 kb on - strandat 983.529 kb on + strandat 983.530 kb on - strandat 983.578 kb on - strandat 983.618 kb on + strandat 983.619 kb on - strandat 983.619 kb on - strandat 983.619 kb on - strandat 983.665 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.668 kb on - strandat 983.668 kb on - strandat 983.668 kb on - strandat 983.668 kb on - strandat 983.668 kb on - strandat 983.668 kb on - strandat 983.668 kb on - strandat 983.743 kb on - strand, within Psyr_0863at 983.743 kb on - strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 984.353 kb on + strand, within Psyr_0864at 984.354 kb on - strand, within Psyr_0864at 984.354 kb on - strand, within Psyr_0864at 984.489 kb on + strand, within Psyr_0864at 984.490 kb on - strand, within Psyr_0864at 984.531 kb on + strand, within Psyr_0864at 984.531 kb on + strand, within Psyr_0864at 984.605 kb on + strandat 984.605 kb on + strandat 984.606 kb on - strandat 984.652 kb on + strandat 984.692 kb on + strandat 984.693 kb on - strandat 984.781 kb on + strandat 984.781 kb on + strandat 984.782 kb on - strandat 984.782 kb on - strandat 984.860 kb on - strandat 984.887 kb on + strandat 984.888 kb on - strandat 984.888 kb on - strandat 984.968 kb on + strandat 984.968 kb on + strandat 984.968 kb on + strandat 984.969 kb on - strandat 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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982,756 + Psyr_0862 0.66 +2.8
982,757 - Psyr_0862 0.66 -0.8
982,757 - Psyr_0862 0.66 -0.1
982,800 - Psyr_0862 0.68 -0.1
982,800 - Psyr_0862 0.68 -0.5
982,800 - Psyr_0862 0.68 -0.6
982,800 - Psyr_0862 0.68 +1.8
982,800 - Psyr_0862 0.68 +2.0
982,800 - Psyr_0862 0.68 -2.0
982,800 - Psyr_0862 0.68 +1.0
982,853 + Psyr_0862 0.71 -1.0
982,853 + Psyr_0862 0.71 -1.1
982,853 + Psyr_0862 0.71 -0.0
982,854 - Psyr_0862 0.71 -0.0
982,854 - Psyr_0862 0.71 +3.7
982,854 - Psyr_0862 0.71 -0.0
982,991 + Psyr_0862 0.77 +3.7
982,991 + Psyr_0862 0.77 +4.5
982,991 + Psyr_0862 0.77 -0.8
982,991 + Psyr_0862 0.77 +2.8
982,991 + Psyr_0862 0.77 -2.0
982,991 + Psyr_0862 0.77 -0.0
982,991 + Psyr_0862 0.77 -1.7
982,992 - Psyr_0862 0.78 +0.1
982,992 - Psyr_0862 0.78 +1.6
982,992 - Psyr_0862 0.78 -0.0
982,992 - Psyr_0862 0.78 +2.0
982,992 - Psyr_0862 0.78 -2.6
982,992 - Psyr_0862 0.78 -0.4
982,992 - Psyr_0862 0.78 -2.1
982,994 + Psyr_0862 0.78 -0.7
982,994 + Psyr_0862 0.78 -0.0
982,994 + Psyr_0862 0.78 +1.9
982,995 - Psyr_0862 0.78 -0.4
982,995 - Psyr_0862 0.78 -0.7
982,995 - Psyr_0862 0.78 -2.6
982,995 - Psyr_0862 0.78 -2.3
982,995 - Psyr_0862 0.78 +0.7
982,995 - Psyr_0862 0.78 -1.5
982,995 - Psyr_0862 0.78 +3.6
983,022 + Psyr_0862 0.79 +2.0
983,023 - Psyr_0862 0.79 +3.0
983,023 - Psyr_0862 0.79 +1.0
983,061 - Psyr_0862 0.81 -1.1
983,061 - Psyr_0862 0.81 +1.7
983,129 + Psyr_0862 0.84 +1.6
983,129 + Psyr_0862 0.84 +3.8
983,130 - Psyr_0862 0.84 +3.2
983,130 - Psyr_0862 0.84 +0.1
983,228 + Psyr_0862 0.89 -2.6
983,257 + -2.5
983,257 + -4.5
983,257 + +2.0
983,257 + -0.4
983,257 + -2.6
983,257 + -2.0
983,258 - -0.0
983,258 - +3.3
983,258 - +1.6
983,258 - -0.2
983,463 + -1.4
983,463 + +3.2
983,463 + +3.6
983,463 + -2.6
983,463 + -4.2
983,464 - -2.8
983,464 - +3.0
983,464 - -1.6
983,464 - -3.3
983,480 + -2.3
983,480 + -2.1
983,496 + +3.0
983,496 + +3.3
983,496 + -1.8
983,496 + -1.0
983,496 + -3.0
983,496 + -2.7
983,496 + +1.6
983,496 + +2.8
983,496 + -1.5
983,496 + +2.8
983,496 + +4.0
983,497 - -0.0
983,497 - -0.6
983,497 - +4.6
983,497 - -2.1
983,501 - +3.3
983,529 + +2.0
983,530 - -0.4
983,578 - -3.1
983,618 + -1.4
983,619 - -1.6
983,619 - +1.6
983,619 - -1.1
983,665 + +0.5
983,667 + -0.0
983,667 + -0.0
983,667 + -0.1
983,667 + +2.6
983,667 + +3.3
983,667 + -1.0
983,667 + -0.6
983,667 + -0.1
983,667 + -0.0
983,667 + +3.2
983,667 + +2.0
983,668 - -3.6
983,668 - -3.6
983,668 - -3.6
983,668 - +1.6
983,668 - -3.9
983,668 - -0.2
983,668 - -4.8
983,743 - Psyr_0863 0.19 -2.3
983,743 - Psyr_0863 0.19 -4.4
983,748 + Psyr_0863 0.20 +3.2
983,748 + Psyr_0863 0.20 +2.3
983,749 - Psyr_0863 0.20 -2.3
983,749 - Psyr_0863 0.20 -3.0
983,749 - Psyr_0863 0.20 +1.0
983,749 - Psyr_0863 0.20 -2.8
983,749 - Psyr_0863 0.20 -1.8
983,749 - Psyr_0863 0.20 -3.3
983,749 - Psyr_0863 0.20 +1.6
983,749 - Psyr_0863 0.20 -0.0
983,749 - Psyr_0863 0.20 -0.5
984,353 + Psyr_0864 0.46 -2.9
984,354 - Psyr_0864 0.46 -0.1
984,354 - Psyr_0864 0.46 +1.6
984,489 + Psyr_0864 0.77 -0.8
984,490 - Psyr_0864 0.77 -4.2
984,531 + Psyr_0864 0.87 +0.4
984,531 + Psyr_0864 0.87 -2.6
984,605 + -1.6
984,605 + -0.0
984,606 - +0.4
984,652 + -3.0
984,692 + -0.4
984,693 - +3.0
984,781 + +3.5
984,781 + -0.0
984,782 - +2.0
984,782 - -1.8
984,860 - -2.1
984,887 + +3.2
984,888 - -1.4
984,888 - -2.9
984,968 + +2.3
984,968 + +3.8
984,968 + +0.8
984,969 - -3.3
985,026 + Psyr_0865 0.14 -0.8
985,026 + Psyr_0865 0.14 -3.9
985,026 + Psyr_0865 0.14 +0.1
985,026 + Psyr_0865 0.14 +3.2
985,026 + Psyr_0865 0.14 +4.0
985,026 + Psyr_0865 0.14 -1.0
985,026 + Psyr_0865 0.14 -2.9
985,026 + Psyr_0865 0.14 -1.9
985,026 + Psyr_0865 0.14 -2.4
985,027 - Psyr_0865 0.14 -2.6
985,027 - Psyr_0865 0.14 -1.1
985,027 - Psyr_0865 0.14 -0.9
985,027 - Psyr_0865 0.14 -1.6
985,027 - Psyr_0865 0.14 -2.2
985,027 - Psyr_0865 0.14 -1.4
985,027 - Psyr_0865 0.14 +0.0
985,027 - Psyr_0865 0.14 -1.0
985,027 - Psyr_0865 0.14 -0.7
985,027 - Psyr_0865 0.14 -0.8
985,027 - Psyr_0865 0.14 +3.2
985,027 - Psyr_0865 0.14 -3.2
985,027 - Psyr_0865 0.14 +2.0
985,027 - Psyr_0865 0.14 -1.6
985,027 - Psyr_0865 0.14 +0.0
985,027 - Psyr_0865 0.14 +2.0
985,027 - Psyr_0865 0.14 +2.8

Or see this region's nucleotide sequence