Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0858 and Psyr_0859 are separated by 131 nucleotides Psyr_0859 and Psyr_0860 are separated by 56 nucleotides Psyr_0860 and Psyr_0861 are separated by 107 nucleotides Psyr_0861 and Psyr_0862 are separated by 65 nucleotides
Psyr_0858: Psyr_0858 - conserved hypothetical protein, at 977,681 to 978,088
_0858
Psyr_0859: Psyr_0859 - Carbonate dehydratase, at 978,220 to 978,858
_0859
Psyr_0860: Psyr_0860 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 978,915 to 980,591
_0860
Psyr_0861: Psyr_0861 - Metal-dependent phosphohydrolase, HD subdomain protein, at 980,699 to 981,358
_0861
Psyr_0862: Psyr_0862 - Acyltransferase 3, at 981,424 to 983,445
_0862
Position (kb) 978
979
980
981 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 977.962 kb on + strand, within Psyr_0858 at 977.962 kb on + strand, within Psyr_0858 at 977.963 kb on - strand, within Psyr_0858 at 978.230 kb on + strand at 978.230 kb on + strand at 978.231 kb on - strand at 978.272 kb on + strand at 978.273 kb on - strand at 978.479 kb on + strand, within Psyr_0859 at 978.479 kb on + strand, within Psyr_0859 at 978.479 kb on + strand, within Psyr_0859 at 978.479 kb on + strand, within Psyr_0859 at 978.480 kb on - strand, within Psyr_0859 at 978.480 kb on - strand, within Psyr_0859 at 978.480 kb on - strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.601 kb on + strand, within Psyr_0859 at 978.763 kb on + strand, within Psyr_0859 at 978.763 kb on + strand, within Psyr_0859 at 978.763 kb on + strand, within Psyr_0859 at 978.764 kb on - strand, within Psyr_0859 at 978.764 kb on - strand, within Psyr_0859 at 978.764 kb on - strand, within Psyr_0859 at 978.764 kb on - strand, within Psyr_0859 at 978.836 kb on - strand at 978.867 kb on + strand at 979.032 kb on - strand at 979.032 kb on - strand at 979.577 kb on + strand, within Psyr_0860 at 979.741 kb on + strand, within Psyr_0860 at 979.741 kb on + strand, within Psyr_0860 at 979.741 kb on + strand, within Psyr_0860 at 979.741 kb on + strand, within Psyr_0860 at 979.742 kb on - strand, within Psyr_0860 at 979.757 kb on + strand, within Psyr_0860 at 979.758 kb on - strand, within Psyr_0860 at 979.758 kb on - strand, within Psyr_0860 at 979.797 kb on + strand, within Psyr_0860 at 979.798 kb on - strand, within Psyr_0860 at 979.875 kb on + strand, within Psyr_0860 at 979.875 kb on + strand, within Psyr_0860 at 979.876 kb on - strand, within Psyr_0860 at 979.876 kb on - strand, within Psyr_0860 at 979.987 kb on + strand, within Psyr_0860 at 979.987 kb on + strand, within Psyr_0860 at 979.988 kb on - strand, within Psyr_0860 at 979.988 kb on - strand, within Psyr_0860 at 979.988 kb on - strand, within Psyr_0860 at 979.988 kb on - strand, within Psyr_0860 at 979.988 kb on - strand, within Psyr_0860 at 980.008 kb on - strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.176 kb on + strand, within Psyr_0860 at 980.177 kb on - strand, within Psyr_0860 at 980.177 kb on - strand, within Psyr_0860 at 980.177 kb on - strand, within Psyr_0860 at 980.177 kb on - strand, within Psyr_0860 at 980.236 kb on + strand, within Psyr_0860 at 980.237 kb on - strand, within Psyr_0860 at 980.237 kb on - strand, within Psyr_0860 at 980.461 kb on - strand at 980.490 kb on + strand at 980.490 kb on + strand at 980.492 kb on + strand at 980.492 kb on + strand at 980.493 kb on - strand at 980.566 kb on - strand at 980.566 kb on - strand at 980.605 kb on + strand at 980.605 kb on + strand at 980.607 kb on + strand at 980.607 kb on + strand at 980.608 kb on - strand at 980.608 kb on - strand at 980.637 kb on + strand at 980.863 kb on - strand, within Psyr_0861 at 980.889 kb on + strand, within Psyr_0861 at 980.889 kb on + strand, within Psyr_0861 at 980.898 kb on + strand, within Psyr_0861 at 980.899 kb on - strand, within Psyr_0861 at 980.924 kb on + strand, within Psyr_0861 at 980.925 kb on - strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.987 kb on + strand, within Psyr_0861 at 980.988 kb on - strand, within Psyr_0861 at 980.988 kb on - strand, within Psyr_0861 at 981.095 kb on + strand, within Psyr_0861 at 981.096 kb on - strand, within Psyr_0861 at 981.096 kb on - strand, within Psyr_0861 at 981.096 kb on - strand, within Psyr_0861 at 981.396 kb on - strand at 981.396 kb on - strand at 981.415 kb on - strand at 981.439 kb on - strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.503 kb on + strand at 981.504 kb on - strand at 981.504 kb on - strand at 981.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 977,962 + Psyr_0858 0.69 +0.8 977,962 + Psyr_0858 0.69 -1.2 977,963 - Psyr_0858 0.69 -1.6 978,230 + +3.5 978,230 + +2.0 978,231 - -0.1 978,272 + -0.2 978,273 - -2.5 978,479 + Psyr_0859 0.41 +1.0 978,479 + Psyr_0859 0.41 -1.8 978,479 + Psyr_0859 0.41 +0.0 978,479 + Psyr_0859 0.41 +3.5 978,480 - Psyr_0859 0.41 +2.6 978,480 - Psyr_0859 0.41 -0.7 978,480 - Psyr_0859 0.41 +2.6 978,598 + Psyr_0859 0.59 +0.6 978,598 + Psyr_0859 0.59 -0.9 978,598 + Psyr_0859 0.59 +2.0 978,598 + Psyr_0859 0.59 -1.0 978,598 + Psyr_0859 0.59 -2.3 978,599 - Psyr_0859 0.59 -3.5 978,599 - Psyr_0859 0.59 -0.8 978,599 - Psyr_0859 0.59 -3.6 978,599 - Psyr_0859 0.59 -2.1 978,601 + Psyr_0859 0.60 +0.2 978,763 + Psyr_0859 0.85 -1.2 978,763 + Psyr_0859 0.85 -1.1 978,763 + Psyr_0859 0.85 -0.4 978,764 - Psyr_0859 0.85 -1.2 978,764 - Psyr_0859 0.85 +1.4 978,764 - Psyr_0859 0.85 +0.7 978,764 - Psyr_0859 0.85 -1.9 978,836 - -1.6 978,867 + -1.8 979,032 - -2.5 979,032 - +3.8 979,577 + Psyr_0860 0.39 +2.3 979,741 + Psyr_0860 0.49 +0.4 979,741 + Psyr_0860 0.49 +3.2 979,741 + Psyr_0860 0.49 +1.0 979,741 + Psyr_0860 0.49 -0.0 979,742 - Psyr_0860 0.49 -3.0 979,757 + Psyr_0860 0.50 -0.5 979,758 - Psyr_0860 0.50 +0.5 979,758 - Psyr_0860 0.50 -0.5 979,797 + Psyr_0860 0.53 +1.6 979,798 - Psyr_0860 0.53 -2.9 979,875 + Psyr_0860 0.57 -0.0 979,875 + Psyr_0860 0.57 +4.2 979,876 - Psyr_0860 0.57 -0.5 979,876 - Psyr_0860 0.57 +4.0 979,987 + Psyr_0860 0.64 -1.5 979,987 + Psyr_0860 0.64 +1.6 979,988 - Psyr_0860 0.64 +2.0 979,988 - Psyr_0860 0.64 +2.0 979,988 - Psyr_0860 0.64 +2.3 979,988 - Psyr_0860 0.64 -1.9 979,988 - Psyr_0860 0.64 -1.2 980,008 - Psyr_0860 0.65 -0.4 980,176 + Psyr_0860 0.75 +3.7 980,176 + Psyr_0860 0.75 -0.3 980,176 + Psyr_0860 0.75 -1.2 980,176 + Psyr_0860 0.75 -5.7 980,176 + Psyr_0860 0.75 +0.6 980,176 + Psyr_0860 0.75 -1.2 980,176 + Psyr_0860 0.75 -1.0 980,176 + Psyr_0860 0.75 +2.6 980,176 + Psyr_0860 0.75 +3.9 980,176 + Psyr_0860 0.75 -0.0 980,176 + Psyr_0860 0.75 -2.4 980,177 - Psyr_0860 0.75 -1.7 980,177 - Psyr_0860 0.75 +4.2 980,177 - Psyr_0860 0.75 -1.7 980,177 - Psyr_0860 0.75 +4.1 980,236 + Psyr_0860 0.79 +2.6 980,237 - Psyr_0860 0.79 +3.2 980,237 - Psyr_0860 0.79 +1.0 980,461 - -1.3 980,490 + -4.1 980,490 + -0.3 980,492 + -1.0 980,492 + -0.0 980,493 - +1.0 980,566 - -3.8 980,566 - -0.8 980,605 + -5.1 980,605 + -1.3 980,607 + -3.2 980,607 + -2.3 980,608 - +2.3 980,608 - +0.8 980,637 + -1.8 980,863 - Psyr_0861 0.25 -2.0 980,889 + Psyr_0861 0.29 -1.2 980,889 + Psyr_0861 0.29 +3.6 980,898 + Psyr_0861 0.30 -2.3 980,899 - Psyr_0861 0.30 -1.6 980,924 + Psyr_0861 0.34 -0.3 980,925 - Psyr_0861 0.34 -1.8 980,928 + Psyr_0861 0.35 +0.8 980,928 + Psyr_0861 0.35 +0.3 980,928 + Psyr_0861 0.35 -0.2 980,928 + Psyr_0861 0.35 +0.4 980,928 + Psyr_0861 0.35 +2.3 980,929 - Psyr_0861 0.35 -1.1 980,929 - Psyr_0861 0.35 +2.3 980,929 - Psyr_0861 0.35 +2.0 980,929 - Psyr_0861 0.35 -3.8 980,929 - Psyr_0861 0.35 +1.0 980,929 - Psyr_0861 0.35 -1.4 980,929 - Psyr_0861 0.35 -5.1 980,929 - Psyr_0861 0.35 +1.4 980,987 + Psyr_0861 0.44 -1.8 980,988 - Psyr_0861 0.44 +3.2 980,988 - Psyr_0861 0.44 -1.5 981,095 + Psyr_0861 0.60 -1.3 981,096 - Psyr_0861 0.60 -1.1 981,096 - Psyr_0861 0.60 -0.1 981,096 - Psyr_0861 0.60 -2.6 981,396 - +4.0 981,396 - -1.1 981,415 - -0.0 981,439 - +0.2 981,500 + -1.8 981,500 + -0.0 981,500 + +3.5 981,501 - +3.3 981,501 - -3.4 981,501 - -2.3 981,501 - -0.0 981,503 + -2.4 981,504 - -1.1 981,504 - -0.1 981,504 - +2.6
Or see this region's nucleotide sequence