Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_RNA16 and Psyr_RNA17 are separated by 149 nucleotides Psyr_RNA17 and Psyr_0852 are separated by 124 nucleotides Psyr_0852 and Psyr_0853 are separated by 172 nucleotides
Psyr_RNA16: Psyr_RNA16 - 23S ribosomal RNA, at 966,773 to 969,675
_RNA16
Psyr_RNA17: Psyr_RNA17 - 5S ribosomal RNA, at 969,825 to 969,939
_RNA17
Psyr_0852: Psyr_0852 - pectate lyase, at 970,064 to 971,311
_0852
Psyr_0853: Psyr_0853 - conserved hypothetical protein, at 971,484 to 974,303
_0853
Position (kb) 970
971
972 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 970.065 kb on + strand at 970.252 kb on + strand, within Psyr_0852 at 970.273 kb on - strand, within Psyr_0852 at 970.341 kb on + strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.342 kb on - strand, within Psyr_0852 at 970.393 kb on + strand, within Psyr_0852 at 970.394 kb on - strand, within Psyr_0852 at 970.407 kb on + strand, within Psyr_0852 at 970.407 kb on + strand, within Psyr_0852 at 970.408 kb on - strand, within Psyr_0852 at 970.408 kb on - strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.423 kb on + strand, within Psyr_0852 at 970.424 kb on - strand, within Psyr_0852 at 970.424 kb on - strand, within Psyr_0852 at 970.424 kb on - strand, within Psyr_0852 at 970.424 kb on - strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.476 kb on + strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.477 kb on - strand, within Psyr_0852 at 970.551 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.655 kb on + strand, within Psyr_0852 at 970.656 kb on - strand, within Psyr_0852 at 970.656 kb on - strand, within Psyr_0852 at 970.656 kb on - strand, within Psyr_0852 at 970.656 kb on - strand, within Psyr_0852 at 970.728 kb on + strand, within Psyr_0852 at 970.729 kb on - strand, within Psyr_0852 at 970.729 kb on - strand, within Psyr_0852 at 970.729 kb on - strand, within Psyr_0852 at 970.737 kb on + strand, within Psyr_0852 at 970.737 kb on + strand, within Psyr_0852 at 970.737 kb on + strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.738 kb on - strand, within Psyr_0852 at 970.757 kb on - strand, within Psyr_0852 at 970.771 kb on + strand, within Psyr_0852 at 970.771 kb on + strand, within Psyr_0852 at 970.772 kb on - strand, within Psyr_0852 at 970.772 kb on - strand, within Psyr_0852 at 970.837 kb on + strand, within Psyr_0852 at 970.838 kb on - strand, within Psyr_0852 at 970.838 kb on - strand, within Psyr_0852 at 970.838 kb on - strand, within Psyr_0852 at 970.838 kb on - strand, within Psyr_0852 at 970.934 kb on + strand, within Psyr_0852 at 970.935 kb on - strand, within Psyr_0852 at 970.942 kb on + strand, within Psyr_0852 at 970.942 kb on + strand, within Psyr_0852 at 970.943 kb on - strand, within Psyr_0852 at 971.033 kb on + strand, within Psyr_0852 at 971.034 kb on - strand, within Psyr_0852 at 971.034 kb on - strand, within Psyr_0852 at 971.034 kb on - strand, within Psyr_0852 at 971.034 kb on - strand, within Psyr_0852 at 971.035 kb on + strand, within Psyr_0852 at 971.035 kb on + strand, within Psyr_0852 at 971.035 kb on + strand, within Psyr_0852 at 971.035 kb on + strand, within Psyr_0852 at 971.035 kb on + strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.036 kb on - strand, within Psyr_0852 at 971.090 kb on - strand, within Psyr_0852 at 971.090 kb on - strand, within Psyr_0852 at 971.090 kb on - strand, within Psyr_0852 at 971.121 kb on + strand, within Psyr_0852 at 971.121 kb on + strand, within Psyr_0852 at 971.122 kb on - strand, within Psyr_0852 at 971.122 kb on - strand, within Psyr_0852 at 971.127 kb on + strand, within Psyr_0852 at 971.128 kb on - strand, within Psyr_0852 at 971.145 kb on + strand, within Psyr_0852 at 971.145 kb on + strand, within Psyr_0852 at 971.145 kb on + strand, within Psyr_0852 at 971.145 kb on + strand, within Psyr_0852 at 971.212 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.247 kb on + strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.248 kb on - strand at 971.250 kb on + strand at 971.250 kb on + strand at 971.251 kb on - strand at 971.251 kb on - strand at 971.300 kb on + strand at 971.301 kb on - strand at 971.337 kb on + strand at 971.337 kb on + strand at 971.337 kb on + strand at 971.337 kb on + strand at 971.338 kb on - strand at 971.338 kb on - strand at 971.343 kb on + strand at 971.343 kb on + strand at 971.344 kb on - strand at 971.344 kb on - strand at 971.344 kb on - strand at 971.353 kb on + strand at 971.353 kb on + strand at 971.353 kb on + strand at 971.382 kb on - strand at 971.436 kb on - strand at 971.469 kb on + strand at 971.470 kb on - strand at 971.485 kb on + strand at 971.486 kb on - strand at 971.536 kb on + strand at 971.536 kb on + strand at 971.537 kb on - strand at 971.560 kb on + strand at 971.560 kb on + strand at 971.560 kb on + strand at 971.560 kb on + strand at 971.560 kb on + strand at 971.560 kb on + strand at 971.561 kb on - strand at 971.561 kb on - strand at 971.561 kb on - strand at 971.561 kb on - strand at 971.561 kb on - strand at 971.561 kb on - strand at 971.564 kb on + strand at 971.564 kb on + strand at 971.564 kb on + strand at 971.564 kb on + strand at 971.564 kb on + strand at 971.565 kb on - strand at 971.565 kb on - strand at 971.565 kb on - strand at 971.565 kb on - strand at 971.719 kb on + strand at 971.719 kb on + strand at 971.719 kb on + strand at 971.720 kb on - strand at 971.720 kb on - strand at 971.720 kb on - strand at 971.722 kb on + strand at 971.722 kb on + strand at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.776 kb on + strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.777 kb on - strand, within Psyr_0853 at 971.944 kb on + strand, within Psyr_0853 at 971.944 kb on + strand, within Psyr_0853 at 971.944 kb on + strand, within Psyr_0853 at 971.945 kb on - strand, within Psyr_0853 at 972.025 kb on + strand, within Psyr_0853 at 972.172 kb on + strand, within Psyr_0853 at 972.172 kb on + strand, within Psyr_0853 at 972.198 kb on - strand, within Psyr_0853 at 972.268 kb on + strand, within Psyr_0853 at 972.268 kb on + strand, within Psyr_0853 at 972.282 kb on + strand, within Psyr_0853 at 972.283 kb on - strand, within Psyr_0853 at 972.283 kb on - strand, within Psyr_0853
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 970,065 + -1.0 970,252 + Psyr_0852 0.15 +2.0 970,273 - Psyr_0852 0.17 -0.6 970,341 + Psyr_0852 0.22 -2.3 970,342 - Psyr_0852 0.22 -0.1 970,342 - Psyr_0852 0.22 +3.3 970,342 - Psyr_0852 0.22 +2.0 970,342 - Psyr_0852 0.22 -1.9 970,342 - Psyr_0852 0.22 +4.3 970,342 - Psyr_0852 0.22 -2.4 970,342 - Psyr_0852 0.22 +3.5 970,393 + Psyr_0852 0.26 -3.2 970,394 - Psyr_0852 0.26 -0.1 970,407 + Psyr_0852 0.27 +0.0 970,407 + Psyr_0852 0.27 -1.0 970,408 - Psyr_0852 0.28 +0.0 970,408 - Psyr_0852 0.28 -3.2 970,423 + Psyr_0852 0.29 +4.2 970,423 + Psyr_0852 0.29 -2.6 970,423 + Psyr_0852 0.29 +2.8 970,423 + Psyr_0852 0.29 +2.3 970,423 + Psyr_0852 0.29 +0.0 970,423 + Psyr_0852 0.29 -4.1 970,424 - Psyr_0852 0.29 +3.0 970,424 - Psyr_0852 0.29 -1.9 970,424 - Psyr_0852 0.29 +3.6 970,424 - Psyr_0852 0.29 +0.4 970,476 + Psyr_0852 0.33 +1.9 970,476 + Psyr_0852 0.33 -1.4 970,476 + Psyr_0852 0.33 -0.8 970,476 + Psyr_0852 0.33 +2.8 970,476 + Psyr_0852 0.33 +0.0 970,476 + Psyr_0852 0.33 -2.1 970,476 + Psyr_0852 0.33 +2.0 970,476 + Psyr_0852 0.33 -1.7 970,476 + Psyr_0852 0.33 +2.3 970,476 + Psyr_0852 0.33 -2.6 970,476 + Psyr_0852 0.33 +1.6 970,476 + Psyr_0852 0.33 +1.8 970,476 + Psyr_0852 0.33 +1.6 970,476 + Psyr_0852 0.33 -3.4 970,476 + Psyr_0852 0.33 +2.3 970,476 + Psyr_0852 0.33 +0.0 970,476 + Psyr_0852 0.33 +2.6 970,476 + Psyr_0852 0.33 -2.7 970,476 + Psyr_0852 0.33 -1.9 970,477 - Psyr_0852 0.33 -2.9 970,477 - Psyr_0852 0.33 -3.5 970,477 - Psyr_0852 0.33 -1.5 970,477 - Psyr_0852 0.33 +2.6 970,477 - Psyr_0852 0.33 -1.9 970,477 - Psyr_0852 0.33 +0.0 970,477 - Psyr_0852 0.33 +0.3 970,477 - Psyr_0852 0.33 -3.1 970,477 - Psyr_0852 0.33 -1.6 970,477 - Psyr_0852 0.33 -1.6 970,477 - Psyr_0852 0.33 +3.6 970,477 - Psyr_0852 0.33 +0.7 970,477 - Psyr_0852 0.33 +3.0 970,477 - Psyr_0852 0.33 +1.6 970,477 - Psyr_0852 0.33 +1.6 970,477 - Psyr_0852 0.33 -2.9 970,477 - Psyr_0852 0.33 -1.5 970,477 - Psyr_0852 0.33 +2.6 970,477 - Psyr_0852 0.33 -1.7 970,477 - Psyr_0852 0.33 -2.5 970,477 - Psyr_0852 0.33 -0.3 970,477 - Psyr_0852 0.33 -2.7 970,477 - Psyr_0852 0.33 +2.3 970,551 + Psyr_0852 0.39 +1.0 970,655 + Psyr_0852 0.47 +2.8 970,655 + Psyr_0852 0.47 -1.1 970,655 + Psyr_0852 0.47 +0.2 970,655 + Psyr_0852 0.47 +0.0 970,655 + Psyr_0852 0.47 +3.7 970,655 + Psyr_0852 0.47 +0.0 970,655 + Psyr_0852 0.47 +3.6 970,656 - Psyr_0852 0.47 -2.4 970,656 - Psyr_0852 0.47 +1.0 970,656 - Psyr_0852 0.47 +0.0 970,656 - Psyr_0852 0.47 -0.2 970,728 + Psyr_0852 0.53 -4.2 970,729 - Psyr_0852 0.53 -3.9 970,729 - Psyr_0852 0.53 -2.0 970,729 - Psyr_0852 0.53 -3.2 970,737 + Psyr_0852 0.54 +1.0 970,737 + Psyr_0852 0.54 -1.3 970,737 + Psyr_0852 0.54 -0.5 970,738 - Psyr_0852 0.54 +2.0 970,738 - Psyr_0852 0.54 -2.0 970,738 - Psyr_0852 0.54 -1.9 970,738 - Psyr_0852 0.54 -1.6 970,738 - Psyr_0852 0.54 -1.3 970,738 - Psyr_0852 0.54 +1.0 970,738 - Psyr_0852 0.54 +1.0 970,738 - Psyr_0852 0.54 +0.4 970,757 - Psyr_0852 0.56 -2.7 970,771 + Psyr_0852 0.57 +1.0 970,771 + Psyr_0852 0.57 -3.7 970,772 - Psyr_0852 0.57 -2.5 970,772 - Psyr_0852 0.57 -2.0 970,837 + Psyr_0852 0.62 -1.2 970,838 - Psyr_0852 0.62 -3.7 970,838 - Psyr_0852 0.62 +1.6 970,838 - Psyr_0852 0.62 +0.0 970,838 - Psyr_0852 0.62 -3.8 970,934 + Psyr_0852 0.70 -3.4 970,935 - Psyr_0852 0.70 +3.6 970,942 + Psyr_0852 0.70 -1.9 970,942 + Psyr_0852 0.70 -2.7 970,943 - Psyr_0852 0.70 +1.0 971,033 + Psyr_0852 0.78 +2.3 971,034 - Psyr_0852 0.78 +0.0 971,034 - Psyr_0852 0.78 +0.7 971,034 - Psyr_0852 0.78 -2.9 971,034 - Psyr_0852 0.78 +0.6 971,035 + Psyr_0852 0.78 +0.0 971,035 + Psyr_0852 0.78 +2.0 971,035 + Psyr_0852 0.78 +2.3 971,035 + Psyr_0852 0.78 -3.6 971,035 + Psyr_0852 0.78 -0.1 971,036 - Psyr_0852 0.78 +0.0 971,036 - Psyr_0852 0.78 +0.0 971,036 - Psyr_0852 0.78 -1.1 971,036 - Psyr_0852 0.78 -1.4 971,036 - Psyr_0852 0.78 +1.6 971,036 - Psyr_0852 0.78 +3.6 971,036 - Psyr_0852 0.78 +1.0 971,036 - Psyr_0852 0.78 +1.6 971,090 - Psyr_0852 0.82 -1.8 971,090 - Psyr_0852 0.82 +1.0 971,090 - Psyr_0852 0.82 -1.0 971,121 + Psyr_0852 0.85 -0.6 971,121 + Psyr_0852 0.85 +3.3 971,122 - Psyr_0852 0.85 -0.4 971,122 - Psyr_0852 0.85 -2.6 971,127 + Psyr_0852 0.85 -4.1 971,128 - Psyr_0852 0.85 -1.3 971,145 + Psyr_0852 0.87 +0.3 971,145 + Psyr_0852 0.87 -1.0 971,145 + Psyr_0852 0.87 -3.3 971,145 + Psyr_0852 0.87 -1.1 971,212 + +1.0 971,247 + -0.9 971,247 + -3.2 971,247 + +0.1 971,247 + -0.8 971,247 + -3.1 971,247 + +3.5 971,247 + -4.9 971,247 + -0.1 971,247 + +2.0 971,247 + +0.4 971,247 + +4.3 971,248 - +2.6 971,248 - +1.6 971,248 - -3.4 971,248 - -0.8 971,248 - +2.6 971,248 - -1.7 971,248 - -2.0 971,248 - +2.8 971,248 - +2.0 971,248 - -3.0 971,250 + +0.4 971,250 + +2.0 971,251 - +2.0 971,251 - -2.1 971,300 + -2.3 971,301 - -1.0 971,337 + +1.6 971,337 + +1.2 971,337 + +0.0 971,337 + -3.4 971,338 - -2.2 971,338 - +2.6 971,343 + -1.7 971,343 + +0.6 971,344 - -0.3 971,344 - -1.9 971,344 - -1.8 971,353 + -3.6 971,353 + -3.8 971,353 + +3.8 971,382 - -1.2 971,436 - +0.3 971,469 + -2.1 971,470 - -0.8 971,485 + -3.2 971,486 - -1.0 971,536 + +2.3 971,536 + +0.0 971,537 - +0.9 971,560 + -2.3 971,560 + +1.2 971,560 + +0.0 971,560 + +0.0 971,560 + +3.5 971,560 + +2.8 971,561 - +2.3 971,561 - -0.5 971,561 - +3.6 971,561 - +0.4 971,561 - +0.7 971,561 - -0.1 971,564 + -0.6 971,564 + +0.8 971,564 + +3.2 971,564 + +3.2 971,564 + -0.7 971,565 - +1.1 971,565 - +2.0 971,565 - +0.4 971,565 - +3.3 971,719 + -0.7 971,719 + -2.1 971,719 + -2.9 971,720 - +1.0 971,720 - +5.0 971,720 - +4.4 971,722 + -1.4 971,722 + -2.3 971,776 + Psyr_0853 0.10 -2.0 971,776 + Psyr_0853 0.10 -2.1 971,776 + Psyr_0853 0.10 -0.6 971,776 + Psyr_0853 0.10 -2.2 971,776 + Psyr_0853 0.10 +0.1 971,776 + Psyr_0853 0.10 -0.4 971,776 + Psyr_0853 0.10 -3.2 971,777 - Psyr_0853 0.10 -1.8 971,777 - Psyr_0853 0.10 +5.6 971,777 - Psyr_0853 0.10 +0.9 971,777 - Psyr_0853 0.10 +1.4 971,777 - Psyr_0853 0.10 +1.2 971,777 - Psyr_0853 0.10 -0.3 971,944 + Psyr_0853 0.16 -0.8 971,944 + Psyr_0853 0.16 +0.2 971,944 + Psyr_0853 0.16 -3.0 971,945 - Psyr_0853 0.16 +3.3 972,025 + Psyr_0853 0.19 +1.6 972,172 + Psyr_0853 0.24 -0.4 972,172 + Psyr_0853 0.24 +3.0 972,198 - Psyr_0853 0.25 -2.3 972,268 + Psyr_0853 0.28 +0.0 972,268 + Psyr_0853 0.28 -0.9 972,282 + Psyr_0853 0.28 -2.2 972,283 - Psyr_0853 0.28 +5.0 972,283 - Psyr_0853 0.28 -2.4
Or see this region's nucleotide sequence