Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0776 and Psyr_0777 are separated by 258 nucleotides Psyr_0777 and Psyr_0778 are separated by 667 nucleotides
Psyr_0776: Psyr_0776 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 880,439 to 881,383
_0776
Psyr_0777: Psyr_0777 - transcriptional regulator, LacI family, at 881,642 to 882,655
_0777
Psyr_0778: Psyr_0778 - type III effector HopAG1, at 883,323 to 885,473
_0778
Position (kb)
881
882
883 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 880.728 kb on + strand, within Psyr_0776 at 880.728 kb on + strand, within Psyr_0776 at 880.728 kb on + strand, within Psyr_0776 at 880.728 kb on + strand, within Psyr_0776 at 880.729 kb on - strand, within Psyr_0776 at 880.729 kb on - strand, within Psyr_0776 at 880.729 kb on - strand, within Psyr_0776 at 880.729 kb on - strand, within Psyr_0776 at 880.887 kb on + strand, within Psyr_0776 at 880.887 kb on + strand, within Psyr_0776 at 880.887 kb on + strand, within Psyr_0776 at 880.887 kb on + strand, within Psyr_0776 at 880.887 kb on + strand, within Psyr_0776 at 880.887 kb on + strand, within Psyr_0776 at 880.888 kb on - strand, within Psyr_0776 at 880.888 kb on - strand, within Psyr_0776 at 880.888 kb on - strand, within Psyr_0776 at 880.888 kb on - strand, within Psyr_0776 at 880.888 kb on - strand, within Psyr_0776 at 880.888 kb on - strand, within Psyr_0776 at 880.888 kb on - strand, within Psyr_0776 at 880.947 kb on + strand, within Psyr_0776 at 880.947 kb on + strand, within Psyr_0776 at 880.947 kb on + strand, within Psyr_0776 at 880.948 kb on - strand, within Psyr_0776 at 880.948 kb on - strand, within Psyr_0776 at 880.948 kb on - strand, within Psyr_0776 at 880.948 kb on - strand, within Psyr_0776 at 880.959 kb on + strand, within Psyr_0776 at 881.089 kb on + strand, within Psyr_0776 at 881.140 kb on + strand, within Psyr_0776 at 881.140 kb on + strand, within Psyr_0776 at 881.140 kb on + strand, within Psyr_0776 at 881.140 kb on + strand, within Psyr_0776 at 881.141 kb on - strand, within Psyr_0776 at 881.141 kb on - strand, within Psyr_0776 at 881.142 kb on + strand, within Psyr_0776 at 881.142 kb on + strand, within Psyr_0776 at 881.142 kb on + strand, within Psyr_0776 at 881.142 kb on + strand, within Psyr_0776 at 881.142 kb on + strand, within Psyr_0776 at 881.142 kb on + strand, within Psyr_0776 at 881.142 kb on + strand, within Psyr_0776 at 881.143 kb on - strand, within Psyr_0776 at 881.143 kb on - strand at 881.143 kb on - strand, within Psyr_0776 at 881.143 kb on - strand, within Psyr_0776 at 881.143 kb on - strand, within Psyr_0776 at 881.143 kb on - strand, within Psyr_0776 at 881.143 kb on - strand, within Psyr_0776 at 881.256 kb on + strand, within Psyr_0776 at 881.256 kb on + strand, within Psyr_0776 at 881.256 kb on + strand, within Psyr_0776 at 881.257 kb on - strand, within Psyr_0776 at 881.257 kb on - strand, within Psyr_0776 at 881.257 kb on - strand, within Psyr_0776 at 881.257 kb on - strand, within Psyr_0776 at 881.395 kb on + strand at 881.542 kb on + strand at 881.542 kb on + strand at 881.542 kb on + strand at 881.625 kb on + strand at 881.625 kb on + strand at 881.625 kb on + strand at 881.626 kb on - strand at 881.626 kb on - strand at 881.661 kb on - strand at 881.661 kb on - strand at 881.788 kb on + strand, within Psyr_0777 at 881.788 kb on + strand, within Psyr_0777 at 881.788 kb on + strand, within Psyr_0777 at 881.788 kb on + strand, within Psyr_0777 at 881.788 kb on + strand, within Psyr_0777 at 881.789 kb on - strand, within Psyr_0777 at 881.789 kb on - strand, within Psyr_0777 at 881.789 kb on - strand, within Psyr_0777 at 881.817 kb on + strand, within Psyr_0777 at 881.866 kb on + strand, within Psyr_0777 at 881.955 kb on - strand, within Psyr_0777 at 881.955 kb on - strand, within Psyr_0777 at 882.010 kb on - strand, within Psyr_0777 at 882.010 kb on - strand, within Psyr_0777 at 882.064 kb on - strand, within Psyr_0777 at 882.138 kb on + strand, within Psyr_0777 at 882.139 kb on - strand, within Psyr_0777 at 882.139 kb on - strand, within Psyr_0777 at 882.139 kb on - strand, within Psyr_0777 at 882.226 kb on + strand, within Psyr_0777 at 882.226 kb on + strand, within Psyr_0777 at 882.227 kb on - strand, within Psyr_0777 at 882.376 kb on + strand, within Psyr_0777 at 882.377 kb on - strand, within Psyr_0777 at 882.377 kb on - strand, within Psyr_0777 at 882.377 kb on - strand, within Psyr_0777 at 882.378 kb on + strand, within Psyr_0777 at 882.378 kb on + strand at 882.378 kb on + strand, within Psyr_0777 at 882.378 kb on + strand, within Psyr_0777 at 882.379 kb on - strand, within Psyr_0777 at 882.379 kb on - strand, within Psyr_0777 at 882.379 kb on - strand, within Psyr_0777 at 882.541 kb on + strand, within Psyr_0777 at 882.585 kb on + strand at 882.687 kb on + strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.855 kb on + strand at 882.855 kb on + strand at 882.856 kb on - strand at 882.861 kb on + strand at 882.862 kb on - strand at 882.862 kb on - strand at 882.865 kb on + strand at 882.865 kb on + strand at 882.865 kb on + strand at 882.865 kb on + strand at 882.869 kb on + strand at 882.869 kb on + strand at 882.869 kb on + strand at 882.874 kb on - strand at 882.883 kb on + strand at 882.883 kb on + strand at 882.884 kb on - strand at 882.906 kb on + strand at 882.907 kb on - strand at 882.945 kb on + strand at 882.945 kb on + strand at 882.945 kb on + strand at 882.945 kb on + strand at 882.946 kb on - strand at 882.946 kb on - strand at 882.946 kb on - strand at 882.946 kb on - strand at 882.955 kb on - strand at 883.001 kb on + strand at 883.002 kb on - strand at 883.002 kb on - strand at 883.002 kb on - strand at 883.002 kb on - strand at 883.002 kb on - strand at 883.009 kb on + strand at 883.010 kb on - strand at 883.093 kb on - strand at 883.138 kb on - strand at 883.140 kb on - strand at 883.150 kb on + strand at 883.250 kb on - strand at 883.309 kb on - strand at 883.309 kb on - strand at 883.340 kb on + strand at 883.341 kb on - strand at 883.370 kb on - strand at 883.448 kb on + strand at 883.448 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.509 kb on - strand at 883.597 kb on - strand, within Psyr_0778 at 883.597 kb on - strand, within Psyr_0778
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 880,728 + Psyr_0776 0.31 -2.1 880,728 + Psyr_0776 0.31 -0.0 880,728 + Psyr_0776 0.31 -0.8 880,728 + Psyr_0776 0.31 -1.6 880,729 - Psyr_0776 0.31 -0.8 880,729 - Psyr_0776 0.31 -0.7 880,729 - Psyr_0776 0.31 +3.9 880,729 - Psyr_0776 0.31 -1.9 880,887 + Psyr_0776 0.47 -1.6 880,887 + Psyr_0776 0.47 -0.5 880,887 + Psyr_0776 0.47 -3.8 880,887 + Psyr_0776 0.47 +4.1 880,887 + Psyr_0776 0.47 -0.4 880,887 + Psyr_0776 0.47 -0.8 880,888 - Psyr_0776 0.48 +1.0 880,888 - Psyr_0776 0.48 -0.7 880,888 - Psyr_0776 0.48 +3.4 880,888 - Psyr_0776 0.48 -1.1 880,888 - Psyr_0776 0.48 +0.3 880,888 - Psyr_0776 0.48 +3.4 880,888 - Psyr_0776 0.48 +0.1 880,947 + Psyr_0776 0.54 -0.6 880,947 + Psyr_0776 0.54 +1.2 880,947 + Psyr_0776 0.54 +0.9 880,948 - Psyr_0776 0.54 +2.3 880,948 - Psyr_0776 0.54 -2.8 880,948 - Psyr_0776 0.54 +0.5 880,948 - Psyr_0776 0.54 -0.6 880,959 + Psyr_0776 0.55 -2.1 881,089 + Psyr_0776 0.69 +2.0 881,140 + Psyr_0776 0.74 -1.2 881,140 + Psyr_0776 0.74 +2.0 881,140 + Psyr_0776 0.74 +1.0 881,140 + Psyr_0776 0.74 -2.8 881,141 - Psyr_0776 0.74 -0.4 881,141 - Psyr_0776 0.74 +3.8 881,142 + Psyr_0776 0.74 -0.3 881,142 + Psyr_0776 0.74 -2.4 881,142 + Psyr_0776 0.74 +0.2 881,142 + Psyr_0776 0.74 -0.0 881,142 + Psyr_0776 0.74 +3.3 881,142 + Psyr_0776 0.74 +1.6 881,142 + Psyr_0776 0.74 -2.4 881,143 - Psyr_0776 0.74 -1.6 881,143 - -0.0 881,143 - Psyr_0776 0.74 -0.0 881,143 - Psyr_0776 0.74 -1.4 881,143 - Psyr_0776 0.74 -1.1 881,143 - Psyr_0776 0.74 -0.8 881,143 - Psyr_0776 0.74 -1.4 881,256 + Psyr_0776 0.86 -0.0 881,256 + Psyr_0776 0.86 +3.2 881,256 + Psyr_0776 0.86 +2.6 881,257 - Psyr_0776 0.87 -1.0 881,257 - Psyr_0776 0.87 -1.9 881,257 - Psyr_0776 0.87 -0.5 881,257 - Psyr_0776 0.87 -2.1 881,395 + +2.0 881,542 + +1.2 881,542 + -0.1 881,542 + -0.0 881,625 + +2.3 881,625 + +3.3 881,625 + -1.0 881,626 - -3.6 881,626 - -2.6 881,661 - -1.3 881,661 - -2.0 881,788 + Psyr_0777 0.14 -2.8 881,788 + Psyr_0777 0.14 +0.7 881,788 + Psyr_0777 0.14 +3.0 881,788 + Psyr_0777 0.14 -1.9 881,788 + Psyr_0777 0.14 -0.0 881,789 - Psyr_0777 0.14 +2.3 881,789 - Psyr_0777 0.14 -1.5 881,789 - Psyr_0777 0.14 -1.0 881,817 + Psyr_0777 0.17 +2.6 881,866 + Psyr_0777 0.22 +3.4 881,955 - Psyr_0777 0.31 -1.8 881,955 - Psyr_0777 0.31 -1.4 882,010 - Psyr_0777 0.36 +0.0 882,010 - Psyr_0777 0.36 -1.5 882,064 - Psyr_0777 0.42 -0.6 882,138 + Psyr_0777 0.49 +1.6 882,139 - Psyr_0777 0.49 -1.2 882,139 - Psyr_0777 0.49 +2.8 882,139 - Psyr_0777 0.49 -0.5 882,226 + Psyr_0777 0.58 -1.7 882,226 + Psyr_0777 0.58 -0.7 882,227 - Psyr_0777 0.58 +3.2 882,376 + Psyr_0777 0.72 -1.4 882,377 - Psyr_0777 0.72 +1.4 882,377 - Psyr_0777 0.72 -0.7 882,377 - Psyr_0777 0.72 -0.9 882,378 + Psyr_0777 0.73 -3.3 882,378 + -0.0 882,378 + Psyr_0777 0.73 -2.2 882,378 + Psyr_0777 0.73 -1.1 882,379 - Psyr_0777 0.73 -1.0 882,379 - Psyr_0777 0.73 -2.4 882,379 - Psyr_0777 0.73 -1.4 882,541 + Psyr_0777 0.89 +2.0 882,585 + -1.9 882,687 + -1.9 882,688 - +2.8 882,688 - +2.6 882,688 - -0.7 882,688 - +4.2 882,688 - -0.7 882,688 - -1.8 882,688 - -2.5 882,855 + -0.0 882,855 + +1.6 882,856 - -2.2 882,861 + -2.5 882,862 - -1.2 882,862 - -1.1 882,865 + -1.7 882,865 + +2.8 882,865 + -1.5 882,865 + -0.4 882,869 + -0.0 882,869 + -4.1 882,869 + -1.5 882,874 - +2.0 882,883 + +1.0 882,883 + -0.4 882,884 - -1.4 882,906 + -1.6 882,907 - -1.5 882,945 + -3.1 882,945 + -3.2 882,945 + -0.0 882,945 + +3.6 882,946 - -0.0 882,946 - -3.7 882,946 - -0.0 882,946 - -2.2 882,955 - -0.5 883,001 + -2.1 883,002 - +2.0 883,002 - +2.0 883,002 - -1.8 883,002 - -3.5 883,002 - -2.0 883,009 + +1.0 883,010 - +0.5 883,093 - +1.6 883,138 - -2.1 883,140 - -0.0 883,150 + -0.3 883,250 - -1.4 883,309 - +1.0 883,309 - -5.0 883,340 + -2.9 883,341 - +1.6 883,370 - -0.8 883,448 + -0.0 883,448 + +3.4 883,508 + -0.5 883,508 + +1.3 883,508 + -0.7 883,509 - -2.4 883,597 - Psyr_0778 0.13 -2.3 883,597 - Psyr_0778 0.13 -2.3
Or see this region's nucleotide sequence