Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0771 and Psyr_0772 are separated by 12 nucleotides Psyr_0772 and Psyr_0773 overlap by 4 nucleotides Psyr_0773 and Psyr_0774 overlap by 4 nucleotides
Psyr_0771: Psyr_0771 - acetylornithine deacetylase, at 875,599 to 876,741
_0771
Psyr_0772: Psyr_0772 - Protein of unknown function DUF1355, at 876,754 to 877,509
_0772
Psyr_0773: Psyr_0773 - Aryldialkylphosphatase, at 877,506 to 878,621
_0773
Psyr_0774: Psyr_0774 - monosaccharide ABC transporter membrane protein, CUT2 family, at 878,618 to 879,637
_0774
Position (kb) 877
878
879 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 876.726 kb on + strand at 876.727 kb on - strand at 876.727 kb on - strand at 876.727 kb on - strand at 876.968 kb on + strand, within Psyr_0772 at 876.980 kb on + strand, within Psyr_0772 at 877.070 kb on + strand, within Psyr_0772 at 877.085 kb on - strand, within Psyr_0772 at 877.194 kb on - strand, within Psyr_0772 at 877.194 kb on - strand, within Psyr_0772 at 877.194 kb on - strand, within Psyr_0772 at 877.267 kb on - strand, within Psyr_0772 at 877.495 kb on + strand at 877.651 kb on + strand, within Psyr_0773 at 877.651 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.810 kb on + strand, within Psyr_0773 at 877.810 kb on + strand, within Psyr_0773 at 877.811 kb on - strand, within Psyr_0773 at 877.811 kb on - strand, within Psyr_0773 at 877.831 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.207 kb on - strand, within Psyr_0773 at 878.207 kb on - strand, within Psyr_0773 at 878.207 kb on - strand, within Psyr_0773 at 878.228 kb on + strand, within Psyr_0773 at 878.228 kb on + strand, within Psyr_0773 at 878.654 kb on + strand at 878.654 kb on + strand at 878.654 kb on + strand at 878.654 kb on + strand at 878.655 kb on - strand at 878.655 kb on - strand at 878.655 kb on - strand at 878.655 kb on - strand at 878.687 kb on + strand at 878.687 kb on + strand at 878.716 kb on - strand at 878.768 kb on - strand, within Psyr_0774 at 878.946 kb on + strand, within Psyr_0774 at 878.946 kb on + strand, within Psyr_0774 at 879.168 kb on + strand, within Psyr_0774 at 879.168 kb on + strand, within Psyr_0774 at 879.203 kb on - strand, within Psyr_0774 at 879.203 kb on - strand, within Psyr_0774 at 879.491 kb on + strand, within Psyr_0774
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 876,726 + -2.5 876,727 - +3.2 876,727 - -2.2 876,727 - -1.3 876,968 + Psyr_0772 0.28 -0.6 876,980 + Psyr_0772 0.30 +1.6 877,070 + Psyr_0772 0.42 +2.6 877,085 - Psyr_0772 0.44 +3.3 877,194 - Psyr_0772 0.58 -2.6 877,194 - Psyr_0772 0.58 +1.0 877,194 - Psyr_0772 0.58 -0.7 877,267 - Psyr_0772 0.68 -0.2 877,495 + +1.2 877,651 + Psyr_0773 0.13 -0.9 877,651 + Psyr_0773 0.13 +1.4 877,807 + Psyr_0773 0.27 -2.0 877,807 + Psyr_0773 0.27 -0.4 877,807 + Psyr_0773 0.27 -1.3 877,807 + Psyr_0773 0.27 -1.7 877,807 + Psyr_0773 0.27 -0.5 877,807 + Psyr_0773 0.27 +3.8 877,807 + Psyr_0773 0.27 +0.3 877,807 + Psyr_0773 0.27 +4.2 877,807 + Psyr_0773 0.27 -2.6 877,807 + Psyr_0773 0.27 +2.4 877,807 + Psyr_0773 0.27 -0.2 877,807 + Psyr_0773 0.27 -0.0 877,807 + Psyr_0773 0.27 -4.3 877,807 + Psyr_0773 0.27 -2.8 877,808 - Psyr_0773 0.27 +0.9 877,808 - Psyr_0773 0.27 -0.0 877,808 - Psyr_0773 0.27 +0.3 877,808 - Psyr_0773 0.27 +0.9 877,808 - Psyr_0773 0.27 +3.3 877,808 - Psyr_0773 0.27 +2.3 877,808 - Psyr_0773 0.27 +3.3 877,810 + Psyr_0773 0.27 -4.7 877,810 + Psyr_0773 0.27 -0.0 877,811 - Psyr_0773 0.27 +3.7 877,811 - Psyr_0773 0.27 -0.0 877,831 + Psyr_0773 0.29 -1.9 878,182 + Psyr_0773 0.61 +2.0 878,182 + Psyr_0773 0.61 -1.7 878,182 + Psyr_0773 0.61 -0.0 878,182 + Psyr_0773 0.61 +0.5 878,182 + Psyr_0773 0.61 -1.6 878,183 - Psyr_0773 0.61 -0.5 878,183 - Psyr_0773 0.61 +0.4 878,183 - Psyr_0773 0.61 +0.4 878,183 - Psyr_0773 0.61 -3.7 878,183 - Psyr_0773 0.61 +1.0 878,207 - Psyr_0773 0.63 +1.0 878,207 - Psyr_0773 0.63 -1.2 878,207 - Psyr_0773 0.63 +1.0 878,228 + Psyr_0773 0.65 -4.8 878,228 + Psyr_0773 0.65 +4.2 878,654 + +1.3 878,654 + -1.1 878,654 + +2.0 878,654 + +3.0 878,655 - +3.0 878,655 - -0.2 878,655 - -2.4 878,655 - +2.8 878,687 + +1.1 878,687 + -1.3 878,716 - -0.9 878,768 - Psyr_0774 0.15 -2.9 878,946 + Psyr_0774 0.32 -4.5 878,946 + Psyr_0774 0.32 -2.1 879,168 + Psyr_0774 0.54 -1.2 879,168 + Psyr_0774 0.54 -0.0 879,203 - Psyr_0774 0.57 -2.2 879,203 - Psyr_0774 0.57 +2.3 879,491 + Psyr_0774 0.86 -2.6
Or see this region's nucleotide sequence