Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0730 and Psyr_0731 overlap by 4 nucleotides Psyr_0731 and Psyr_0732 are separated by 60 nucleotides Psyr_0732 and Psyr_0733 overlap by 8 nucleotides Psyr_0733 and Psyr_0734 are separated by 430 nucleotides
Psyr_0730: Psyr_0730 - CDS, at 837,051 to 837,347
_0730
Psyr_0731: Psyr_0731 - CDS, at 837,344 to 838,102
_0731
Psyr_0732: Psyr_0732 - CDS, at 838,163 to 838,300
_0732
Psyr_0733: Psyr_0733 - Relaxase, at 838,293 to 839,249
_0733
Psyr_0734: Psyr_0734 - Protein of unknown function DUF159, at 839,680 to 840,123
_0734
Position (kb) 838
839
840 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 837.593 kb on + strand, within Psyr_0731 at 837.593 kb on + strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.627 kb on - strand, within Psyr_0731 at 837.627 kb on - strand, within Psyr_0731 at 837.627 kb on - strand, within Psyr_0731 at 838.003 kb on + strand, within Psyr_0731 at 838.037 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.294 kb on + strand at 838.295 kb on - strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.360 kb on - strand at 838.360 kb on - strand at 838.360 kb on - strand at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.597 kb on + strand, within Psyr_0733 at 838.689 kb on + strand, within Psyr_0733 at 838.689 kb on + strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.726 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.763 kb on - strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.964 kb on - strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.249 kb on + strand at 839.249 kb on + strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.293 kb on - strand at 839.293 kb on - strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.339 kb on + strand at 839.339 kb on + strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.347 kb on + strand at 839.348 kb on - strand at 839.348 kb on - strand at 839.433 kb on - strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.444 kb on - strand at 839.486 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.542 kb on - strand at 839.599 kb on + strand at 839.992 kb on - strand, within Psyr_0734 at 839.997 kb on + strand, within Psyr_0734 at 839.998 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 837,593 + Psyr_0731 0.33 -1.5 837,593 + Psyr_0731 0.33 -0.3 837,594 - Psyr_0731 0.33 +1.0 837,594 - Psyr_0731 0.33 +3.3 837,594 - Psyr_0731 0.33 +3.2 837,594 - Psyr_0731 0.33 -3.0 837,594 - Psyr_0731 0.33 +2.0 837,594 - Psyr_0731 0.33 -1.6 837,594 - Psyr_0731 0.33 +3.9 837,627 - Psyr_0731 0.37 +2.0 837,627 - Psyr_0731 0.37 +3.5 837,627 - Psyr_0731 0.37 +0.0 838,003 + Psyr_0731 0.87 +0.4 838,037 - -3.2 838,135 - -3.8 838,135 - -1.6 838,135 - -1.6 838,135 - +2.0 838,135 - +2.0 838,135 - -3.9 838,135 - +0.0 838,135 - -1.2 838,135 - +0.0 838,135 - -3.4 838,135 - -1.3 838,294 + +0.0 838,295 - -1.9 838,343 + +1.0 838,343 + -1.9 838,343 + +0.9 838,343 + +3.0 838,343 + -4.9 838,344 - -3.0 838,344 - -4.8 838,344 - -3.0 838,344 - +2.3 838,344 - +3.6 838,344 - -3.0 838,344 - -3.9 838,344 - +2.3 838,360 - -2.2 838,360 - -0.8 838,360 - -3.4 838,508 + Psyr_0733 0.22 -3.9 838,508 + Psyr_0733 0.22 -0.7 838,508 + Psyr_0733 0.22 -4.0 838,508 + Psyr_0733 0.22 -3.2 838,508 + Psyr_0733 0.22 -2.4 838,508 + Psyr_0733 0.22 -1.0 838,509 - Psyr_0733 0.23 -2.5 838,509 - Psyr_0733 0.23 +0.0 838,509 - Psyr_0733 0.23 -3.9 838,509 - Psyr_0733 0.23 +1.6 838,509 - Psyr_0733 0.23 +1.9 838,509 - Psyr_0733 0.23 -3.3 838,597 + Psyr_0733 0.32 -1.1 838,689 + Psyr_0733 0.41 -3.3 838,689 + Psyr_0733 0.41 -0.1 838,690 - Psyr_0733 0.41 -3.0 838,690 - Psyr_0733 0.41 -3.3 838,690 - Psyr_0733 0.41 +2.3 838,690 - Psyr_0733 0.41 +3.0 838,690 - Psyr_0733 0.41 +1.3 838,690 - Psyr_0733 0.41 -2.1 838,690 - Psyr_0733 0.41 -0.9 838,699 + Psyr_0733 0.42 +0.0 838,699 + Psyr_0733 0.42 +3.3 838,699 + +2.3 838,699 + Psyr_0733 0.42 -2.2 838,699 + Psyr_0733 0.42 -3.2 838,699 + Psyr_0733 0.42 -1.5 838,700 - Psyr_0733 0.43 -1.0 838,700 - Psyr_0733 0.43 -3.0 838,700 - Psyr_0733 0.43 +3.8 838,700 - Psyr_0733 0.43 +2.8 838,726 - Psyr_0733 0.45 +1.0 838,751 - Psyr_0733 0.48 -0.6 838,751 - Psyr_0733 0.48 +4.5 838,751 - Psyr_0733 0.48 +0.3 838,763 - Psyr_0733 0.49 -1.7 838,830 + Psyr_0733 0.56 +0.3 838,830 + Psyr_0733 0.56 -2.2 838,939 + Psyr_0733 0.68 +2.3 838,939 + Psyr_0733 0.68 +4.9 838,940 - Psyr_0733 0.68 +2.6 838,940 - Psyr_0733 0.68 +1.6 838,940 - Psyr_0733 0.68 -2.0 838,940 - Psyr_0733 0.68 -3.6 838,964 - Psyr_0733 0.70 -2.0 839,005 + Psyr_0733 0.74 -1.1 839,005 + Psyr_0733 0.74 +0.0 839,005 + Psyr_0733 0.74 -0.5 839,005 + Psyr_0733 0.74 -1.3 839,006 - Psyr_0733 0.75 -3.0 839,006 - Psyr_0733 0.75 -1.8 839,077 + Psyr_0733 0.82 +0.0 839,077 + Psyr_0733 0.82 -0.9 839,077 + Psyr_0733 0.82 +3.7 839,077 + Psyr_0733 0.82 -0.8 839,077 + Psyr_0733 0.82 +0.0 839,077 + Psyr_0733 0.82 -1.4 839,077 + Psyr_0733 0.82 -3.5 839,077 + Psyr_0733 0.82 +2.8 839,249 + -4.1 839,249 + +0.0 839,250 - -1.7 839,250 - +0.0 839,250 - +2.6 839,250 - +2.8 839,250 - +2.0 839,250 - -3.5 839,252 - -1.5 839,252 - -0.7 839,252 - -0.9 839,252 - +0.0 839,252 - +2.6 839,252 - -1.6 839,252 - +0.0 839,252 - +2.0 839,252 - -0.9 839,252 - -1.7 839,252 - -2.2 839,252 - -1.5 839,252 - -3.7 839,252 - -2.3 839,252 - -1.9 839,291 - -3.6 839,291 - +0.9 839,291 - -0.6 839,291 - +1.0 839,291 - -1.0 839,291 - +1.0 839,291 - -2.5 839,291 - -1.6 839,291 - -1.6 839,291 - -2.5 839,293 - -2.3 839,293 - -2.1 839,319 + +2.8 839,319 + -1.2 839,319 + +3.2 839,319 + -3.5 839,319 + -2.5 839,319 + -4.1 839,319 + +0.0 839,319 + -2.6 839,319 + -1.0 839,319 + +3.0 839,319 + -5.6 839,319 + -4.9 839,319 + +0.0 839,339 + -3.1 839,339 + +0.0 839,340 - -1.4 839,340 - -2.1 839,340 - -1.7 839,341 + -3.6 839,341 + +0.0 839,341 + -1.1 839,341 + -5.2 839,341 + -3.7 839,341 + -3.3 839,341 + -0.6 839,341 + -4.1 839,341 + +0.0 839,342 - +2.0 839,342 - +2.0 839,342 - -2.3 839,342 - -2.1 839,347 + -2.6 839,348 - +1.1 839,348 - +0.0 839,433 - -3.7 839,439 + +2.6 839,439 + -1.8 839,439 + +0.8 839,439 + -3.0 839,444 - -1.0 839,486 + +3.5 839,541 + -4.2 839,541 + -4.9 839,541 + +0.0 839,542 - -3.7 839,599 + -0.8 839,992 - Psyr_0734 0.70 +3.6 839,997 + Psyr_0734 0.71 +2.3 839,998 - Psyr_0734 0.72 +0.0 840,012 - Psyr_0734 0.75 +0.0 840,012 - Psyr_0734 0.75 +4.1 840,012 - Psyr_0734 0.75 +3.2 840,012 - Psyr_0734 0.75 -0.2 840,012 - Psyr_0734 0.75 -2.1
Or see this region's nucleotide sequence