Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0731

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0729 and Psyr_0730 overlap by 59 nucleotidesPsyr_0730 and Psyr_0731 overlap by 4 nucleotidesPsyr_0731 and Psyr_0732 are separated by 60 nucleotidesPsyr_0732 and Psyr_0733 overlap by 8 nucleotides Psyr_0729: Psyr_0729 - CDS, at 835,946 to 837,109 _0729 Psyr_0730: Psyr_0730 - CDS, at 837,051 to 837,347 _0730 Psyr_0731: Psyr_0731 - CDS, at 837,344 to 838,102 _0731 Psyr_0732: Psyr_0732 - CDS, at 838,163 to 838,300 _0732 Psyr_0733: Psyr_0733 - Relaxase, at 838,293 to 839,249 _0733 Position (kb) 837 838 839Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 836.369 kb on - strand, within Psyr_0729at 836.696 kb on + strand, within Psyr_0729at 836.741 kb on - strand, within Psyr_0729at 836.847 kb on - strand, within Psyr_0729at 836.938 kb on + strand, within Psyr_0729at 836.938 kb on + strand, within Psyr_0729at 837.065 kb on + strandat 837.065 kb on + strandat 837.065 kb on + strandat 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.117 kb on + strand, within Psyr_0730at 837.117 kb on + strand, within Psyr_0730at 837.117 kb on + strand, within Psyr_0730at 837.117 kb on + strand, within Psyr_0730at 837.117 kb on + strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.140 kb on - strand, within Psyr_0730at 837.140 kb on - strand, within Psyr_0730at 837.140 kb on - strand, within Psyr_0730at 837.140 kb on - strand, within Psyr_0730at 837.140 kb on - strand, within Psyr_0730at 837.593 kb on + strand, within Psyr_0731at 837.593 kb on + strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.627 kb on - strand, within Psyr_0731at 837.627 kb on - strand, within Psyr_0731at 837.627 kb on - strand, within Psyr_0731at 838.003 kb on + strand, within Psyr_0731at 838.037 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.294 kb on + strandat 838.295 kb on - strandat 838.343 kb on + strandat 838.343 kb on + strandat 838.343 kb on + strandat 838.343 kb on + strandat 838.343 kb on + strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.360 kb on - strandat 838.360 kb on - strandat 838.360 kb on - strandat 838.508 kb on + strand, within Psyr_0733at 838.508 kb on + strand, within Psyr_0733at 838.508 kb on + strand, within Psyr_0733at 838.508 kb on + strand, within Psyr_0733at 838.508 kb on + strand, within Psyr_0733at 838.508 kb on + strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.597 kb on + strand, within Psyr_0733at 838.689 kb on + strand, within Psyr_0733at 838.689 kb on + strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strandat 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.726 kb on - strand, within Psyr_0733at 838.751 kb on - strand, within Psyr_0733at 838.751 kb on - strand, within Psyr_0733at 838.751 kb on - strand, within Psyr_0733at 838.763 kb on - strand, within Psyr_0733at 838.830 kb on + strand, within Psyr_0733at 838.830 kb on + strand, within Psyr_0733at 838.939 kb on + strand, within Psyr_0733at 838.939 kb on + strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.964 kb on - strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.006 kb on - strand, within Psyr_0733at 839.006 kb on - strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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836,369 - Psyr_0729 0.36 +2.8
836,696 + Psyr_0729 0.64 -2.4
836,741 - Psyr_0729 0.68 -1.2
836,847 - Psyr_0729 0.77 -0.2
836,938 + Psyr_0729 0.85 -1.2
836,938 + Psyr_0729 0.85 +0.0
837,065 + -2.0
837,065 + -2.0
837,065 + -3.3
837,115 + Psyr_0730 0.22 +0.0
837,115 + Psyr_0730 0.22 -2.0
837,115 + Psyr_0730 0.22 +1.0
837,115 + Psyr_0730 0.22 +0.1
837,115 + Psyr_0730 0.22 -3.3
837,115 + Psyr_0730 0.22 -1.6
837,115 + Psyr_0730 0.22 +2.6
837,115 + Psyr_0730 0.22 +2.0
837,115 + Psyr_0730 0.22 +3.3
837,115 + Psyr_0730 0.22 -4.4
837,115 + Psyr_0730 0.22 +0.8
837,115 + Psyr_0730 0.22 -1.8
837,115 + Psyr_0730 0.22 +1.6
837,116 - Psyr_0730 0.22 +0.4
837,116 - Psyr_0730 0.22 -2.3
837,116 - Psyr_0730 0.22 -0.3
837,116 - Psyr_0730 0.22 -2.8
837,116 - Psyr_0730 0.22 +0.0
837,116 - Psyr_0730 0.22 -0.7
837,116 - Psyr_0730 0.22 -0.6
837,116 - Psyr_0730 0.22 -0.8
837,116 - Psyr_0730 0.22 -1.0
837,116 - Psyr_0730 0.22 +3.5
837,116 - Psyr_0730 0.22 -0.8
837,116 - Psyr_0730 0.22 +1.5
837,116 - Psyr_0730 0.22 +0.0
837,116 - Psyr_0730 0.22 +2.8
837,116 - Psyr_0730 0.22 -2.0
837,116 - Psyr_0730 0.22 -0.6
837,116 - Psyr_0730 0.22 -1.8
837,117 + Psyr_0730 0.22 -3.6
837,117 + Psyr_0730 0.22 +0.0
837,117 + Psyr_0730 0.22 -3.3
837,117 + Psyr_0730 0.22 -2.8
837,117 + Psyr_0730 0.22 +3.2
837,118 - Psyr_0730 0.23 -1.1
837,118 - Psyr_0730 0.23 -0.3
837,118 - Psyr_0730 0.23 +1.0
837,118 - Psyr_0730 0.23 -1.0
837,118 - Psyr_0730 0.23 -1.7
837,118 - Psyr_0730 0.23 +0.4
837,118 - Psyr_0730 0.23 +4.2
837,118 - Psyr_0730 0.23 +3.5
837,118 - Psyr_0730 0.23 +2.3
837,118 - Psyr_0730 0.23 -1.5
837,118 - Psyr_0730 0.23 -1.5
837,118 - Psyr_0730 0.23 +3.5
837,140 - Psyr_0730 0.30 +1.6
837,140 - Psyr_0730 0.30 +1.0
837,140 - Psyr_0730 0.30 -0.5
837,140 - Psyr_0730 0.30 -2.6
837,140 - Psyr_0730 0.30 +0.6
837,593 + Psyr_0731 0.33 -1.5
837,593 + Psyr_0731 0.33 -0.3
837,594 - Psyr_0731 0.33 +1.0
837,594 - Psyr_0731 0.33 +3.3
837,594 - Psyr_0731 0.33 +3.2
837,594 - Psyr_0731 0.33 -3.0
837,594 - Psyr_0731 0.33 +2.0
837,594 - Psyr_0731 0.33 -1.6
837,594 - Psyr_0731 0.33 +3.9
837,627 - Psyr_0731 0.37 +2.0
837,627 - Psyr_0731 0.37 +3.5
837,627 - Psyr_0731 0.37 +0.0
838,003 + Psyr_0731 0.87 +0.4
838,037 - -3.2
838,135 - -3.8
838,135 - -1.6
838,135 - -1.6
838,135 - +2.0
838,135 - +2.0
838,135 - -3.9
838,135 - +0.0
838,135 - -1.2
838,135 - +0.0
838,135 - -3.4
838,135 - -1.3
838,294 + +0.0
838,295 - -1.9
838,343 + +1.0
838,343 + -1.9
838,343 + +0.9
838,343 + +3.0
838,343 + -4.9
838,344 - -3.0
838,344 - -4.8
838,344 - -3.0
838,344 - +2.3
838,344 - +3.6
838,344 - -3.0
838,344 - -3.9
838,344 - +2.3
838,360 - -2.2
838,360 - -0.8
838,360 - -3.4
838,508 + Psyr_0733 0.22 -3.9
838,508 + Psyr_0733 0.22 -0.7
838,508 + Psyr_0733 0.22 -4.0
838,508 + Psyr_0733 0.22 -3.2
838,508 + Psyr_0733 0.22 -2.4
838,508 + Psyr_0733 0.22 -1.0
838,509 - Psyr_0733 0.23 -2.5
838,509 - Psyr_0733 0.23 +0.0
838,509 - Psyr_0733 0.23 -3.9
838,509 - Psyr_0733 0.23 +1.6
838,509 - Psyr_0733 0.23 +1.9
838,509 - Psyr_0733 0.23 -3.3
838,597 + Psyr_0733 0.32 -1.1
838,689 + Psyr_0733 0.41 -3.3
838,689 + Psyr_0733 0.41 -0.1
838,690 - Psyr_0733 0.41 -3.0
838,690 - Psyr_0733 0.41 -3.3
838,690 - Psyr_0733 0.41 +2.3
838,690 - Psyr_0733 0.41 +3.0
838,690 - Psyr_0733 0.41 +1.3
838,690 - Psyr_0733 0.41 -2.1
838,690 - Psyr_0733 0.41 -0.9
838,699 + Psyr_0733 0.42 +0.0
838,699 + Psyr_0733 0.42 +3.3
838,699 + +2.3
838,699 + Psyr_0733 0.42 -2.2
838,699 + Psyr_0733 0.42 -3.2
838,699 + Psyr_0733 0.42 -1.5
838,700 - Psyr_0733 0.43 -1.0
838,700 - Psyr_0733 0.43 -3.0
838,700 - Psyr_0733 0.43 +3.8
838,700 - Psyr_0733 0.43 +2.8
838,726 - Psyr_0733 0.45 +1.0
838,751 - Psyr_0733 0.48 -0.6
838,751 - Psyr_0733 0.48 +4.5
838,751 - Psyr_0733 0.48 +0.3
838,763 - Psyr_0733 0.49 -1.7
838,830 + Psyr_0733 0.56 +0.3
838,830 + Psyr_0733 0.56 -2.2
838,939 + Psyr_0733 0.68 +2.3
838,939 + Psyr_0733 0.68 +4.9
838,940 - Psyr_0733 0.68 +2.6
838,940 - Psyr_0733 0.68 +1.6
838,940 - Psyr_0733 0.68 -2.0
838,940 - Psyr_0733 0.68 -3.6
838,964 - Psyr_0733 0.70 -2.0
839,005 + Psyr_0733 0.74 -1.1
839,005 + Psyr_0733 0.74 +0.0
839,005 + Psyr_0733 0.74 -0.5
839,005 + Psyr_0733 0.74 -1.3
839,006 - Psyr_0733 0.75 -3.0
839,006 - Psyr_0733 0.75 -1.8
839,077 + Psyr_0733 0.82 +0.0
839,077 + Psyr_0733 0.82 -0.9
839,077 + Psyr_0733 0.82 +3.7
839,077 + Psyr_0733 0.82 -0.8
839,077 + Psyr_0733 0.82 +0.0
839,077 + Psyr_0733 0.82 -1.4
839,077 + Psyr_0733 0.82 -3.5
839,077 + Psyr_0733 0.82 +2.8

Or see this region's nucleotide sequence