Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0726

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0725 and Psyr_0726 are separated by 149 nucleotidesPsyr_0726 and Psyr_0727 overlap by 4 nucleotidesPsyr_0727 and Psyr_0728 are separated by 171 nucleotides Psyr_0725: Psyr_0725 - competence lipoprotein ComL, putative, at 829,295 to 830,317 _0725 Psyr_0726: Psyr_0726 - ribosomal large subunit pseudouridine synthase D, at 830,467 to 831,429 _0726 Psyr_0727: Psyr_0727 - Protein of unknown function DUF152, at 831,426 to 832,154 _0727 Psyr_0728: Psyr_0728 - AAA ATPase, central region:Clp, N terminal:Clp, N terminal, at 832,326 to 834,890 _0728 Position (kb) 830 831 832Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 829.599 kb on + strand, within Psyr_0725at 830.370 kb on - strandat 830.370 kb on - strandat 830.412 kb on - strandat 830.457 kb on + strandat 830.457 kb on + strandat 830.457 kb on + strandat 830.458 kb on - strandat 830.458 kb on - strandat 830.458 kb on - strandat 830.458 kb on - strandat 830.458 kb on - strandat 830.479 kb on - strandat 830.479 kb on - strandat 830.480 kb on + strandat 830.481 kb on - strandat 830.481 kb on - strandat 830.481 kb on - strandat 830.546 kb on + strandat 830.546 kb on + strandat 830.547 kb on - strandat 830.726 kb on - strand, within Psyr_0726at 830.970 kb on + strand, within Psyr_0726at 830.970 kb on + strand, within Psyr_0726at 830.971 kb on - strand, within Psyr_0726at 830.971 kb on - strand, within Psyr_0726at 830.974 kb on + strand, within Psyr_0726at 830.974 kb on + strand, within Psyr_0726at 830.974 kb on + strand, within Psyr_0726at 830.974 kb on + strand, within Psyr_0726at 830.975 kb on - strand, within Psyr_0726at 830.975 kb on - strand, within Psyr_0726at 830.975 kb on - strand, within Psyr_0726at 830.975 kb on - strand, within Psyr_0726at 831.134 kb on + strand, within Psyr_0726at 831.134 kb on + strand, within Psyr_0726at 831.135 kb on - strand, within Psyr_0726at 831.135 kb on - strand, within Psyr_0726at 831.135 kb on - strand, within Psyr_0726at 831.176 kb on + strand, within Psyr_0726at 831.442 kb on + strandat 831.442 kb on + strandat 831.442 kb on + strandat 831.442 kb on + strandat 831.442 kb on + strandat 831.638 kb on - strand, within Psyr_0727at 831.638 kb on - strand, within Psyr_0727at 831.646 kb on + strand, within Psyr_0727at 831.646 kb on + strand, within Psyr_0727at 831.646 kb on + strand, within Psyr_0727at 831.647 kb on - strand, within Psyr_0727at 831.647 kb on - strand, within Psyr_0727at 831.718 kb on + strand, within Psyr_0727at 831.719 kb on - strand, within Psyr_0727at 831.719 kb on - strand, within Psyr_0727at 831.719 kb on - strand, within Psyr_0727at 831.719 kb on - strand, within Psyr_0727at 832.002 kb on + strand, within Psyr_0727at 832.002 kb on + strand, within Psyr_0727at 832.002 kb on + strand, within Psyr_0727at 832.002 kb on + strand, within Psyr_0727at 832.002 kb on + strand, within Psyr_0727at 832.003 kb on - strand, within Psyr_0727at 832.003 kb on - strand, within Psyr_0727at 832.003 kb on - strand, within Psyr_0727at 832.003 kb on - strand, within Psyr_0727at 832.003 kb on - strand, within Psyr_0727at 832.037 kb on + strand, within Psyr_0727at 832.038 kb on - strand, within Psyr_0727at 832.038 kb on - strand, within Psyr_0727at 832.038 kb on - strand, within Psyr_0727at 832.038 kb on - strand, within Psyr_0727at 832.182 kb on + strandat 832.182 kb on + strandat 832.183 kb on - strandat 832.212 kb on - strandat 832.212 kb on - strandat 832.254 kb on + strandat 832.254 kb on + strandat 832.254 kb on + strandat 832.254 kb on + strandat 832.254 kb on + strandat 832.255 kb on - strandat 832.255 kb on - strandat 832.255 kb on - strandat 832.282 kb on + strandat 832.282 kb on + strandat 832.282 kb on + strandat 832.282 kb on + strandat 832.282 kb on + strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.310 kb on + strandat 832.350 kb on - strandat 832.354 kb on + strandat 832.354 kb on + strandat 832.354 kb on + strandat 832.355 kb on - strandat 832.355 kb on - strandat 832.360 kb on + strandat 832.361 kb on - strandat 832.361 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
829,599 + Psyr_0725 0.30 -0.0
830,370 - +4.0
830,370 - +1.1
830,412 - -1.7
830,457 + -3.7
830,457 + -1.2
830,457 + -0.6
830,458 - +5.1
830,458 - +2.3
830,458 - +3.6
830,458 - +5.0
830,458 - +2.6
830,479 - +2.6
830,479 - +1.9
830,480 + +2.0
830,481 - +4.8
830,481 - +5.7
830,481 - +5.7
830,546 + +0.5
830,546 + -1.0
830,547 - +3.2
830,726 - Psyr_0726 0.27 +5.4
830,970 + Psyr_0726 0.52 -0.0
830,970 + Psyr_0726 0.52 +3.6
830,971 - Psyr_0726 0.52 +5.9
830,971 - Psyr_0726 0.52 +0.4
830,974 + Psyr_0726 0.53 +4.6
830,974 + Psyr_0726 0.53 -0.2
830,974 + Psyr_0726 0.53 +4.1
830,974 + Psyr_0726 0.53 +1.6
830,975 - Psyr_0726 0.53 +4.2
830,975 - Psyr_0726 0.53 +5.5
830,975 - Psyr_0726 0.53 +1.8
830,975 - Psyr_0726 0.53 +4.8
831,134 + Psyr_0726 0.69 +1.9
831,134 + Psyr_0726 0.69 +6.7
831,135 - Psyr_0726 0.69 +0.5
831,135 - Psyr_0726 0.69 +1.3
831,135 - Psyr_0726 0.69 +2.9
831,176 + Psyr_0726 0.74 +6.2
831,442 + -1.5
831,442 + -0.3
831,442 + -1.1
831,442 + -0.3
831,442 + -0.0
831,638 - Psyr_0727 0.29 -0.0
831,638 - Psyr_0727 0.29 -1.0
831,646 + Psyr_0727 0.30 +1.4
831,646 + Psyr_0727 0.30 -0.9
831,646 + Psyr_0727 0.30 +0.7
831,647 - Psyr_0727 0.30 +3.5
831,647 - Psyr_0727 0.30 -1.1
831,718 + Psyr_0727 0.40 +0.8
831,719 - Psyr_0727 0.40 +1.2
831,719 - Psyr_0727 0.40 +0.3
831,719 - Psyr_0727 0.40 -2.0
831,719 - Psyr_0727 0.40 -1.3
832,002 + Psyr_0727 0.79 -1.9
832,002 + Psyr_0727 0.79 -0.0
832,002 + Psyr_0727 0.79 -1.0
832,002 + Psyr_0727 0.79 +3.3
832,002 + Psyr_0727 0.79 -0.0
832,003 - Psyr_0727 0.79 +0.1
832,003 - Psyr_0727 0.79 +0.1
832,003 - Psyr_0727 0.79 -0.3
832,003 - Psyr_0727 0.79 +4.9
832,003 - Psyr_0727 0.79 +2.3
832,037 + Psyr_0727 0.84 -1.3
832,038 - Psyr_0727 0.84 -0.9
832,038 - Psyr_0727 0.84 +1.6
832,038 - Psyr_0727 0.84 +1.6
832,038 - Psyr_0727 0.84 -2.0
832,182 + -2.0
832,182 + -4.4
832,183 - -2.5
832,212 - +1.6
832,212 - -4.2
832,254 + +0.1
832,254 + +0.5
832,254 + +0.9
832,254 + -1.0
832,254 + -2.4
832,255 - +1.4
832,255 - -2.7
832,255 - +3.2
832,282 + -1.1
832,282 + -3.6
832,282 + -2.8
832,282 + -1.1
832,282 + -2.2
832,283 - -0.9
832,283 - -3.0
832,283 - +2.3
832,283 - -1.5
832,283 - -2.7
832,283 - +1.0
832,283 - -4.3
832,310 + -0.8
832,350 - +1.0
832,354 + -1.3
832,354 + -0.7
832,354 + -1.1
832,355 - +4.8
832,355 - +1.6
832,360 + -3.2
832,361 - -1.7
832,361 - +0.1

Or see this region's nucleotide sequence