Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0681

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0680 and Psyr_0681 overlap by 4 nucleotidesPsyr_0681 and Psyr_0682 overlap by 4 nucleotides Psyr_0680: Psyr_0680 - DNA helicase/exodeoxyribonuclease V, gamma subunit, at 777,540 to 781,013 _0680 Psyr_0681: Psyr_0681 - DNA helicase/exodeoxyribonuclease V, beta subunit, at 781,010 to 784,702 _0681 Psyr_0682: Psyr_0682 - DNA helicase/exodeoxyribonuclease V, alpha subunit, at 784,699 to 786,792 _0682 Position (kb) 781 782 783 784 785Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 780.156 kb on + strand, within Psyr_0680at 780.156 kb on + strand, within Psyr_0680at 781.743 kb on - strand, within Psyr_0681at 783.321 kb on - strand, within Psyr_0681at 784.479 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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780,156 + Psyr_0680 0.75 -1.7
780,156 + Psyr_0680 0.75 -2.6
781,743 - Psyr_0681 0.20 -5.7
783,321 - Psyr_0681 0.63 -0.0
784,479 - -0.0

Or see this region's nucleotide sequence