Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0590 and Psyr_0591 are separated by 152 nucleotides Psyr_0591 and Psyr_0592 are separated by 77 nucleotides Psyr_0592 and Psyr_0593 overlap by 1 nucleotides
Psyr_0590: Psyr_0590 - Transglutaminase-like protein, at 678,987 to 679,880
_0590
Psyr_0591: Psyr_0591 - Blue (type 1) copper domain protein, at 680,033 to 680,479
_0591
Psyr_0592: Psyr_0592 - Integrase, catalytic region, at 680,557 to 681,393
_0592
Psyr_0593: Psyr_0593 - ISPsy9, transposase OrfA, at 681,393 to 681,932
_0593
Position (kb) 680
681 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.309 kb on - strand, within Psyr_0590 at 679.309 kb on - strand, within Psyr_0590 at 679.447 kb on + strand, within Psyr_0590 at 679.448 kb on - strand, within Psyr_0590 at 679.611 kb on + strand, within Psyr_0590 at 679.612 kb on - strand, within Psyr_0590 at 679.696 kb on + strand, within Psyr_0590 at 679.697 kb on - strand, within Psyr_0590 at 679.878 kb on + strand at 679.878 kb on + strand at 679.882 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 680.001 kb on + strand at 680.001 kb on + strand at 680.002 kb on - strand at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.230 kb on + strand, within Psyr_0591 at 680.231 kb on - strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.307 kb on - strand, within Psyr_0591 at 680.307 kb on - strand, within Psyr_0591 at 680.414 kb on + strand, within Psyr_0591 at 680.415 kb on - strand, within Psyr_0591 at 680.477 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 679,308 + Psyr_0590 0.36 +3.9 679,308 + Psyr_0590 0.36 +0.8 679,308 + Psyr_0590 0.36 -3.7 679,308 + Psyr_0590 0.36 -0.7 679,308 + Psyr_0590 0.36 +0.9 679,308 + Psyr_0590 0.36 -0.2 679,309 - Psyr_0590 0.36 -2.3 679,309 - Psyr_0590 0.36 +3.5 679,447 + Psyr_0590 0.51 -2.2 679,448 - Psyr_0590 0.52 -0.1 679,611 + Psyr_0590 0.70 +1.9 679,612 - Psyr_0590 0.70 -1.9 679,696 + Psyr_0590 0.79 -0.1 679,697 - Psyr_0590 0.79 -0.7 679,878 + -0.8 679,878 + +3.1 679,882 + +1.9 679,990 + +3.3 679,990 + -2.5 679,990 + +3.1 679,990 + -2.5 679,990 + +1.5 679,990 + -1.1 679,990 + +4.5 679,990 + +1.5 679,990 + -1.5 679,990 + +0.3 679,990 + -1.2 679,991 - -1.7 679,991 - +1.5 679,991 - +3.8 679,991 - +0.7 679,991 - +2.5 679,991 - -0.5 679,991 - -0.4 679,991 - -2.1 679,991 - -0.1 680,001 + +1.8 680,001 + +2.8 680,002 - -0.1 680,135 + Psyr_0591 0.23 +4.3 680,135 + Psyr_0591 0.23 -2.5 680,135 + Psyr_0591 0.23 +0.9 680,135 + Psyr_0591 0.23 +1.9 680,135 + Psyr_0591 0.23 -1.2 680,135 + Psyr_0591 0.23 +0.4 680,135 + Psyr_0591 0.23 +2.3 680,136 - Psyr_0591 0.23 +0.8 680,136 - Psyr_0591 0.23 +1.4 680,136 - Psyr_0591 0.23 -2.8 680,136 - Psyr_0591 0.23 -2.9 680,136 - Psyr_0591 0.23 +0.9 680,136 - Psyr_0591 0.23 +0.9 680,136 - Psyr_0591 0.23 -0.1 680,136 - Psyr_0591 0.23 -1.5 680,136 - Psyr_0591 0.23 +1.5 680,230 + Psyr_0591 0.44 -1.1 680,231 - Psyr_0591 0.44 +0.1 680,306 + Psyr_0591 0.61 -0.5 680,306 + Psyr_0591 0.61 +0.3 680,306 + Psyr_0591 0.61 -4.4 680,306 + Psyr_0591 0.61 +0.9 680,307 - Psyr_0591 0.61 +0.4 680,307 - Psyr_0591 0.61 +4.7 680,414 + Psyr_0591 0.85 -0.8 680,415 - Psyr_0591 0.85 -0.1 680,477 + +0.7
Or see this region's nucleotide sequence