Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0532 and Psyr_0533 are separated by 31 nucleotides Psyr_0533 and Psyr_0534 overlap by 11 nucleotides Psyr_0534 and Psyr_0535 are separated by 48 nucleotides Psyr_0535 and Psyr_0536 overlap by 2 nucleotides
Psyr_0532: Psyr_0532 - conserved hypothetical protein, at 601,182 to 602,138
_0532
Psyr_0533: Psyr_0533 - conserved hypothetical protein, at 602,170 to 602,943
_0533
Psyr_0534: Psyr_0534 - membrane protein, putative, at 602,933 to 604,102
_0534
Psyr_0535: Psyr_0535 - toluene tolerance protein, putative, at 604,151 to 604,906
_0535
Psyr_0536: Psyr_0536 - ABC transporter, transmembrane region:ABC transporter, at 604,905 to 606,707
_0536
Position (kb) 602
603
604
605 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 602.000 kb on + strand, within Psyr_0532 at 602.030 kb on + strand, within Psyr_0532 at 602.144 kb on + strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.177 kb on + strand at 602.177 kb on + strand at 602.199 kb on + strand at 602.416 kb on + strand, within Psyr_0533 at 602.417 kb on - strand, within Psyr_0533 at 602.417 kb on - strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.549 kb on - strand, within Psyr_0533 at 602.549 kb on - strand, within Psyr_0533 at 602.579 kb on - strand, within Psyr_0533 at 602.579 kb on - strand, within Psyr_0533 at 602.696 kb on - strand, within Psyr_0533 at 602.696 kb on - strand, within Psyr_0533 at 602.750 kb on + strand, within Psyr_0533 at 602.751 kb on - strand, within Psyr_0533 at 602.910 kb on - strand at 602.910 kb on - strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.913 kb on - strand at 602.913 kb on - strand at 602.929 kb on - strand at 602.929 kb on - strand at 602.929 kb on - strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.932 kb on - strand at 602.932 kb on - strand at 602.949 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 603.056 kb on + strand, within Psyr_0534 at 603.056 kb on + strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.198 kb on - strand, within Psyr_0534 at 603.200 kb on + strand, within Psyr_0534 at 603.200 kb on + strand, within Psyr_0534 at 603.200 kb on + strand, within Psyr_0534 at 603.200 kb on + strand, within Psyr_0534 at 603.200 kb on + strand, within Psyr_0534 at 603.200 kb on + strand, within Psyr_0534 at 603.201 kb on - strand, within Psyr_0534 at 603.201 kb on - strand, within Psyr_0534 at 603.201 kb on - strand, within Psyr_0534 at 603.201 kb on - strand, within Psyr_0534 at 603.201 kb on - strand, within Psyr_0534 at 603.201 kb on - strand, within Psyr_0534 at 603.201 kb on - strand, within Psyr_0534 at 603.215 kb on + strand, within Psyr_0534 at 603.215 kb on + strand, within Psyr_0534 at 603.215 kb on + strand, within Psyr_0534 at 603.215 kb on + strand, within Psyr_0534 at 603.215 kb on + strand, within Psyr_0534 at 603.215 kb on + strand, within Psyr_0534 at 603.215 kb on + strand, within Psyr_0534 at 603.216 kb on - strand, within Psyr_0534 at 603.216 kb on - strand, within Psyr_0534 at 603.216 kb on - strand, within Psyr_0534 at 603.216 kb on - strand, within Psyr_0534 at 603.216 kb on - strand, within Psyr_0534 at 603.216 kb on - strand, within Psyr_0534 at 603.216 kb on - strand, within Psyr_0534 at 603.306 kb on + strand, within Psyr_0534 at 603.306 kb on + strand, within Psyr_0534 at 603.306 kb on + strand, within Psyr_0534 at 603.306 kb on + strand, within Psyr_0534 at 603.306 kb on + strand, within Psyr_0534 at 603.307 kb on - strand, within Psyr_0534 at 603.307 kb on - strand, within Psyr_0534 at 603.307 kb on - strand, within Psyr_0534 at 603.307 kb on - strand, within Psyr_0534 at 603.307 kb on - strand, within Psyr_0534 at 603.307 kb on - strand, within Psyr_0534 at 603.314 kb on + strand, within Psyr_0534 at 603.314 kb on + strand, within Psyr_0534 at 603.314 kb on + strand, within Psyr_0534 at 603.314 kb on + strand, within Psyr_0534 at 603.314 kb on + strand, within Psyr_0534 at 603.314 kb on + strand, within Psyr_0534 at 603.314 kb on + strand, within Psyr_0534 at 603.314 kb on + strand, within Psyr_0534 at 603.314 kb on + strand, within Psyr_0534 at 603.315 kb on - strand, within Psyr_0534 at 603.315 kb on - strand, within Psyr_0534 at 603.315 kb on - strand, within Psyr_0534 at 603.315 kb on - strand, within Psyr_0534 at 603.315 kb on - strand, within Psyr_0534 at 603.315 kb on - strand, within Psyr_0534 at 603.315 kb on - strand, within Psyr_0534 at 603.315 kb on - strand, within Psyr_0534 at 603.410 kb on + strand, within Psyr_0534 at 603.410 kb on + strand, within Psyr_0534 at 603.411 kb on - strand, within Psyr_0534 at 603.411 kb on - strand, within Psyr_0534 at 603.411 kb on - strand, within Psyr_0534 at 603.411 kb on - strand, within Psyr_0534 at 603.542 kb on - strand, within Psyr_0534 at 603.794 kb on + strand, within Psyr_0534 at 603.794 kb on + strand, within Psyr_0534 at 603.794 kb on + strand, within Psyr_0534 at 603.795 kb on - strand, within Psyr_0534 at 603.795 kb on - strand, within Psyr_0534 at 603.795 kb on - strand, within Psyr_0534 at 603.795 kb on - strand, within Psyr_0534 at 603.795 kb on - strand, within Psyr_0534 at 603.844 kb on + strand, within Psyr_0534 at 603.844 kb on + strand, within Psyr_0534 at 603.866 kb on + strand, within Psyr_0534 at 603.867 kb on - strand, within Psyr_0534 at 603.867 kb on - strand, within Psyr_0534 at 603.867 kb on - strand, within Psyr_0534 at 603.867 kb on - strand, within Psyr_0534 at 603.867 kb on - strand, within Psyr_0534 at 603.867 kb on - strand, within Psyr_0534 at 603.867 kb on - strand, within Psyr_0534 at 603.957 kb on - strand, within Psyr_0534 at 603.957 kb on - strand, within Psyr_0534 at 603.982 kb on + strand, within Psyr_0534 at 603.982 kb on + strand, within Psyr_0534 at 603.982 kb on + strand, within Psyr_0534 at 603.982 kb on + strand, within Psyr_0534 at 604.101 kb on - strand at 604.101 kb on - strand at 604.101 kb on - strand at 604.206 kb on + strand at 604.206 kb on + strand at 604.206 kb on + strand at 604.404 kb on + strand, within Psyr_0535 at 604.404 kb on + strand, within Psyr_0535 at 604.404 kb on + strand, within Psyr_0535 at 604.518 kb on + strand, within Psyr_0535 at 604.518 kb on + strand, within Psyr_0535 at 604.523 kb on + strand, within Psyr_0535 at 604.565 kb on + strand, within Psyr_0535 at 604.706 kb on + strand, within Psyr_0535 at 604.736 kb on + strand, within Psyr_0535 at 604.832 kb on + strand at 604.870 kb on + strand at 604.870 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 602,000 + Psyr_0532 0.85 +4.3 602,030 + Psyr_0532 0.89 +3.7 602,144 + -0.5 602,151 - -2.4 602,151 - +2.7 602,151 - -2.0 602,177 + -1.8 602,177 + -0.1 602,199 + +0.9 602,416 + Psyr_0533 0.32 -0.1 602,417 - Psyr_0533 0.32 +0.2 602,417 - Psyr_0533 0.32 +3.3 602,548 + Psyr_0533 0.49 +3.5 602,548 + Psyr_0533 0.49 +2.5 602,548 + Psyr_0533 0.49 +0.9 602,548 + Psyr_0533 0.49 -1.6 602,549 - Psyr_0533 0.49 +1.5 602,549 - Psyr_0533 0.49 +2.3 602,579 - Psyr_0533 0.53 +5.0 602,579 - Psyr_0533 0.53 -0.1 602,696 - Psyr_0533 0.68 -1.4 602,696 - Psyr_0533 0.68 -1.1 602,750 + Psyr_0533 0.75 +3.1 602,751 - Psyr_0533 0.75 +3.9 602,910 - -0.4 602,910 - +4.5 602,912 + +3.5 602,912 + -0.1 602,912 + +3.3 602,912 + +3.4 602,913 - +0.2 602,913 - -1.2 602,929 - -2.6 602,929 - -0.9 602,929 - +2.7 602,931 + -2.5 602,931 + -0.1 602,931 + -4.4 602,932 - -0.1 602,932 - -0.1 602,949 + -0.8 602,970 + +0.9 602,970 + +1.5 602,970 + -1.4 602,970 + +3.7 602,970 + -0.1 602,970 + -0.8 602,971 - -1.4 602,971 - -0.6 602,971 - -1.3 602,971 - +2.5 602,971 - -0.6 602,971 - +2.7 602,971 - +0.2 602,971 - -1.2 602,971 - +0.9 602,971 - +2.3 602,971 - +1.9 602,978 + -0.1 602,978 + +0.9 602,978 + -1.7 602,978 + -4.5 602,978 + -4.0 602,978 + +3.3 602,978 + -5.2 602,979 - -2.2 602,979 - +1.5 602,979 - -1.3 602,979 - -2.1 602,979 - +1.2 602,979 - -2.0 603,056 + Psyr_0534 0.11 +1.2 603,056 + Psyr_0534 0.11 +1.9 603,057 - Psyr_0534 0.11 -1.5 603,057 - Psyr_0534 0.11 -0.3 603,057 - Psyr_0534 0.11 -0.1 603,057 - Psyr_0534 0.11 -2.5 603,198 - Psyr_0534 0.23 -0.2 603,200 + Psyr_0534 0.23 +1.8 603,200 + Psyr_0534 0.23 +3.9 603,200 + Psyr_0534 0.23 +1.0 603,200 + Psyr_0534 0.23 -0.7 603,200 + Psyr_0534 0.23 +0.5 603,200 + Psyr_0534 0.23 +1.0 603,201 - Psyr_0534 0.23 -0.1 603,201 - Psyr_0534 0.23 +2.6 603,201 - Psyr_0534 0.23 -0.1 603,201 - Psyr_0534 0.23 +1.8 603,201 - Psyr_0534 0.23 +3.3 603,201 - Psyr_0534 0.23 -0.1 603,201 - Psyr_0534 0.23 +3.5 603,215 + Psyr_0534 0.24 -0.7 603,215 + Psyr_0534 0.24 +1.8 603,215 + Psyr_0534 0.24 +0.7 603,215 + Psyr_0534 0.24 +1.9 603,215 + Psyr_0534 0.24 +1.8 603,215 + Psyr_0534 0.24 +2.4 603,215 + Psyr_0534 0.24 +1.5 603,216 - Psyr_0534 0.24 -0.2 603,216 - Psyr_0534 0.24 -1.9 603,216 - Psyr_0534 0.24 -0.1 603,216 - Psyr_0534 0.24 +0.3 603,216 - Psyr_0534 0.24 -0.8 603,216 - Psyr_0534 0.24 +2.9 603,216 - Psyr_0534 0.24 +4.9 603,306 + Psyr_0534 0.32 +3.5 603,306 + Psyr_0534 0.32 +1.2 603,306 + Psyr_0534 0.32 -0.2 603,306 + Psyr_0534 0.32 -1.3 603,306 + Psyr_0534 0.32 +1.8 603,307 - Psyr_0534 0.32 +2.2 603,307 - Psyr_0534 0.32 +3.6 603,307 - Psyr_0534 0.32 +0.9 603,307 - Psyr_0534 0.32 +1.2 603,307 - Psyr_0534 0.32 +1.2 603,307 - Psyr_0534 0.32 +2.7 603,314 + Psyr_0534 0.33 -0.0 603,314 + Psyr_0534 0.33 +1.1 603,314 + Psyr_0534 0.33 +3.3 603,314 + Psyr_0534 0.33 -0.1 603,314 + Psyr_0534 0.33 +4.1 603,314 + Psyr_0534 0.33 -0.5 603,314 + Psyr_0534 0.33 +0.3 603,314 + Psyr_0534 0.33 +1.1 603,314 + Psyr_0534 0.33 +3.7 603,315 - Psyr_0534 0.33 -5.4 603,315 - Psyr_0534 0.33 -0.3 603,315 - Psyr_0534 0.33 +3.4 603,315 - Psyr_0534 0.33 +1.1 603,315 - Psyr_0534 0.33 -1.3 603,315 - Psyr_0534 0.33 +0.6 603,315 - Psyr_0534 0.33 +0.4 603,315 - Psyr_0534 0.33 -0.0 603,410 + Psyr_0534 0.41 +1.7 603,410 + Psyr_0534 0.41 +1.8 603,411 - Psyr_0534 0.41 -4.1 603,411 - Psyr_0534 0.41 -0.2 603,411 - Psyr_0534 0.41 +4.2 603,411 - Psyr_0534 0.41 +0.4 603,542 - Psyr_0534 0.52 -1.2 603,794 + Psyr_0534 0.74 +5.1 603,794 + Psyr_0534 0.74 +5.6 603,794 + Psyr_0534 0.74 -1.6 603,795 - Psyr_0534 0.74 +4.5 603,795 - Psyr_0534 0.74 -0.3 603,795 - Psyr_0534 0.74 -0.8 603,795 - Psyr_0534 0.74 -0.0 603,795 - Psyr_0534 0.74 +0.1 603,844 + Psyr_0534 0.78 +4.6 603,844 + Psyr_0534 0.78 +0.5 603,866 + Psyr_0534 0.80 +1.9 603,867 - Psyr_0534 0.80 -1.9 603,867 - Psyr_0534 0.80 +1.7 603,867 - Psyr_0534 0.80 +2.7 603,867 - Psyr_0534 0.80 -0.9 603,867 - Psyr_0534 0.80 +2.7 603,867 - Psyr_0534 0.80 -1.7 603,867 - Psyr_0534 0.80 -0.1 603,957 - Psyr_0534 0.88 -2.6 603,957 - Psyr_0534 0.88 +4.3 603,982 + Psyr_0534 0.90 +1.9 603,982 + Psyr_0534 0.90 -1.5 603,982 + Psyr_0534 0.90 +3.7 603,982 + Psyr_0534 0.90 +2.1 604,101 - -3.6 604,101 - -1.7 604,101 - -2.5 604,206 + -4.1 604,206 + -0.1 604,206 + -0.1 604,404 + Psyr_0535 0.33 -0.1 604,404 + Psyr_0535 0.33 -0.1 604,404 + Psyr_0535 0.33 -4.8 604,518 + Psyr_0535 0.49 -3.9 604,518 + Psyr_0535 0.49 -1.2 604,523 + Psyr_0535 0.49 -4.3 604,565 + Psyr_0535 0.55 -0.1 604,706 + Psyr_0535 0.73 -0.1 604,736 + Psyr_0535 0.77 -0.1 604,832 + -0.1 604,870 + -3.5 604,870 + +0.9
Or see this region's nucleotide sequence