Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0507 and Psyr_0508 are separated by 83 nucleotides Psyr_0508 and Psyr_0509 are separated by 296 nucleotides
Psyr_0507: Psyr_0507 - Na+/solute symporter, at 562,015 to 563,574
_0507
Psyr_0508: Psyr_0508 - lyase, putative, at 563,658 to 564,329
_0508
Psyr_0509: Psyr_0509 - PAS:GGDEF, at 564,626 to 566,785
_0509
Position (kb) 563
564
565 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 562.828 kb on + strand, within Psyr_0507 at 562.829 kb on - strand, within Psyr_0507 at 562.845 kb on + strand, within Psyr_0507 at 562.846 kb on - strand, within Psyr_0507 at 562.969 kb on + strand, within Psyr_0507 at 563.107 kb on - strand, within Psyr_0507 at 563.107 kb on - strand, within Psyr_0507 at 563.158 kb on + strand, within Psyr_0507 at 563.158 kb on + strand, within Psyr_0507 at 563.158 kb on + strand, within Psyr_0507 at 563.159 kb on - strand, within Psyr_0507 at 563.159 kb on - strand, within Psyr_0507 at 563.159 kb on - strand, within Psyr_0507 at 563.159 kb on - strand, within Psyr_0507 at 563.167 kb on + strand, within Psyr_0507 at 563.167 kb on + strand, within Psyr_0507 at 563.167 kb on + strand, within Psyr_0507 at 563.207 kb on + strand, within Psyr_0507 at 563.443 kb on + strand at 563.444 kb on - strand at 563.633 kb on - strand at 563.633 kb on - strand at 563.689 kb on + strand at 563.689 kb on + strand at 563.689 kb on + strand at 563.690 kb on - strand at 563.690 kb on - strand at 563.690 kb on - strand at 563.740 kb on + strand, within Psyr_0508 at 563.740 kb on + strand, within Psyr_0508 at 563.740 kb on + strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.758 kb on + strand, within Psyr_0508 at 563.759 kb on - strand, within Psyr_0508 at 563.759 kb on - strand, within Psyr_0508 at 563.759 kb on - strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.890 kb on - strand, within Psyr_0508 at 563.890 kb on - strand, within Psyr_0508 at 563.900 kb on - strand, within Psyr_0508 at 563.974 kb on + strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 564.013 kb on + strand, within Psyr_0508 at 564.014 kb on - strand, within Psyr_0508 at 564.014 kb on - strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.022 kb on - strand, within Psyr_0508 at 564.022 kb on - strand, within Psyr_0508 at 564.022 kb on - strand, within Psyr_0508 at 564.054 kb on + strand, within Psyr_0508 at 564.054 kb on + strand, within Psyr_0508 at 564.055 kb on - strand, within Psyr_0508 at 564.055 kb on - strand, within Psyr_0508 at 564.055 kb on - strand, within Psyr_0508 at 564.113 kb on + strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.160 kb on + strand, within Psyr_0508 at 564.160 kb on + strand, within Psyr_0508 at 564.160 kb on + strand, within Psyr_0508 at 564.179 kb on + strand, within Psyr_0508 at 564.232 kb on + strand, within Psyr_0508 at 564.233 kb on - strand, within Psyr_0508 at 564.233 kb on - strand, within Psyr_0508 at 564.233 kb on - strand, within Psyr_0508 at 564.236 kb on + strand, within Psyr_0508 at 564.236 kb on + strand, within Psyr_0508 at 564.245 kb on - strand, within Psyr_0508 at 564.252 kb on + strand, within Psyr_0508 at 564.252 kb on + strand, within Psyr_0508 at 564.253 kb on - strand, within Psyr_0508 at 564.253 kb on - strand, within Psyr_0508 at 564.253 kb on - strand, within Psyr_0508 at 564.255 kb on + strand, within Psyr_0508 at 564.255 kb on + strand, within Psyr_0508 at 564.256 kb on - strand, within Psyr_0508 at 564.256 kb on - strand, within Psyr_0508 at 564.256 kb on - strand, within Psyr_0508 at 564.324 kb on + strand at 564.356 kb on + strand at 564.356 kb on + strand at 564.356 kb on + strand at 564.357 kb on - strand at 564.402 kb on + strand at 564.402 kb on + strand at 564.403 kb on - strand at 564.597 kb on + strand at 564.597 kb on + strand at 564.597 kb on + strand at 564.597 kb on + strand at 564.598 kb on - strand at 564.598 kb on - strand at 564.690 kb on + strand at 564.691 kb on - strand at 564.699 kb on + strand at 564.783 kb on + strand at 564.784 kb on - strand at 564.798 kb on + strand at 564.799 kb on - strand at 564.963 kb on - strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 565.197 kb on + strand, within Psyr_0509 at 565.197 kb on + strand, within Psyr_0509 at 565.198 kb on - strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.263 kb on + strand, within Psyr_0509 at 565.263 kb on + strand, within Psyr_0509 at 565.263 kb on + strand, within Psyr_0509 at 565.264 kb on - strand, within Psyr_0509 at 565.289 kb on + strand, within Psyr_0509 at 565.290 kb on - strand, within Psyr_0509 at 565.317 kb on - strand, within Psyr_0509 at 565.317 kb on - strand, within Psyr_0509
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 562,828 + Psyr_0507 0.52 +2.3 562,829 - Psyr_0507 0.52 -1.0 562,845 + Psyr_0507 0.53 -3.6 562,846 - Psyr_0507 0.53 +3.5 562,969 + Psyr_0507 0.61 -1.6 563,107 - Psyr_0507 0.70 -1.1 563,107 - Psyr_0507 0.70 +2.3 563,158 + Psyr_0507 0.73 +3.1 563,158 + Psyr_0507 0.73 -1.4 563,158 + Psyr_0507 0.73 +4.8 563,159 - Psyr_0507 0.73 -1.5 563,159 - Psyr_0507 0.73 +1.5 563,159 - Psyr_0507 0.73 +3.7 563,159 - Psyr_0507 0.73 +2.9 563,167 + Psyr_0507 0.74 -0.8 563,167 + Psyr_0507 0.74 -3.5 563,167 + Psyr_0507 0.74 -1.4 563,207 + Psyr_0507 0.76 -1.4 563,443 + +0.1 563,444 - -1.6 563,633 - -0.1 563,633 - +0.9 563,689 + +0.3 563,689 + -2.4 563,689 + -2.1 563,690 - -1.3 563,690 - -0.7 563,690 - +1.9 563,740 + Psyr_0508 0.12 -1.1 563,740 + Psyr_0508 0.12 -4.5 563,740 + Psyr_0508 0.12 -0.9 563,741 - Psyr_0508 0.12 -0.1 563,741 - Psyr_0508 0.12 +2.3 563,741 - Psyr_0508 0.12 +1.5 563,741 - Psyr_0508 0.12 -1.3 563,741 - Psyr_0508 0.12 -1.7 563,741 - Psyr_0508 0.12 -4.6 563,741 - Psyr_0508 0.12 +4.6 563,758 + Psyr_0508 0.15 +0.5 563,759 - Psyr_0508 0.15 +0.9 563,759 - Psyr_0508 0.15 +0.5 563,759 - Psyr_0508 0.15 +1.5 563,857 + Psyr_0508 0.30 -1.0 563,857 + Psyr_0508 0.30 +1.9 563,857 + Psyr_0508 0.30 -3.2 563,857 + Psyr_0508 0.30 +0.9 563,858 - Psyr_0508 0.30 -1.1 563,858 - Psyr_0508 0.30 +2.3 563,858 - Psyr_0508 0.30 +3.7 563,858 - Psyr_0508 0.30 +3.4 563,890 - Psyr_0508 0.35 +0.5 563,890 - Psyr_0508 0.35 +4.2 563,900 - Psyr_0508 0.36 -1.2 563,974 + Psyr_0508 0.47 -0.8 563,975 - Psyr_0508 0.47 +0.4 563,975 - Psyr_0508 0.47 -3.3 563,975 - Psyr_0508 0.47 -1.2 563,975 - Psyr_0508 0.47 +2.7 564,013 + Psyr_0508 0.53 -0.6 564,014 - Psyr_0508 0.53 +0.0 564,014 - Psyr_0508 0.53 -1.5 564,021 + Psyr_0508 0.54 -0.6 564,021 + Psyr_0508 0.54 +2.9 564,021 + Psyr_0508 0.54 +1.9 564,021 + Psyr_0508 0.54 -1.4 564,021 + Psyr_0508 0.54 -1.5 564,021 + Psyr_0508 0.54 -0.4 564,021 + Psyr_0508 0.54 +0.9 564,021 + Psyr_0508 0.54 -2.3 564,022 - Psyr_0508 0.54 -1.1 564,022 - Psyr_0508 0.54 +1.3 564,022 - Psyr_0508 0.54 +0.0 564,054 + Psyr_0508 0.59 +3.6 564,054 + Psyr_0508 0.59 +1.9 564,055 - Psyr_0508 0.59 +2.5 564,055 - Psyr_0508 0.59 -0.7 564,055 - Psyr_0508 0.59 +0.5 564,113 + Psyr_0508 0.68 -2.1 564,114 - Psyr_0508 0.68 -0.2 564,114 - Psyr_0508 0.68 -0.9 564,114 - Psyr_0508 0.68 -0.1 564,114 - Psyr_0508 0.68 +1.4 564,114 - Psyr_0508 0.68 +2.3 564,114 - Psyr_0508 0.68 -0.3 564,114 - Psyr_0508 0.68 +0.3 564,114 - Psyr_0508 0.68 -1.3 564,160 + Psyr_0508 0.75 -1.7 564,160 + Psyr_0508 0.75 -1.3 564,160 + Psyr_0508 0.75 -3.7 564,179 + Psyr_0508 0.78 +3.7 564,232 + Psyr_0508 0.85 +3.9 564,233 - Psyr_0508 0.86 -0.9 564,233 - Psyr_0508 0.86 -1.5 564,233 - Psyr_0508 0.86 +2.3 564,236 + Psyr_0508 0.86 -1.7 564,236 + Psyr_0508 0.86 -0.5 564,245 - Psyr_0508 0.87 -1.6 564,252 + Psyr_0508 0.88 +2.7 564,252 + Psyr_0508 0.88 -0.1 564,253 - Psyr_0508 0.89 +2.5 564,253 - Psyr_0508 0.89 +2.7 564,253 - Psyr_0508 0.89 +3.7 564,255 + Psyr_0508 0.89 +1.9 564,255 + Psyr_0508 0.89 -0.5 564,256 - Psyr_0508 0.89 -1.1 564,256 - Psyr_0508 0.89 +1.9 564,256 - Psyr_0508 0.89 -0.7 564,324 + -1.2 564,356 + -0.1 564,356 + +1.4 564,356 + -2.3 564,357 - -0.2 564,402 + -0.7 564,402 + +3.7 564,403 - -0.3 564,597 + -3.1 564,597 + -1.6 564,597 + -3.1 564,597 + -1.1 564,598 - -3.1 564,598 - -0.9 564,690 + -3.1 564,691 - -0.1 564,699 + -0.7 564,783 + -0.1 564,784 - -1.0 564,798 + -0.1 564,799 - -2.1 564,963 - Psyr_0509 0.16 -2.9 564,983 + Psyr_0509 0.17 -2.1 564,983 + Psyr_0509 0.17 -1.1 564,983 + Psyr_0509 0.17 -2.2 564,983 + Psyr_0509 0.17 -0.1 564,983 + Psyr_0509 0.17 -1.3 565,197 + Psyr_0509 0.26 -1.3 565,197 + Psyr_0509 0.26 -1.8 565,198 - Psyr_0509 0.26 +0.9 565,244 + Psyr_0509 0.29 -0.1 565,244 + Psyr_0509 0.29 -4.0 565,244 + Psyr_0509 0.29 +3.3 565,244 + Psyr_0509 0.29 -1.8 565,244 + Psyr_0509 0.29 +1.9 565,244 + Psyr_0509 0.29 -1.7 565,244 + Psyr_0509 0.29 -1.7 565,244 + Psyr_0509 0.29 -1.1 565,244 + Psyr_0509 0.29 +1.9 565,244 + Psyr_0509 0.29 -2.2 565,244 + Psyr_0509 0.29 -1.5 565,245 - Psyr_0509 0.29 -1.5 565,245 - Psyr_0509 0.29 -0.7 565,245 - Psyr_0509 0.29 -3.9 565,245 - Psyr_0509 0.29 +0.9 565,245 - Psyr_0509 0.29 -0.8 565,245 - Psyr_0509 0.29 +0.9 565,263 + Psyr_0509 0.29 -1.9 565,263 + Psyr_0509 0.29 +3.9 565,263 + Psyr_0509 0.29 -0.4 565,264 - Psyr_0509 0.30 -3.2 565,289 + Psyr_0509 0.31 +4.1 565,290 - Psyr_0509 0.31 -3.7 565,317 - Psyr_0509 0.32 +2.9 565,317 - Psyr_0509 0.32 +0.9
Or see this region's nucleotide sequence