Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0489 and Psyr_0490 are separated by 14 nucleotides Psyr_0490 and Psyr_0491 are separated by 50 nucleotides Psyr_0491 and Psyr_0492 are separated by 47 nucleotides
Psyr_0489: Psyr_0489 - Response regulator receiver, at 525,931 to 526,296
_0489
Psyr_0490: Psyr_0490 - CheW-like protein, at 526,311 to 526,850
_0490
Psyr_0491: Psyr_0491 - chemotaxis sensory transducer, at 526,901 to 528,943
_0491
Psyr_0492: Psyr_0492 - Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt, at 528,991 to 534,969
_0492
Position (kb) 526
527
528
529 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 525.912 kb on - strand at 525.912 kb on - strand at 525.973 kb on + strand, within Psyr_0489 at 526.156 kb on - strand, within Psyr_0489 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.745 kb on + strand, within Psyr_0490 at 526.745 kb on + strand, within Psyr_0490 at 526.746 kb on - strand, within Psyr_0490 at 526.746 kb on - strand, within Psyr_0490 at 526.773 kb on - strand, within Psyr_0490 at 526.848 kb on + strand at 526.848 kb on + strand at 526.849 kb on - strand at 526.849 kb on - strand at 526.849 kb on - strand at 526.907 kb on - strand at 526.909 kb on + strand at 526.909 kb on + strand at 526.909 kb on + strand at 526.909 kb on + strand at 526.951 kb on + strand at 526.952 kb on - strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.043 kb on - strand at 527.230 kb on - strand, within Psyr_0491 at 527.599 kb on - strand, within Psyr_0491 at 527.709 kb on - strand, within Psyr_0491 at 528.056 kb on + strand, within Psyr_0491 at 528.056 kb on + strand, within Psyr_0491 at 528.057 kb on - strand, within Psyr_0491 at 528.057 kb on - strand, within Psyr_0491 at 528.057 kb on - strand, within Psyr_0491 at 528.742 kb on + strand at 528.742 kb on + strand at 528.742 kb on + strand at 528.742 kb on + strand at 528.743 kb on - strand at 528.946 kb on + strand at 528.946 kb on + strand at 528.947 kb on - strand at 528.947 kb on - strand at 529.009 kb on + strand at 529.009 kb on + strand at 529.009 kb on + strand at 529.010 kb on - strand at 529.010 kb on - strand at 529.013 kb on + strand at 529.013 kb on + strand at 529.013 kb on + strand at 529.014 kb on - strand at 529.014 kb on - strand at 529.014 kb on - strand at 529.014 kb on - strand at 529.171 kb on + strand at 529.171 kb on + strand at 529.171 kb on + strand at 529.172 kb on - strand at 529.295 kb on - strand at 529.565 kb on - strand at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.802 kb on - strand, within Psyr_0492 at 529.802 kb on - strand, within Psyr_0492 at 529.802 kb on - strand, within Psyr_0492 at 529.802 kb on - strand, within Psyr_0492 at 529.802 kb on - strand, within Psyr_0492 at 529.855 kb on + strand, within Psyr_0492 at 529.855 kb on + strand, within Psyr_0492
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 525,912 - -0.7 525,912 - +1.5 525,973 + Psyr_0489 0.11 -2.7 526,156 - Psyr_0489 0.61 -3.2 526,651 + Psyr_0490 0.63 -1.3 526,651 + Psyr_0490 0.63 -0.1 526,651 + Psyr_0490 0.63 +2.3 526,651 + Psyr_0490 0.63 -0.2 526,651 + Psyr_0490 0.63 +3.4 526,651 + Psyr_0490 0.63 +1.9 526,651 + Psyr_0490 0.63 +0.5 526,651 + Psyr_0490 0.63 +1.5 526,652 - Psyr_0490 0.63 -1.7 526,652 - Psyr_0490 0.63 -0.1 526,652 - Psyr_0490 0.63 -0.1 526,652 - Psyr_0490 0.63 -1.2 526,652 - Psyr_0490 0.63 -2.7 526,745 + Psyr_0490 0.80 -4.3 526,745 + Psyr_0490 0.80 +0.9 526,746 - Psyr_0490 0.81 +1.5 526,746 - Psyr_0490 0.81 -3.1 526,773 - Psyr_0490 0.86 +2.3 526,848 + -2.3 526,848 + -1.8 526,849 - -0.1 526,849 - +2.7 526,849 - -2.0 526,907 - -2.1 526,909 + +2.9 526,909 + -0.2 526,909 + +2.7 526,909 + -0.6 526,951 + -1.8 526,952 - -0.1 527,042 + +2.9 527,042 + -0.1 527,042 + +1.9 527,042 + -0.9 527,042 + +4.0 527,042 + -1.1 527,043 - -3.2 527,230 - Psyr_0491 0.16 -0.1 527,599 - Psyr_0491 0.34 -5.2 527,709 - Psyr_0491 0.40 -2.3 528,056 + Psyr_0491 0.57 +0.5 528,056 + Psyr_0491 0.57 -2.4 528,057 - Psyr_0491 0.57 -0.1 528,057 - Psyr_0491 0.57 -2.1 528,057 - Psyr_0491 0.57 -2.4 528,742 + -0.9 528,742 + -1.3 528,742 + -0.1 528,742 + -0.1 528,743 - +0.9 528,946 + +4.2 528,946 + -1.7 528,947 - -0.1 528,947 - +0.9 529,009 + -2.1 529,009 + -1.3 529,009 + -0.6 529,010 - -3.1 529,010 - -5.8 529,013 + +1.9 529,013 + -3.4 529,013 + +3.8 529,014 - +0.4 529,014 - -0.8 529,014 - -1.0 529,014 - +1.5 529,171 + -1.7 529,171 + +0.8 529,171 + -3.4 529,172 - -0.1 529,295 - -0.1 529,565 - +1.5 529,801 + Psyr_0492 0.14 +0.6 529,801 + Psyr_0492 0.14 +2.3 529,801 + Psyr_0492 0.14 -1.3 529,801 + Psyr_0492 0.14 -1.9 529,801 + Psyr_0492 0.14 +3.3 529,801 + Psyr_0492 0.14 +1.5 529,801 + Psyr_0492 0.14 -0.7 529,801 + Psyr_0492 0.14 +1.8 529,801 + Psyr_0492 0.14 -0.3 529,801 + Psyr_0492 0.14 -2.1 529,801 + Psyr_0492 0.14 +2.3 529,801 + Psyr_0492 0.14 -2.9 529,802 - Psyr_0492 0.14 -2.7 529,802 - Psyr_0492 0.14 -1.7 529,802 - Psyr_0492 0.14 -4.7 529,802 - Psyr_0492 0.14 +1.5 529,802 - Psyr_0492 0.14 +1.9 529,855 + Psyr_0492 0.14 +1.9 529,855 + Psyr_0492 0.14 -2.2
Or see this region's nucleotide sequence