Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0486

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0484 and Psyr_0485 overlap by 1 nucleotidesPsyr_0485 and Psyr_0486 are separated by 75 nucleotidesPsyr_0486 and Psyr_0487 are separated by 166 nucleotides Psyr_0484: Psyr_0484 - Conserved hypothetical protein 250, at 522,103 to 522,543 _0484 Psyr_0485: Psyr_0485 - Protein of unknown function DUF179, at 522,543 to 523,115 _0485 Psyr_0486: Psyr_0486 - TonB, C-terminal, at 523,191 to 524,093 _0486 Psyr_0487: Psyr_0487 - glutathione synthase, at 524,260 to 525,219 _0487 Position (kb) 523 524 525Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.025 kb on - strand, within Psyr_0485at 523.094 kb on - strandat 523.123 kb on - strandat 523.123 kb on - strandat 523.123 kb on - strandat 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.367 kb on - strand, within Psyr_0486at 523.367 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.444 kb on + strand, within Psyr_0486at 523.444 kb on + strand, within Psyr_0486at 523.444 kb on + strand, within Psyr_0486at 523.492 kb on + strand, within Psyr_0486at 523.493 kb on - strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.725 kb on - strand, within Psyr_0486at 523.725 kb on - strand, within Psyr_0486at 523.725 kb on - strand, within Psyr_0486at 523.953 kb on + strand, within Psyr_0486at 523.953 kb on + strand, within Psyr_0486at 523.953 kb on + strand, within Psyr_0486at 523.954 kb on - strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 524.015 kb on + strandat 524.142 kb on + strandat 524.510 kb on - strand, within Psyr_0487

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
523,025 - Psyr_0485 0.84 +0.4
523,025 - Psyr_0485 0.84 -2.8
523,025 - Psyr_0485 0.84 +3.1
523,025 - Psyr_0485 0.84 -2.1
523,025 - Psyr_0485 0.84 -0.6
523,025 - Psyr_0485 0.84 -0.1
523,025 - Psyr_0485 0.84 +4.0
523,025 - Psyr_0485 0.84 -2.3
523,025 - Psyr_0485 0.84 -0.8
523,025 - Psyr_0485 0.84 +4.3
523,025 - Psyr_0485 0.84 -3.1
523,025 - Psyr_0485 0.84 +0.9
523,094 - -2.0
523,123 - -0.1
523,123 - -1.5
523,123 - -0.1
523,366 + Psyr_0486 0.19 -1.1
523,366 + Psyr_0486 0.19 -4.1
523,366 + Psyr_0486 0.19 +3.9
523,366 + Psyr_0486 0.19 -1.9
523,366 + Psyr_0486 0.19 +1.9
523,367 - Psyr_0486 0.19 +3.3
523,367 - Psyr_0486 0.19 +0.8
523,415 - Psyr_0486 0.25 +2.3
523,415 - Psyr_0486 0.25 -1.3
523,415 - Psyr_0486 0.25 -3.3
523,415 - Psyr_0486 0.25 +0.9
523,444 + Psyr_0486 0.28 -0.1
523,444 + Psyr_0486 0.28 -1.9
523,444 + Psyr_0486 0.28 -1.7
523,492 + Psyr_0486 0.33 -0.7
523,493 - Psyr_0486 0.33 -0.8
523,724 + Psyr_0486 0.59 -0.1
523,724 + Psyr_0486 0.59 -0.7
523,724 + Psyr_0486 0.59 -0.6
523,724 + Psyr_0486 0.59 +3.6
523,724 + Psyr_0486 0.59 -0.8
523,725 - Psyr_0486 0.59 +1.2
523,725 - Psyr_0486 0.59 +2.5
523,725 - Psyr_0486 0.59 +3.4
523,953 + Psyr_0486 0.84 -2.0
523,953 + Psyr_0486 0.84 +1.9
523,953 + Psyr_0486 0.84 +1.9
523,954 - Psyr_0486 0.84 -2.1
523,957 + Psyr_0486 0.85 -3.0
523,957 + Psyr_0486 0.85 -0.4
523,957 + Psyr_0486 0.85 +0.2
523,957 + Psyr_0486 0.85 +0.7
523,957 + Psyr_0486 0.85 +3.9
523,957 + Psyr_0486 0.85 -1.6
523,957 + Psyr_0486 0.85 +2.3
523,957 + Psyr_0486 0.85 +3.9
523,957 + Psyr_0486 0.85 +0.8
523,957 + Psyr_0486 0.85 -1.5
523,957 + Psyr_0486 0.85 -1.7
523,957 + Psyr_0486 0.85 -2.4
523,957 + Psyr_0486 0.85 -1.4
523,957 + Psyr_0486 0.85 -0.7
523,957 + Psyr_0486 0.85 +3.6
523,958 - Psyr_0486 0.85 -0.4
523,958 - Psyr_0486 0.85 -2.3
523,958 - Psyr_0486 0.85 +2.9
523,958 - Psyr_0486 0.85 +2.3
523,958 - Psyr_0486 0.85 -4.8
523,958 - Psyr_0486 0.85 -2.4
523,958 - Psyr_0486 0.85 -0.7
523,958 - Psyr_0486 0.85 +3.1
523,958 - Psyr_0486 0.85 +0.2
523,958 - Psyr_0486 0.85 -1.7
523,958 - Psyr_0486 0.85 -2.8
523,958 - Psyr_0486 0.85 -2.7
523,958 - Psyr_0486 0.85 -2.3
524,015 + +2.0
524,142 + +1.1
524,510 - Psyr_0487 0.26 -3.8

Or see this region's nucleotide sequence