Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0478

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0476 and Psyr_0477 are separated by 21 nucleotidesPsyr_0477 and Psyr_0478 are separated by 55 nucleotidesPsyr_0478 and Psyr_0479 are separated by 94 nucleotides Psyr_0476: Psyr_0476 - pyrroline-5-carboxylate reductase, at 514,881 to 515,699 _0476 Psyr_0477: Psyr_0477 - Protein of unknown function UPF0001, at 515,721 to 516,407 _0477 Psyr_0478: Psyr_0478 - pilus retraction ATPase PilT, at 516,463 to 517,497 _0478 Psyr_0479: Psyr_0479 - NLP/P60, at 517,592 to 518,269 _0479 Position (kb) 516 517 518Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 515.496 kb on + strand, within Psyr_0476at 515.734 kb on + strandat 515.996 kb on + strand, within Psyr_0477at 516.117 kb on + strand, within Psyr_0477at 516.117 kb on + strand, within Psyr_0477at 516.118 kb on - strand, within Psyr_0477at 516.236 kb on - strand, within Psyr_0477at 516.268 kb on + strand, within Psyr_0477at 516.268 kb on + strand, within Psyr_0477at 516.268 kb on + strand, within Psyr_0477at 516.268 kb on + strand, within Psyr_0477at 516.268 kb on + strand, within Psyr_0477at 516.268 kb on + strand, within Psyr_0477at 516.268 kb on + strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.269 kb on - strand, within Psyr_0477at 516.302 kb on + strand, within Psyr_0477at 516.444 kb on + strandat 516.444 kb on + strandat 516.444 kb on + strandat 516.444 kb on + strandat 516.444 kb on + strandat 516.444 kb on + strandat 516.445 kb on - strandat 516.445 kb on - strandat 516.445 kb on - strandat 516.445 kb on - strandat 516.445 kb on - strandat 516.445 kb on - strandat 516.445 kb on - strandat 516.445 kb on - strandat 516.445 kb on - strandat 516.445 kb on - strandat 516.445 kb on - strandat 516.462 kb on + strandat 516.463 kb on - strandat 516.463 kb on - strandat 516.469 kb on - strandat 516.570 kb on + strand, within Psyr_0478at 516.616 kb on + strand, within Psyr_0478at 516.616 kb on + strand, within Psyr_0478at 516.616 kb on + strand, within Psyr_0478at 516.616 kb on + strand, within Psyr_0478at 516.617 kb on - strand, within Psyr_0478at 516.617 kb on - strand, within Psyr_0478at 516.617 kb on - strand, within Psyr_0478at 516.617 kb on - strand, within Psyr_0478at 516.817 kb on - strand, within Psyr_0478at 516.898 kb on + strand, within Psyr_0478at 516.899 kb on - strand, within Psyr_0478at 516.899 kb on - strand, within Psyr_0478at 516.906 kb on + strand, within Psyr_0478at 516.912 kb on + strand, within Psyr_0478at 516.912 kb on + strand, within Psyr_0478at 516.912 kb on + strand, within Psyr_0478at 516.912 kb on + strand, within Psyr_0478at 516.913 kb on - strand, within Psyr_0478at 516.924 kb on + strand, within Psyr_0478at 516.924 kb on + strand, within Psyr_0478at 516.924 kb on + strand, within Psyr_0478at 516.925 kb on - strand, within Psyr_0478at 516.925 kb on - strand, within Psyr_0478at 516.925 kb on - strand, within Psyr_0478at 516.925 kb on - strand, within Psyr_0478at 517.133 kb on + strand, within Psyr_0478at 517.366 kb on + strand, within Psyr_0478at 517.366 kb on + strand, within Psyr_0478at 517.366 kb on + strand, within Psyr_0478at 517.366 kb on + strand, within Psyr_0478at 517.366 kb on + strand, within Psyr_0478at 517.367 kb on - strand, within Psyr_0478at 517.367 kb on - strand, within Psyr_0478at 517.367 kb on - strand, within Psyr_0478at 517.367 kb on - strand, within Psyr_0478at 517.367 kb on - strand, within Psyr_0478at 517.367 kb on - strand, within Psyr_0478at 517.488 kb on + strandat 517.654 kb on - strandat 517.743 kb on + strand, within Psyr_0479at 517.743 kb on + strand, within Psyr_0479at 517.744 kb on - strand, within Psyr_0479at 517.896 kb on + strand, within Psyr_0479at 517.896 kb on + strand, within Psyr_0479at 517.896 kb on + strand, within Psyr_0479at 517.896 kb on + strand, within Psyr_0479at 517.896 kb on + strand, within Psyr_0479at 517.896 kb on + strand, within Psyr_0479at 517.896 kb on + strand, within Psyr_0479at 517.896 kb on + strand, within Psyr_0479at 517.897 kb on - strand, within Psyr_0479at 517.897 kb on - strand, within Psyr_0479at 517.897 kb on - strand, within Psyr_0479at 517.986 kb on - strand, within Psyr_0479at 518.167 kb on - strand, within Psyr_0479at 518.167 kb on - strand, within Psyr_0479at 518.227 kb on + strandat 518.227 kb on + strandat 518.227 kb on + strandat 518.227 kb on + strandat 518.227 kb on + strandat 518.227 kb on + strandat 518.227 kb on + strandat 518.227 kb on + strandat 518.227 kb on + strandat 518.227 kb on + strandat 518.227 kb on + strandat 518.228 kb on - strandat 518.228 kb on - strandat 518.228 kb on - strandat 518.228 kb on - strandat 518.228 kb on - strandat 518.228 kb on - strandat 518.228 kb on - strandat 518.228 kb on - strandat 518.228 kb on - strandat 518.231 kb on + strandat 518.231 kb on + strandat 518.231 kb on + strandat 518.231 kb on + strandat 518.231 kb on + strandat 518.303 kb on + strandat 518.303 kb on + strandat 518.303 kb on + strandat 518.303 kb on + strandat 518.303 kb on + strandat 518.303 kb on + strandat 518.303 kb on + strandat 518.304 kb on - strandat 518.304 kb on - strandat 518.306 kb on - strandat 518.449 kb on + strandat 518.449 kb on + strandat 518.449 kb on + strandat 518.460 kb on - strandat 518.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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515,496 + Psyr_0476 0.75 -0.1
515,734 + +4.4
515,996 + Psyr_0477 0.40 +0.9
516,117 + Psyr_0477 0.58 -1.1
516,117 + Psyr_0477 0.58 -1.1
516,118 - Psyr_0477 0.58 -1.9
516,236 - Psyr_0477 0.75 +1.9
516,268 + Psyr_0477 0.80 -0.8
516,268 + Psyr_0477 0.80 +2.9
516,268 + Psyr_0477 0.80 +2.5
516,268 + Psyr_0477 0.80 +3.7
516,268 + Psyr_0477 0.80 +1.5
516,268 + Psyr_0477 0.80 +2.5
516,268 + Psyr_0477 0.80 -0.6
516,269 - Psyr_0477 0.80 -2.1
516,269 - Psyr_0477 0.80 +3.5
516,269 - Psyr_0477 0.80 -0.1
516,269 - Psyr_0477 0.80 +2.9
516,269 - Psyr_0477 0.80 +0.6
516,269 - Psyr_0477 0.80 +3.1
516,269 - Psyr_0477 0.80 +4.0
516,269 - Psyr_0477 0.80 +0.9
516,269 - Psyr_0477 0.80 +2.3
516,269 - Psyr_0477 0.80 +0.9
516,269 - Psyr_0477 0.80 -0.5
516,269 - Psyr_0477 0.80 +0.5
516,302 + Psyr_0477 0.85 +2.5
516,444 + +1.0
516,444 + +1.9
516,444 + +3.7
516,444 + -0.4
516,444 + +3.5
516,444 + -2.1
516,445 - -2.1
516,445 - -1.2
516,445 - +4.6
516,445 - -3.5
516,445 - -0.5
516,445 - +0.3
516,445 - -1.4
516,445 - +1.0
516,445 - -3.2
516,445 - -1.3
516,445 - -0.1
516,462 + -2.5
516,463 - -0.1
516,463 - -1.4
516,469 - -0.1
516,570 + Psyr_0478 0.10 -2.4
516,616 + Psyr_0478 0.15 -1.8
516,616 + Psyr_0478 0.15 +0.0
516,616 + Psyr_0478 0.15 -2.9
516,616 + Psyr_0478 0.15 +1.5
516,617 - Psyr_0478 0.15 -1.6
516,617 - Psyr_0478 0.15 +1.5
516,617 - Psyr_0478 0.15 -3.5
516,617 - Psyr_0478 0.15 -1.9
516,817 - Psyr_0478 0.34 +2.3
516,898 + Psyr_0478 0.42 -2.2
516,899 - Psyr_0478 0.42 -0.7
516,899 - Psyr_0478 0.42 +0.2
516,906 + Psyr_0478 0.43 -1.7
516,912 + Psyr_0478 0.43 -1.9
516,912 + Psyr_0478 0.43 -0.7
516,912 + Psyr_0478 0.43 -1.8
516,912 + Psyr_0478 0.43 +1.1
516,913 - Psyr_0478 0.43 -0.7
516,924 + Psyr_0478 0.45 +4.5
516,924 + Psyr_0478 0.45 +4.5
516,924 + Psyr_0478 0.45 -1.4
516,925 - Psyr_0478 0.45 +0.6
516,925 - Psyr_0478 0.45 -1.6
516,925 - Psyr_0478 0.45 +1.6
516,925 - Psyr_0478 0.45 -1.7
517,133 + Psyr_0478 0.65 -0.8
517,366 + Psyr_0478 0.87 +1.9
517,366 + Psyr_0478 0.87 -0.6
517,366 + Psyr_0478 0.87 +2.5
517,366 + Psyr_0478 0.87 +0.0
517,366 + Psyr_0478 0.87 -2.7
517,367 - Psyr_0478 0.87 +2.3
517,367 - Psyr_0478 0.87 -0.6
517,367 - Psyr_0478 0.87 -0.5
517,367 - Psyr_0478 0.87 +0.0
517,367 - Psyr_0478 0.87 +1.9
517,367 - Psyr_0478 0.87 -0.7
517,488 + +3.3
517,654 - +1.5
517,743 + Psyr_0479 0.22 -1.1
517,743 + Psyr_0479 0.22 -3.6
517,744 - Psyr_0479 0.22 -0.1
517,896 + Psyr_0479 0.45 +1.8
517,896 + Psyr_0479 0.45 +0.2
517,896 + Psyr_0479 0.45 -0.7
517,896 + Psyr_0479 0.45 +1.0
517,896 + Psyr_0479 0.45 +3.3
517,896 + Psyr_0479 0.45 +2.5
517,896 + Psyr_0479 0.45 +0.9
517,896 + Psyr_0479 0.45 +0.9
517,897 - Psyr_0479 0.45 -0.5
517,897 - Psyr_0479 0.45 +2.3
517,897 - Psyr_0479 0.45 +3.1
517,986 - Psyr_0479 0.58 -2.3
518,167 - Psyr_0479 0.85 +1.9
518,167 - Psyr_0479 0.85 +2.3
518,227 + +0.1
518,227 + -1.8
518,227 + +1.9
518,227 + +1.5
518,227 + +3.7
518,227 + -1.5
518,227 + -2.4
518,227 + -2.4
518,227 + -0.1
518,227 + +3.6
518,227 + -2.2
518,228 - +1.1
518,228 - -2.9
518,228 - +0.2
518,228 - -1.8
518,228 - -1.8
518,228 - -0.7
518,228 - -0.8
518,228 - +0.9
518,228 - -1.8
518,231 + -2.0
518,231 + -2.7
518,231 + -2.2
518,231 + -1.5
518,231 + -1.6
518,303 + +1.5
518,303 + -3.5
518,303 + -4.8
518,303 + +2.3
518,303 + +0.9
518,303 + -1.2
518,303 + -3.3
518,304 - -5.2
518,304 - -1.9
518,306 - -2.4
518,449 + +3.8
518,449 + -1.3
518,449 + +1.9
518,460 - -3.8
518,485 - -1.6

Or see this region's nucleotide sequence