Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0464

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0463 and Psyr_0464 are separated by 134 nucleotidesPsyr_0464 and Psyr_0465 overlap by 1 nucleotides Psyr_0463: Psyr_0463 - Gluconate transporter, at 501,300 to 502,757 _0463 Psyr_0464: Psyr_0464 - hypothetical protein, at 502,892 to 503,530 _0464 Psyr_0465: Psyr_0465 - HopAN1 protein, at 503,530 to 504,819 _0465 Position (kb) 502 503 504Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 502.145 kb on - strand, within Psyr_0463at 502.369 kb on + strand, within Psyr_0463at 502.687 kb on + strandat 502.688 kb on - strandat 502.842 kb on - strandat 502.842 kb on - strandat 503.010 kb on + strand, within Psyr_0464at 503.010 kb on + strand, within Psyr_0464at 503.149 kb on + strand, within Psyr_0464at 503.461 kb on + strand, within Psyr_0464at 503.475 kb on + strandat 503.476 kb on - strandat 503.476 kb on - strandat 503.865 kb on - strand, within Psyr_0465at 503.865 kb on - strand, within Psyr_0465at 503.865 kb on - strand, within Psyr_0465at 503.865 kb on - strand, within Psyr_0465at 503.873 kb on - strand, within Psyr_0465at 504.176 kb on + strand, within Psyr_0465at 504.176 kb on + strand, within Psyr_0465at 504.177 kb on - strand, within Psyr_0465at 504.177 kb on - strand, within Psyr_0465at 504.177 kb on - strand, within Psyr_0465at 504.177 kb on - strand, within Psyr_0465at 504.284 kb on + strand, within Psyr_0465at 504.284 kb on + strand, within Psyr_0465

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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502,145 - Psyr_0463 0.58 -0.1
502,369 + Psyr_0463 0.73 -1.8
502,687 + -1.5
502,688 - -1.7
502,842 - +2.3
502,842 - -1.0
503,010 + Psyr_0464 0.18 -1.5
503,010 + Psyr_0464 0.18 -3.5
503,149 + Psyr_0464 0.40 -2.3
503,461 + Psyr_0464 0.89 -3.7
503,475 + -2.1
503,476 - -4.2
503,476 - -1.1
503,865 - Psyr_0465 0.26 +0.9
503,865 - Psyr_0465 0.26 -1.7
503,865 - Psyr_0465 0.26 -2.9
503,865 - Psyr_0465 0.26 -0.6
503,873 - Psyr_0465 0.27 +0.9
504,176 + Psyr_0465 0.50 +1.6
504,176 + Psyr_0465 0.50 -0.8
504,177 - Psyr_0465 0.50 -4.3
504,177 - Psyr_0465 0.50 -0.7
504,177 - Psyr_0465 0.50 -0.4
504,177 - Psyr_0465 0.50 +0.9
504,284 + Psyr_0465 0.58 -1.1
504,284 + Psyr_0465 0.58 +3.4

Or see this region's nucleotide sequence