Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0464
Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Mitomycin C 0.625 ug/ml |
---|---|---|---|---|---|
remove | |||||
502,145 | - | Psyr_0463 | 0.58 | -0.1 | |
502,369 | + | Psyr_0463 | 0.73 | -1.8 | |
502,687 | + | -1.5 | |||
502,688 | - | -1.7 | |||
502,842 | - | +2.3 | |||
502,842 | - | -1.0 | |||
503,010 | + | Psyr_0464 | 0.18 | -1.5 | |
503,010 | + | Psyr_0464 | 0.18 | -3.5 | |
503,149 | + | Psyr_0464 | 0.40 | -2.3 | |
503,461 | + | Psyr_0464 | 0.89 | -3.7 | |
503,475 | + | -2.1 | |||
503,476 | - | -4.2 | |||
503,476 | - | -1.1 | |||
503,865 | - | Psyr_0465 | 0.26 | +0.9 | |
503,865 | - | Psyr_0465 | 0.26 | -1.7 | |
503,865 | - | Psyr_0465 | 0.26 | -2.9 | |
503,865 | - | Psyr_0465 | 0.26 | -0.6 | |
503,873 | - | Psyr_0465 | 0.27 | +0.9 | |
504,176 | + | Psyr_0465 | 0.50 | +1.6 | |
504,176 | + | Psyr_0465 | 0.50 | -0.8 | |
504,177 | - | Psyr_0465 | 0.50 | -4.3 | |
504,177 | - | Psyr_0465 | 0.50 | -0.7 | |
504,177 | - | Psyr_0465 | 0.50 | -0.4 | |
504,177 | - | Psyr_0465 | 0.50 | +0.9 | |
504,284 | + | Psyr_0465 | 0.58 | -1.1 | |
504,284 | + | Psyr_0465 | 0.58 | +3.4 |
Or see this region's nucleotide sequence