Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0356

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0355 and Psyr_0356 are separated by 577 nucleotidesPsyr_0356 and Psyr_0357 are separated by 3 nucleotidesPsyr_0357 and Psyr_0358 overlap by 4 nucleotides Psyr_0355: Psyr_0355 - conserved hypothetical protein, at 380,690 to 381,409 _0355 Psyr_0356: Psyr_0356 - L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein, at 381,987 to 382,730 _0356 Psyr_0357: Psyr_0357 - Diaminopimelate ABC transporter membrane protein / L-cystine ABC transporter membrane protein, at 382,734 to 383,402 _0357 Psyr_0358: Psyr_0358 - Diaminopimelate-binding protein / L-cystine-binding protein, at 383,399 to 384,196 _0358 Position (kb) 381 382 383Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 380.990 kb on + strand, within Psyr_0355at 380.990 kb on + strand, within Psyr_0355at 380.990 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.086 kb on + strand, within Psyr_0355at 381.086 kb on + strand, within Psyr_0355at 381.086 kb on + strand, within Psyr_0355at 381.087 kb on - strand, within Psyr_0355at 381.087 kb on - strand, within Psyr_0355at 381.141 kb on + strand, within Psyr_0355at 381.141 kb on + strand, within Psyr_0355at 381.141 kb on + strand, within Psyr_0355at 381.141 kb on + strand, within Psyr_0355at 381.141 kb on + strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.185 kb on + strand, within Psyr_0355at 381.185 kb on + strand, within Psyr_0355at 381.185 kb on + strand, within Psyr_0355at 381.186 kb on - strand, within Psyr_0355at 381.186 kb on - strand, within Psyr_0355at 381.186 kb on - strand, within Psyr_0355at 381.237 kb on + strand, within Psyr_0355at 381.237 kb on + strand, within Psyr_0355at 381.237 kb on + strand, within Psyr_0355at 381.238 kb on - strand, within Psyr_0355at 381.332 kb on + strand, within Psyr_0355at 381.332 kb on + strand, within Psyr_0355at 381.332 kb on + strand, within Psyr_0355at 381.333 kb on - strand, within Psyr_0355at 381.333 kb on - strand, within Psyr_0355at 381.380 kb on - strandat 381.434 kb on - strandat 381.434 kb on - strandat 381.456 kb on - strandat 381.502 kb on + strandat 381.677 kb on - strandat 381.677 kb on - strandat 381.683 kb on + strandat 381.683 kb on + strandat 381.683 kb on + strandat 381.683 kb on + strandat 381.683 kb on + strandat 381.683 kb on + strandat 381.684 kb on - strandat 381.709 kb on + strandat 381.732 kb on + strandat 381.732 kb on + strandat 381.732 kb on + strandat 381.733 kb on - strandat 381.733 kb on - strandat 381.841 kb on + strandat 381.841 kb on + strandat 382.600 kb on - strand, within Psyr_0356at 382.600 kb on - strand, within Psyr_0356at 382.726 kb on - strandat 382.726 kb on - strandat 382.726 kb on - strandat 382.726 kb on - strandat 382.813 kb on + strand, within Psyr_0357at 382.813 kb on + strand, within Psyr_0357at 382.814 kb on - strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 383.027 kb on + strand, within Psyr_0357at 383.028 kb on - strand, within Psyr_0357at 383.105 kb on + strand, within Psyr_0357at 383.106 kb on - strand, within Psyr_0357at 383.176 kb on + strand, within Psyr_0357at 383.176 kb on + strand, within Psyr_0357at 383.177 kb on - strand, within Psyr_0357at 383.177 kb on - strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.338 kb on + strandat 383.338 kb on + strandat 383.338 kb on + strandat 383.339 kb on - strandat 383.339 kb on - strandat 383.341 kb on + strandat 383.341 kb on + strandat 383.341 kb on + strandat 383.342 kb on - strandat 383.512 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.722 kb on - strand, within Psyr_0358at 383.722 kb on - strand, within Psyr_0358

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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380,990 + Psyr_0355 0.42 -1.1
380,990 + Psyr_0355 0.42 +0.9
380,990 + Psyr_0355 0.42 -2.0
381,009 + Psyr_0355 0.44 -1.3
381,009 + Psyr_0355 0.44 +1.5
381,009 + Psyr_0355 0.44 +3.4
381,009 + Psyr_0355 0.44 +2.2
381,009 + Psyr_0355 0.44 -0.0
381,009 + Psyr_0355 0.44 +3.2
381,009 + Psyr_0355 0.44 +3.9
381,009 + Psyr_0355 0.44 -1.3
381,009 + Psyr_0355 0.44 -2.5
381,010 - Psyr_0355 0.44 -1.4
381,010 - Psyr_0355 0.44 +0.3
381,010 - Psyr_0355 0.44 -4.0
381,010 - Psyr_0355 0.44 -3.2
381,010 - Psyr_0355 0.44 -0.3
381,010 - Psyr_0355 0.44 -0.1
381,010 - Psyr_0355 0.44 -0.5
381,086 + Psyr_0355 0.55 -1.2
381,086 + Psyr_0355 0.55 -0.7
381,086 + Psyr_0355 0.55 -0.5
381,087 - Psyr_0355 0.55 +4.5
381,087 - Psyr_0355 0.55 +1.5
381,141 + Psyr_0355 0.63 +3.8
381,141 + Psyr_0355 0.63 -2.5
381,141 + Psyr_0355 0.63 -3.9
381,141 + Psyr_0355 0.63 -5.5
381,141 + Psyr_0355 0.63 +3.5
381,142 - Psyr_0355 0.63 -3.7
381,142 - Psyr_0355 0.63 -2.8
381,142 - Psyr_0355 0.63 -1.9
381,142 - Psyr_0355 0.63 +0.2
381,142 - Psyr_0355 0.63 +1.5
381,142 - Psyr_0355 0.63 -0.6
381,142 - Psyr_0355 0.63 -0.3
381,142 - Psyr_0355 0.63 -0.9
381,142 - Psyr_0355 0.63 -0.1
381,142 - Psyr_0355 0.63 -0.3
381,142 - Psyr_0355 0.63 +3.7
381,142 - Psyr_0355 0.63 -0.1
381,142 - Psyr_0355 0.63 -0.9
381,142 - Psyr_0355 0.63 -1.3
381,185 + Psyr_0355 0.69 -1.0
381,185 + Psyr_0355 0.69 -0.8
381,185 + Psyr_0355 0.69 -0.6
381,186 - Psyr_0355 0.69 -2.5
381,186 - Psyr_0355 0.69 -0.1
381,186 - Psyr_0355 0.69 -0.4
381,237 + Psyr_0355 0.76 +0.8
381,237 + Psyr_0355 0.76 -1.3
381,237 + Psyr_0355 0.76 -3.2
381,238 - Psyr_0355 0.76 -0.7
381,332 + Psyr_0355 0.89 +2.7
381,332 + Psyr_0355 0.89 +1.1
381,332 + Psyr_0355 0.89 -1.3
381,333 - Psyr_0355 0.89 +1.5
381,333 - Psyr_0355 0.89 -2.4
381,380 - +3.7
381,434 - +2.7
381,434 - -1.0
381,456 - +1.5
381,502 + -0.8
381,677 - -1.1
381,677 - -2.4
381,683 + +0.4
381,683 + +0.4
381,683 + -0.8
381,683 + +0.5
381,683 + +3.5
381,683 + +2.5
381,684 - -0.3
381,709 + -1.6
381,732 + +1.5
381,732 + -1.0
381,732 + +1.5
381,733 - +0.2
381,733 - -1.8
381,841 + -2.0
381,841 + +4.1
382,600 - Psyr_0356 0.82 -3.5
382,600 - Psyr_0356 0.82 +0.8
382,726 - +2.2
382,726 - +4.0
382,726 - -3.3
382,726 - -0.3
382,813 + Psyr_0357 0.12 -2.2
382,813 + Psyr_0357 0.12 +1.3
382,814 - Psyr_0357 0.12 +0.1
382,834 + Psyr_0357 0.15 +3.6
382,834 + Psyr_0357 0.15 -2.4
382,834 + Psyr_0357 0.15 +0.1
382,834 + Psyr_0357 0.15 +0.3
382,834 + Psyr_0357 0.15 +2.5
382,834 + Psyr_0357 0.15 -1.0
382,834 + Psyr_0357 0.15 -1.5
382,834 + Psyr_0357 0.15 +2.2
382,835 - Psyr_0357 0.15 -2.0
382,835 - Psyr_0357 0.15 +4.2
382,835 - Psyr_0357 0.15 +1.9
382,835 - Psyr_0357 0.15 +0.4
382,835 - Psyr_0357 0.15 -3.5
382,835 - Psyr_0357 0.15 +1.9
382,835 - Psyr_0357 0.15 +0.1
382,835 - Psyr_0357 0.15 -0.1
382,835 - Psyr_0357 0.15 -3.5
382,835 - Psyr_0357 0.15 -1.1
383,027 + Psyr_0357 0.44 -1.0
383,028 - Psyr_0357 0.44 -2.5
383,105 + Psyr_0357 0.55 +2.5
383,106 - Psyr_0357 0.56 -0.8
383,176 + Psyr_0357 0.66 -1.1
383,176 + Psyr_0357 0.66 +1.9
383,177 - Psyr_0357 0.66 +0.9
383,177 - Psyr_0357 0.66 +1.5
383,227 + Psyr_0357 0.74 +1.5
383,227 + Psyr_0357 0.74 +3.4
383,227 + Psyr_0357 0.74 +1.5
383,227 + Psyr_0357 0.74 +1.5
383,227 + Psyr_0357 0.74 +4.0
383,227 + Psyr_0357 0.74 -1.5
383,227 + Psyr_0357 0.74 -0.8
383,227 + Psyr_0357 0.74 +2.9
383,227 + Psyr_0357 0.74 -2.7
383,227 + Psyr_0357 0.74 -0.1
383,227 + Psyr_0357 0.74 -1.7
383,227 + Psyr_0357 0.74 -0.6
383,228 - Psyr_0357 0.74 -0.3
383,228 - Psyr_0357 0.74 +1.5
383,228 - Psyr_0357 0.74 -0.1
383,228 - Psyr_0357 0.74 +3.2
383,228 - Psyr_0357 0.74 -0.6
383,228 - Psyr_0357 0.74 -5.1
383,338 + -2.5
383,338 + -0.8
383,338 + -2.3
383,339 - +0.1
383,339 - +1.9
383,341 + -1.4
383,341 + -0.4
383,341 + -1.0
383,342 - +4.2
383,512 + Psyr_0358 0.14 +1.9
383,636 + Psyr_0358 0.30 -2.4
383,636 + Psyr_0358 0.30 -0.8
383,636 + Psyr_0358 0.30 -0.6
383,636 + Psyr_0358 0.30 -1.5
383,636 + Psyr_0358 0.30 -1.1
383,637 - Psyr_0358 0.30 +4.7
383,637 - Psyr_0358 0.30 +0.1
383,637 - Psyr_0358 0.30 +3.2
383,637 - Psyr_0358 0.30 -0.1
383,674 - Psyr_0358 0.34 -0.8
383,674 - Psyr_0358 0.34 +2.2
383,674 - Psyr_0358 0.34 -2.1
383,674 - Psyr_0358 0.34 +2.9
383,721 + Psyr_0358 0.40 -1.0
383,721 + Psyr_0358 0.40 +1.5
383,721 + Psyr_0358 0.40 -2.0
383,722 - Psyr_0358 0.40 +2.2
383,722 - Psyr_0358 0.40 -0.1

Or see this region's nucleotide sequence