Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0294 and Psyr_0295 are separated by 593 nucleotides Psyr_0295 and Psyr_0296 overlap by 14 nucleotides Psyr_0296 and Psyr_0297 overlap by 1 nucleotides
Psyr_0294: Psyr_0294 - Exopolyphosphatase, at 313,637 to 315,217
_0294
Psyr_0295: Psyr_0295 - amino acid ABC transporter ATP-binding protein, PAAT family, at 315,811 to 316,545
_0295
Psyr_0296: Psyr_0296 - amino acid ABC transporter membrane protein 2, PAAT family, at 316,532 to 317,179
_0296
Psyr_0297: Psyr_0297 - amino acid ABC transporter membrane protein 1, PAAT family, at 317,179 to 317,844
_0297
Position (kb) 315
316
317 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 315.070 kb on + strand at 315.070 kb on + strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.232 kb on - strand at 315.235 kb on - strand at 315.235 kb on - strand at 315.251 kb on + strand at 315.325 kb on + strand at 315.325 kb on + strand at 315.349 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.428 kb on + strand at 315.428 kb on + strand at 315.428 kb on + strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.557 kb on + strand at 315.558 kb on - strand at 315.558 kb on - strand at 315.558 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.649 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.758 kb on + strand at 315.759 kb on - strand at 316.069 kb on + strand, within Psyr_0295 at 316.069 kb on + strand, within Psyr_0295 at 316.069 kb on + strand, within Psyr_0295 at 316.070 kb on - strand, within Psyr_0295 at 316.349 kb on + strand, within Psyr_0295 at 316.349 kb on + strand, within Psyr_0295 at 316.474 kb on + strand at 316.474 kb on + strand at 316.508 kb on + strand at 316.508 kb on + strand at 316.509 kb on - strand at 316.509 kb on - strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.515 kb on + strand at 316.515 kb on + strand at 316.515 kb on + strand at 316.515 kb on + strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.587 kb on + strand at 316.588 kb on - strand at 316.602 kb on + strand, within Psyr_0296 at 316.602 kb on + strand, within Psyr_0296 at 316.623 kb on + strand, within Psyr_0296 at 316.624 kb on - strand, within Psyr_0296 at 316.624 kb on - strand, within Psyr_0296 at 316.785 kb on + strand, within Psyr_0296 at 316.786 kb on - strand, within Psyr_0296 at 316.885 kb on - strand, within Psyr_0296 at 316.885 kb on - strand, within Psyr_0296 at 316.885 kb on - strand, within Psyr_0296 at 316.895 kb on - strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.014 kb on + strand, within Psyr_0296 at 317.015 kb on - strand, within Psyr_0296 at 317.015 kb on - strand, within Psyr_0296 at 317.015 kb on - strand, within Psyr_0296 at 317.015 kb on - strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.198 kb on + strand at 317.198 kb on + strand at 317.198 kb on + strand at 317.198 kb on + strand at 317.199 kb on - strand at 317.199 kb on - strand at 317.199 kb on - strand at 317.199 kb on - strand at 317.252 kb on + strand, within Psyr_0297 at 317.253 kb on - strand, within Psyr_0297 at 317.253 kb on - strand, within Psyr_0297 at 317.253 kb on - strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.274 kb on - strand, within Psyr_0297 at 317.274 kb on - strand, within Psyr_0297 at 317.274 kb on - strand, within Psyr_0297 at 317.274 kb on - strand, within Psyr_0297 at 317.274 kb on - strand, within Psyr_0297 at 317.535 kb on - strand, within Psyr_0297
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 315,070 + -1.7 315,070 + -0.4 315,071 - -0.1 315,071 - +0.9 315,071 - -3.7 315,071 - -0.7 315,071 - -4.1 315,071 - -0.1 315,232 - -2.3 315,235 - +2.2 315,235 - -1.2 315,251 + -1.7 315,325 + -2.0 315,325 + -2.7 315,349 + +2.9 315,367 + -2.6 315,367 + -2.8 315,367 + -0.4 315,367 + -0.3 315,367 + -0.8 315,370 + +2.5 315,370 + -2.7 315,370 + +0.5 315,370 + -1.0 315,370 + -0.6 315,370 + +4.3 315,370 + -0.4 315,370 + -4.6 315,370 + -1.3 315,370 + +1.3 315,371 - +0.9 315,371 - +0.6 315,371 - +3.2 315,371 - +1.3 315,371 - +0.9 315,371 - -3.1 315,371 - +2.7 315,371 - -2.4 315,428 + -0.1 315,428 + +4.7 315,428 + -1.2 315,429 - -2.5 315,429 - -0.2 315,429 - +2.5 315,429 - -1.7 315,429 - +1.1 315,502 + +3.7 315,502 + -2.9 315,502 + -1.1 315,502 + -0.8 315,502 + -1.1 315,502 + -0.6 315,502 + -2.0 315,502 + -0.5 315,502 + -1.2 315,502 + +0.9 315,502 + +1.1 315,502 + -0.2 315,502 + -1.5 315,503 - +3.2 315,503 - -1.1 315,503 - -2.0 315,503 - +0.9 315,503 - -0.1 315,503 - +0.9 315,503 - +0.9 315,503 - +3.4 315,503 - -1.9 315,503 - -1.6 315,503 - -4.7 315,503 - -1.0 315,503 - -2.2 315,503 - -0.8 315,503 - +1.5 315,503 - +3.4 315,503 - -3.1 315,503 - -1.7 315,557 + +0.4 315,558 - +0.9 315,558 - -2.4 315,558 - -0.1 315,592 - +1.5 315,592 - -0.1 315,592 - +0.9 315,592 - +0.3 315,592 - +1.9 315,649 + -1.4 315,756 + +3.7 315,756 + -3.1 315,756 + -0.7 315,756 + -1.9 315,756 + -4.6 315,757 - +0.5 315,757 - +1.5 315,757 - -0.7 315,757 - -0.8 315,757 - +4.7 315,757 - -3.2 315,757 - -0.1 315,757 - +4.8 315,757 - +2.5 315,757 - -1.2 315,758 + -0.4 315,759 - -0.6 316,069 + Psyr_0295 0.35 -0.1 316,069 + Psyr_0295 0.35 +0.2 316,069 + Psyr_0295 0.35 +2.9 316,070 - Psyr_0295 0.35 -2.1 316,349 + Psyr_0295 0.73 +0.9 316,349 + Psyr_0295 0.73 -1.8 316,474 + -0.9 316,474 + -1.4 316,508 + -1.4 316,508 + +1.5 316,509 - +1.5 316,509 - -0.8 316,511 + -0.4 316,511 + -0.1 316,511 + +2.7 316,511 + -4.0 316,511 + +1.6 316,511 + -1.7 316,511 + -0.6 316,511 + +3.4 316,511 + -1.6 316,511 + -1.0 316,511 + -1.0 316,512 - -0.1 316,512 - -1.2 316,512 - -1.3 316,512 - -0.1 316,512 - -1.2 316,512 - -4.3 316,512 - -0.9 316,515 + +0.3 316,515 + -0.7 316,515 + +1.5 316,515 + +1.5 316,516 - +1.6 316,516 - -4.9 316,516 - -0.5 316,516 - -2.5 316,516 - -2.7 316,516 - -0.7 316,516 - -1.9 316,516 - +1.8 316,516 - -0.8 316,516 - -0.1 316,516 - +2.2 316,587 + -1.8 316,588 - -2.0 316,602 + Psyr_0296 0.11 -0.4 316,602 + Psyr_0296 0.11 +3.6 316,623 + Psyr_0296 0.14 -1.0 316,624 - Psyr_0296 0.14 +0.6 316,624 - Psyr_0296 0.14 -2.5 316,785 + Psyr_0296 0.39 -1.5 316,786 - Psyr_0296 0.39 +1.3 316,885 - Psyr_0296 0.54 +4.4 316,885 - Psyr_0296 0.54 +1.4 316,885 - Psyr_0296 0.54 +2.1 316,895 - Psyr_0296 0.56 -1.0 317,012 + Psyr_0296 0.74 -0.9 317,012 + Psyr_0296 0.74 -1.0 317,012 + Psyr_0296 0.74 -1.2 317,012 + Psyr_0296 0.74 +0.0 317,012 + Psyr_0296 0.74 -2.2 317,012 + Psyr_0296 0.74 +2.5 317,012 + Psyr_0296 0.74 -1.1 317,012 + Psyr_0296 0.74 -0.1 317,012 + Psyr_0296 0.74 +0.7 317,012 + Psyr_0296 0.74 +0.5 317,012 + Psyr_0296 0.74 +0.9 317,012 + Psyr_0296 0.74 -2.0 317,012 + Psyr_0296 0.74 +0.1 317,012 + Psyr_0296 0.74 -1.3 317,012 + Psyr_0296 0.74 -0.1 317,012 + Psyr_0296 0.74 -0.9 317,012 + Psyr_0296 0.74 -2.7 317,012 + Psyr_0296 0.74 +0.2 317,013 - Psyr_0296 0.74 -1.4 317,013 - Psyr_0296 0.74 +0.3 317,013 - Psyr_0296 0.74 +3.1 317,013 - Psyr_0296 0.74 -0.8 317,013 - Psyr_0296 0.74 -0.2 317,013 - Psyr_0296 0.74 -1.4 317,013 - Psyr_0296 0.74 +1.4 317,013 - Psyr_0296 0.74 -1.7 317,013 - Psyr_0296 0.74 -2.6 317,013 - Psyr_0296 0.74 +0.3 317,013 - Psyr_0296 0.74 +4.4 317,013 - Psyr_0296 0.74 +0.8 317,013 - Psyr_0296 0.74 +4.2 317,013 - Psyr_0296 0.74 -0.7 317,014 + Psyr_0296 0.74 -0.9 317,015 - Psyr_0296 0.75 -1.0 317,015 - Psyr_0296 0.75 +0.0 317,015 - Psyr_0296 0.75 -1.1 317,015 - Psyr_0296 0.75 -1.5 317,016 + Psyr_0296 0.75 -0.8 317,016 + Psyr_0296 0.75 -0.1 317,016 + Psyr_0296 0.75 -3.3 317,016 + Psyr_0296 0.75 -1.3 317,016 + Psyr_0296 0.75 -1.0 317,016 + Psyr_0296 0.75 -1.1 317,016 + Psyr_0296 0.75 -2.7 317,017 - Psyr_0296 0.75 +1.0 317,017 - Psyr_0296 0.75 -3.4 317,017 - Psyr_0296 0.75 -0.3 317,017 - Psyr_0296 0.75 +0.7 317,017 - Psyr_0296 0.75 -1.5 317,017 - Psyr_0296 0.75 +4.4 317,017 - Psyr_0296 0.75 +0.6 317,017 - Psyr_0296 0.75 -0.7 317,017 - Psyr_0296 0.75 -1.3 317,017 - Psyr_0296 0.75 -0.9 317,017 - Psyr_0296 0.75 -2.3 317,017 - Psyr_0296 0.75 +0.0 317,017 - Psyr_0296 0.75 -1.3 317,017 - Psyr_0296 0.75 -0.8 317,017 - Psyr_0296 0.75 -2.7 317,198 + -3.5 317,198 + -0.1 317,198 + +1.6 317,198 + -1.7 317,199 - +1.4 317,199 - -2.2 317,199 - -2.4 317,199 - -0.9 317,252 + Psyr_0297 0.11 +0.9 317,253 - Psyr_0297 0.11 -0.6 317,253 - Psyr_0297 0.11 +1.1 317,253 - Psyr_0297 0.11 -2.3 317,273 + Psyr_0297 0.14 -1.5 317,273 + Psyr_0297 0.14 -1.3 317,273 + Psyr_0297 0.14 -1.4 317,273 + Psyr_0297 0.14 +3.5 317,273 + Psyr_0297 0.14 -4.4 317,273 + Psyr_0297 0.14 -1.1 317,274 - Psyr_0297 0.14 -0.4 317,274 - Psyr_0297 0.14 -1.2 317,274 - Psyr_0297 0.14 +3.6 317,274 - Psyr_0297 0.14 -1.1 317,274 - Psyr_0297 0.14 -3.9 317,535 - Psyr_0297 0.53 -1.8
Or see this region's nucleotide sequence