Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0281 and Psyr_0282 overlap by 1 nucleotides Psyr_0282 and Psyr_0283 are separated by 50 nucleotides Psyr_0283 and Psyr_0284 are separated by 245 nucleotides Psyr_0284 and Psyr_0285 are separated by 69 nucleotides
Psyr_0281: Psyr_0281 - ABC transporter, at 299,935 to 300,942
_0281
Psyr_0282: Psyr_0282 - Binding-protein-dependent transport systems inner membrane component, at 300,942 to 301,616
_0282
Psyr_0283: Psyr_0283 - NLPA lipoprotein, at 301,667 to 302,440
_0283
Psyr_0284: Psyr_0284 - Electron transport protein SCO1/SenC, at 302,686 to 303,318
_0284
Psyr_0285: Psyr_0285 - Cytochrome c oxidase assembly protein CtaG/Cox11, at 303,388 to 303,879
_0285
Position (kb) 301
302
303 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 300.758 kb on - strand, within Psyr_0281 at 300.758 kb on - strand, within Psyr_0281 at 300.758 kb on - strand, within Psyr_0281 at 300.758 kb on - strand, within Psyr_0281 at 300.822 kb on + strand, within Psyr_0281 at 300.924 kb on + strand at 300.924 kb on + strand at 300.924 kb on + strand at 300.925 kb on - strand at 300.925 kb on - strand at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.120 kb on - strand, within Psyr_0282 at 301.120 kb on - strand, within Psyr_0282 at 301.543 kb on + strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.631 kb on - strand at 301.678 kb on - strand at 301.678 kb on - strand at 301.678 kb on - strand at 301.835 kb on + strand, within Psyr_0283 at 301.835 kb on + strand, within Psyr_0283 at 301.835 kb on + strand, within Psyr_0283 at 301.835 kb on + strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.871 kb on - strand, within Psyr_0283 at 302.237 kb on + strand, within Psyr_0283 at 302.237 kb on + strand, within Psyr_0283 at 302.237 kb on + strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.411 kb on + strand at 302.411 kb on + strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.612 kb on - strand at 302.612 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.752 kb on - strand, within Psyr_0284 at 302.813 kb on + strand, within Psyr_0284 at 302.813 kb on + strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.814 kb on - strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.907 kb on - strand, within Psyr_0284 at 302.907 kb on - strand, within Psyr_0284 at 302.922 kb on - strand, within Psyr_0284 at 302.922 kb on - strand, within Psyr_0284 at 302.931 kb on - strand, within Psyr_0284 at 302.983 kb on + strand, within Psyr_0284 at 303.333 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.367 kb on + strand at 303.367 kb on + strand at 303.367 kb on + strand at 303.367 kb on + strand at 303.368 kb on - strand at 303.368 kb on - strand at 303.368 kb on - strand at 303.383 kb on + strand at 303.384 kb on - strand at 303.384 kb on - strand at 303.389 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.415 kb on - strand at 303.415 kb on - strand at 303.415 kb on - strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.416 kb on + strand at 303.417 kb on - strand at 303.417 kb on - strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.437 kb on - strand at 303.437 kb on - strand at 303.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 300,758 - Psyr_0281 0.82 -1.9 300,758 - Psyr_0281 0.82 -2.8 300,758 - Psyr_0281 0.82 -2.2 300,758 - Psyr_0281 0.82 -4.2 300,822 + Psyr_0281 0.88 +1.5 300,924 + +3.4 300,924 + -1.9 300,924 + -1.2 300,925 - +0.1 300,925 - -0.3 301,119 + Psyr_0282 0.26 -1.2 301,119 + Psyr_0282 0.26 -0.1 301,119 + Psyr_0282 0.26 +1.3 301,119 + Psyr_0282 0.26 -2.6 301,119 + Psyr_0282 0.26 -1.1 301,120 - Psyr_0282 0.26 +3.1 301,120 - Psyr_0282 0.26 +1.9 301,543 + Psyr_0282 0.89 -0.6 301,544 - Psyr_0282 0.89 -1.3 301,544 - Psyr_0282 0.89 +2.7 301,544 - Psyr_0282 0.89 +2.2 301,544 - Psyr_0282 0.89 -2.4 301,631 - -3.0 301,678 - -0.5 301,678 - -1.9 301,678 - +0.8 301,835 + Psyr_0283 0.22 -1.2 301,835 + Psyr_0283 0.22 +0.8 301,835 + Psyr_0283 0.22 -4.2 301,835 + Psyr_0283 0.22 -0.3 301,836 - Psyr_0283 0.22 -2.8 301,836 - Psyr_0283 0.22 -0.9 301,836 - Psyr_0283 0.22 -2.3 301,836 - Psyr_0283 0.22 +0.9 301,836 - Psyr_0283 0.22 +2.7 301,871 - Psyr_0283 0.26 +0.3 302,237 + Psyr_0283 0.74 +0.2 302,237 + Psyr_0283 0.74 -1.0 302,237 + Psyr_0283 0.74 +1.4 302,238 - Psyr_0283 0.74 -0.7 302,238 - Psyr_0283 0.74 -1.5 302,238 - Psyr_0283 0.74 +4.5 302,238 - Psyr_0283 0.74 +2.0 302,238 - Psyr_0283 0.74 -0.1 302,411 + +4.7 302,411 + -3.1 302,412 - -1.9 302,412 - -0.7 302,412 - +0.5 302,412 - -0.4 302,546 + +0.3 302,546 + +0.1 302,546 + -0.3 302,546 + +3.5 302,546 + +1.9 302,546 + -0.7 302,546 + -1.3 302,546 + +3.4 302,546 + -5.0 302,546 + -1.7 302,546 + -0.6 302,546 + -1.8 302,546 + -4.0 302,546 + -3.1 302,546 + -1.4 302,546 + -5.4 302,546 + -0.1 302,546 + -2.2 302,546 + +0.5 302,546 + -2.0 302,547 - -0.1 302,547 - +0.3 302,547 - -0.2 302,547 - -0.1 302,547 - -2.3 302,547 - -0.4 302,547 - +2.2 302,547 - -0.4 302,547 - -1.3 302,547 - +1.5 302,547 - +2.5 302,550 + -0.7 302,550 + +5.1 302,550 + -0.1 302,550 + +2.5 302,550 + -0.6 302,550 + -0.1 302,550 + +5.0 302,550 + -0.1 302,550 + -1.7 302,550 + -2.3 302,550 + +0.7 302,550 + -0.1 302,550 + +2.5 302,551 - -0.3 302,551 - +2.9 302,551 - -0.5 302,551 - -2.3 302,551 - +0.9 302,551 - +1.1 302,551 - +2.2 302,551 - -1.3 302,551 - +3.1 302,551 - -0.6 302,551 - +3.7 302,552 + -0.5 302,552 + -1.7 302,552 + -0.9 302,552 + +1.9 302,552 + -3.7 302,552 + +0.1 302,552 + -0.2 302,552 + +2.9 302,552 + +4.0 302,552 + -2.5 302,552 + -2.3 302,552 + -0.3 302,552 + -1.0 302,552 + -1.4 302,552 + +0.3 302,552 + +3.1 302,552 + -0.1 302,552 + -2.7 302,552 + -0.7 302,552 + -1.8 302,552 + -0.2 302,552 + +0.1 302,552 + -1.8 302,552 + -2.4 302,552 + -1.3 302,552 + -2.0 302,552 + +2.9 302,552 + -0.2 302,552 + -0.5 302,552 + -1.6 302,552 + -1.6 302,552 + -2.5 302,552 + -0.1 302,552 + -2.4 302,552 + +3.4 302,552 + +3.7 302,552 + +2.7 302,552 + -1.5 302,552 + +0.5 302,552 + -2.4 302,552 + -1.2 302,552 + -0.7 302,552 + -1.2 302,552 + -5.1 302,552 + -1.3 302,552 + +3.7 302,552 + -1.2 302,552 + -1.6 302,552 + +0.9 302,552 + -1.9 302,552 + -1.2 302,553 - -0.9 302,553 - +0.8 302,553 - -1.1 302,553 - -1.9 302,553 - -1.6 302,553 - +2.4 302,553 - +0.5 302,553 - -3.9 302,553 - -0.9 302,553 - +3.6 302,553 - +3.1 302,553 - +2.2 302,553 - -0.6 302,553 - -1.4 302,553 - -0.4 302,553 - -2.2 302,553 - -0.1 302,553 - +0.9 302,553 - +3.4 302,553 - +4.5 302,553 - -1.6 302,553 - -1.0 302,553 - -3.3 302,553 - -1.9 302,553 - -0.7 302,553 - -4.2 302,553 - +1.3 302,553 - +1.1 302,553 - -2.4 302,553 - -0.6 302,553 - +3.2 302,553 - -1.0 302,553 - -0.3 302,553 - +2.9 302,553 - +2.5 302,553 - +4.0 302,553 - -0.6 302,553 - -1.0 302,553 - +0.6 302,553 - +3.1 302,553 - -1.6 302,553 - +1.5 302,553 - -1.7 302,553 - -1.8 302,553 - -0.3 302,553 - -2.0 302,553 - +3.2 302,612 - +0.4 302,612 - -2.2 302,681 - +0.8 302,681 - -2.2 302,681 - +0.6 302,681 - -1.0 302,752 - Psyr_0284 0.10 -0.4 302,813 + Psyr_0284 0.20 +2.9 302,813 + Psyr_0284 0.20 -0.2 302,814 - Psyr_0284 0.20 -0.5 302,814 - Psyr_0284 0.20 -2.1 302,814 - Psyr_0284 0.20 -1.2 302,814 - Psyr_0284 0.20 -3.9 302,814 - Psyr_0284 0.20 -1.0 302,814 - Psyr_0284 0.20 +1.5 302,906 + Psyr_0284 0.35 -2.4 302,906 + Psyr_0284 0.35 +1.5 302,906 + Psyr_0284 0.35 -3.0 302,907 - Psyr_0284 0.35 -1.6 302,907 - Psyr_0284 0.35 +3.2 302,922 - Psyr_0284 0.37 -0.1 302,922 - Psyr_0284 0.37 -1.0 302,931 - Psyr_0284 0.39 -1.9 302,983 + Psyr_0284 0.47 +0.3 303,333 + +0.6 303,365 + -0.5 303,365 + -1.7 303,365 + +1.3 303,365 + +0.7 303,365 + +1.6 303,365 + -0.9 303,365 + +2.5 303,365 + +1.9 303,365 + -2.8 303,365 + -0.4 303,365 + -1.4 303,365 + -1.0 303,365 + -1.3 303,365 + +3.5 303,365 + +4.2 303,366 - +1.9 303,366 - -0.4 303,366 - -0.7 303,366 - +1.5 303,366 - +3.1 303,366 - -0.7 303,366 - -0.4 303,366 - +3.5 303,366 - +2.5 303,367 + -0.9 303,367 + +0.1 303,367 + -0.3 303,367 + +0.1 303,368 - -2.1 303,368 - +4.0 303,368 - +2.7 303,383 + +3.1 303,384 - +2.2 303,384 - -1.7 303,389 + +1.9 303,414 + +4.6 303,414 + -2.6 303,414 + -0.2 303,415 - -2.1 303,415 - +1.5 303,415 - +2.5 303,416 + +4.5 303,416 + -0.8 303,416 + -1.5 303,416 + +1.9 303,416 + -0.0 303,417 - +1.3 303,417 - -3.5 303,436 + +1.4 303,436 + +0.5 303,436 + -0.9 303,436 + -2.0 303,437 - -1.4 303,437 - -2.4 303,437 - -1.8
Or see this region's nucleotide sequence