Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0244

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0242 and Psyr_0243 are separated by 81 nucleotidesPsyr_0243 and Psyr_0244 are separated by 116 nucleotidesPsyr_0244 and Psyr_0245 are separated by 271 nucleotides Psyr_0242: Psyr_0242 - Protein of unknown function DUF962, at 255,189 to 255,713 _0242 Psyr_0243: Psyr_0243 - cyclic nucleotide-binding protein, at 255,795 to 256,505 _0243 Psyr_0244: Psyr_0244 - extracellular solute-binding protein, family 1, at 256,622 to 257,623 _0244 Psyr_0245: Psyr_0245 - Binding-protein-dependent transport systems inner membrane component, at 257,895 to 259,511 _0245 Position (kb) 256 257 258Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 255.653 kb on + strand, within Psyr_0242at 255.654 kb on - strand, within Psyr_0242at 255.673 kb on + strandat 255.674 kb on - strandat 255.714 kb on + strandat 255.714 kb on + strandat 255.718 kb on - strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.838 kb on - strandat 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 256.167 kb on + strand, within Psyr_0243at 256.387 kb on + strand, within Psyr_0243at 256.388 kb on - strand, within Psyr_0243at 256.388 kb on - strand, within Psyr_0243at 256.569 kb on - strandat 256.665 kb on + strandat 256.666 kb on - strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.707 kb on - strandat 256.707 kb on - strandat 256.707 kb on - strandat 256.707 kb on - strandat 256.751 kb on + strand, within Psyr_0244at 256.751 kb on + strand, within Psyr_0244at 256.752 kb on - strand, within Psyr_0244at 256.752 kb on - strand, within Psyr_0244at 256.901 kb on - strand, within Psyr_0244at 256.953 kb on - strand, within Psyr_0244at 257.009 kb on + strand, within Psyr_0244at 257.010 kb on - strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.049 kb on - strand, within Psyr_0244at 257.049 kb on - strand, within Psyr_0244at 257.049 kb on - strand, within Psyr_0244at 257.111 kb on + strand, within Psyr_0244at 257.111 kb on + strand, within Psyr_0244at 257.111 kb on + strand, within Psyr_0244at 257.112 kb on - strand, within Psyr_0244at 257.112 kb on - strand, within Psyr_0244at 257.112 kb on - strand, within Psyr_0244at 257.112 kb on - strand, within Psyr_0244at 257.132 kb on - strand, within Psyr_0244at 257.280 kb on - strand, within Psyr_0244at 257.282 kb on + strand, within Psyr_0244at 257.282 kb on + strand, within Psyr_0244at 257.282 kb on + strand, within Psyr_0244at 257.283 kb on - strand, within Psyr_0244at 257.283 kb on - strand, within Psyr_0244at 257.283 kb on - strand, within Psyr_0244at 257.285 kb on + strand, within Psyr_0244at 257.285 kb on + strand, within Psyr_0244at 257.285 kb on + strand, within Psyr_0244at 257.285 kb on + strand, within Psyr_0244at 257.285 kb on - strand, within Psyr_0244at 257.286 kb on - strand, within Psyr_0244at 257.393 kb on + strand, within Psyr_0244at 257.393 kb on + strand, within Psyr_0244at 257.393 kb on + strand, within Psyr_0244at 257.393 kb on + strand, within Psyr_0244at 257.393 kb on + strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.626 kb on + strandat 257.626 kb on + strandat 257.626 kb on + strandat 257.626 kb on + strandat 257.626 kb on + strandat 257.627 kb on - strandat 257.627 kb on - strandat 257.627 kb on - strandat 257.627 kb on - strandat 257.655 kb on - strandat 257.655 kb on - strandat 257.655 kb on - strandat 257.655 kb on - strandat 257.670 kb on + strandat 257.671 kb on - strandat 257.686 kb on - strandat 257.728 kb on - strandat 257.763 kb on + strandat 257.763 kb on + strandat 257.763 kb on + strandat 257.861 kb on + strandat 257.922 kb on + strandat 258.007 kb on + strandat 258.007 kb on + strandat 258.007 kb on + strandat 258.007 kb on + strandat 258.007 kb on + strandat 258.008 kb on - strandat 258.008 kb on - strandat 258.008 kb on - strandat 258.008 kb on - strandat 258.008 kb on - strandat 258.053 kb on + strandat 258.053 kb on + strandat 258.053 kb on + strandat 258.053 kb on + strandat 258.053 kb on + strandat 258.192 kb on + strand, within Psyr_0245at 258.192 kb on + strand, within Psyr_0245at 258.192 kb on + strand, within Psyr_0245at 258.193 kb on - strand, within Psyr_0245at 258.193 kb on - strand, within Psyr_0245at 258.193 kb on - strand, within Psyr_0245at 258.336 kb on + strand, within Psyr_0245at 258.342 kb on + strand, within Psyr_0245at 258.342 kb on + strand, within Psyr_0245at 258.342 kb on + strand, within Psyr_0245at 258.342 kb on + strand, within Psyr_0245at 258.342 kb on + strand, within Psyr_0245at 258.343 kb on - strand, within Psyr_0245at 258.348 kb on + strand, within Psyr_0245at 258.348 kb on + strand, within Psyr_0245at 258.349 kb on - strand, within Psyr_0245at 258.349 kb on - strand, within Psyr_0245at 258.349 kb on - strand, within Psyr_0245at 258.564 kb on + strand, within Psyr_0245at 258.564 kb on + strand, within Psyr_0245at 258.564 kb on + strand, within Psyr_0245at 258.564 kb on + strand, within Psyr_0245at 258.564 kb on + strand, within Psyr_0245at 258.564 kb on + strand, within Psyr_0245at 258.564 kb on + strand, within Psyr_0245at 258.564 kb on + strand, within Psyr_0245at 258.565 kb on - strand, within Psyr_0245at 258.565 kb on - strand, within Psyr_0245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
255,653 + Psyr_0242 0.88 -1.1
255,654 - Psyr_0242 0.89 +0.4
255,673 + +2.0
255,674 - -1.9
255,714 + +2.3
255,714 + -0.2
255,718 - -0.8
255,760 + +2.5
255,760 + -0.4
255,760 + +2.0
255,760 + -0.6
255,838 - -0.0
255,954 + Psyr_0243 0.22 +3.5
255,954 + Psyr_0243 0.22 -0.0
255,954 + Psyr_0243 0.22 +2.3
255,954 + Psyr_0243 0.22 -0.0
255,954 + Psyr_0243 0.22 +0.4
255,955 - Psyr_0243 0.23 +0.3
255,955 - Psyr_0243 0.23 +3.8
255,955 - Psyr_0243 0.23 +1.5
255,955 - Psyr_0243 0.23 +0.0
255,955 - Psyr_0243 0.23 -0.2
255,955 - Psyr_0243 0.23 +2.3
255,955 - Psyr_0243 0.23 +1.5
256,167 + Psyr_0243 0.52 +4.0
256,387 + Psyr_0243 0.83 +0.1
256,388 - Psyr_0243 0.83 +0.8
256,388 - Psyr_0243 0.83 -0.5
256,569 - +5.1
256,665 + +2.0
256,666 - +0.4
256,706 + -2.0
256,706 + -4.0
256,706 + -1.4
256,706 + -1.6
256,706 + -4.7
256,706 + -1.2
256,706 + -0.0
256,706 + -1.8
256,706 + +3.4
256,706 + +2.3
256,707 - -4.9
256,707 - -1.2
256,707 - +2.8
256,707 - -3.7
256,751 + Psyr_0244 0.13 +2.3
256,751 + Psyr_0244 0.13 -2.1
256,752 - Psyr_0244 0.13 -2.3
256,752 - Psyr_0244 0.13 +2.0
256,901 - Psyr_0244 0.28 -1.4
256,953 - Psyr_0244 0.33 -0.0
257,009 + Psyr_0244 0.39 -0.3
257,010 - Psyr_0244 0.39 -0.0
257,048 + Psyr_0244 0.43 +0.3
257,048 + Psyr_0244 0.43 -2.7
257,048 + Psyr_0244 0.43 +0.1
257,048 + Psyr_0244 0.43 -0.9
257,048 + Psyr_0244 0.43 -0.1
257,048 + Psyr_0244 0.43 -1.2
257,049 - Psyr_0244 0.43 -0.9
257,049 - Psyr_0244 0.43 -3.6
257,049 - Psyr_0244 0.43 -2.6
257,111 + Psyr_0244 0.49 +2.0
257,111 + Psyr_0244 0.49 -0.6
257,111 + Psyr_0244 0.49 +3.0
257,112 - Psyr_0244 0.49 +3.7
257,112 - Psyr_0244 0.49 -0.1
257,112 - Psyr_0244 0.49 +1.0
257,112 - Psyr_0244 0.49 -2.7
257,132 - Psyr_0244 0.51 +3.5
257,280 - Psyr_0244 0.66 +2.5
257,282 + Psyr_0244 0.66 +2.0
257,282 + Psyr_0244 0.66 -0.0
257,282 + Psyr_0244 0.66 +0.2
257,283 - Psyr_0244 0.66 -0.0
257,283 - Psyr_0244 0.66 +1.0
257,283 - Psyr_0244 0.66 -0.9
257,285 + Psyr_0244 0.66 +1.5
257,285 + Psyr_0244 0.66 +1.0
257,285 + Psyr_0244 0.66 +1.7
257,285 + Psyr_0244 0.66 -0.9
257,285 - Psyr_0244 0.66 +0.1
257,286 - Psyr_0244 0.66 -0.0
257,393 + Psyr_0244 0.77 -2.0
257,393 + Psyr_0244 0.77 -2.0
257,393 + Psyr_0244 0.77 +3.1
257,393 + Psyr_0244 0.77 -1.2
257,393 + Psyr_0244 0.77 +0.0
257,394 - Psyr_0244 0.77 -1.4
257,394 - Psyr_0244 0.77 -4.3
257,394 - Psyr_0244 0.77 +0.7
257,394 - Psyr_0244 0.77 -0.0
257,394 - Psyr_0244 0.77 -1.4
257,394 - Psyr_0244 0.77 +3.7
257,394 - Psyr_0244 0.77 +2.9
257,626 + -0.5
257,626 + -0.7
257,626 + -1.0
257,626 + +1.0
257,626 + -0.0
257,627 - +1.9
257,627 - +2.3
257,627 - -0.9
257,627 - -2.9
257,655 - -0.9
257,655 - -0.0
257,655 - +0.1
257,655 - -0.5
257,670 + +2.3
257,671 - +2.3
257,686 - +0.1
257,728 - -1.5
257,763 + +2.0
257,763 + -2.4
257,763 + -1.8
257,861 + -0.7
257,922 + -1.6
258,007 + +3.5
258,007 + +1.4
258,007 + -0.3
258,007 + -0.3
258,007 + -1.9
258,008 - -0.1
258,008 - -0.5
258,008 - -1.4
258,008 - -0.8
258,008 - +2.3
258,053 + +0.1
258,053 + -2.8
258,053 + -1.6
258,053 + -0.6
258,053 + -5.5
258,192 + Psyr_0245 0.18 +4.3
258,192 + Psyr_0245 0.18 -2.0
258,192 + Psyr_0245 0.18 -2.0
258,193 - Psyr_0245 0.18 -0.1
258,193 - Psyr_0245 0.18 +2.3
258,193 - Psyr_0245 0.18 +0.9
258,336 + Psyr_0245 0.27 +2.9
258,342 + Psyr_0245 0.28 -0.6
258,342 + Psyr_0245 0.28 -1.8
258,342 + Psyr_0245 0.28 -2.6
258,342 + Psyr_0245 0.28 -0.1
258,342 + Psyr_0245 0.28 -2.1
258,343 - Psyr_0245 0.28 +0.9
258,348 + Psyr_0245 0.28 +1.6
258,348 + Psyr_0245 0.28 +0.4
258,349 - Psyr_0245 0.28 -0.1
258,349 - Psyr_0245 0.28 +0.3
258,349 - Psyr_0245 0.28 +4.6
258,564 + Psyr_0245 0.41 -1.6
258,564 + Psyr_0245 0.41 -2.1
258,564 + Psyr_0245 0.41 -0.1
258,564 + Psyr_0245 0.41 -0.8
258,564 + Psyr_0245 0.41 +2.3
258,564 + Psyr_0245 0.41 +1.1
258,564 + Psyr_0245 0.41 -1.9
258,564 + Psyr_0245 0.41 -2.7
258,565 - Psyr_0245 0.41 -3.5
258,565 - Psyr_0245 0.41 +2.8

Or see this region's nucleotide sequence