Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0230 and Psyr_0231 are separated by 175 nucleotides Psyr_0231 and Psyr_0232 are separated by 2 nucleotides
Psyr_0230: Psyr_0230 - transcriptional regulator, GntR family, at 244,835 to 246,256
_0230
Psyr_0231: Psyr_0231 - conserved hypothetical protein, at 246,432 to 246,683
_0231
Psyr_0232: Psyr_0232 - gamma-glutamylputrescine oxidase, at 246,686 to 247,999
_0232
Position (kb)
246
247 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 245.490 kb on + strand, within Psyr_0230 at 245.490 kb on + strand, within Psyr_0230 at 245.490 kb on + strand, within Psyr_0230 at 245.491 kb on - strand, within Psyr_0230 at 245.491 kb on - strand, within Psyr_0230 at 245.491 kb on - strand, within Psyr_0230 at 245.820 kb on + strand, within Psyr_0230 at 245.820 kb on + strand, within Psyr_0230 at 245.821 kb on - strand, within Psyr_0230 at 245.835 kb on + strand, within Psyr_0230 at 245.995 kb on + strand, within Psyr_0230 at 246.067 kb on - strand, within Psyr_0230 at 246.137 kb on - strand at 246.137 kb on - strand at 246.199 kb on - strand at 246.199 kb on - strand at 246.199 kb on - strand at 246.246 kb on + strand at 246.246 kb on + strand at 246.246 kb on + strand at 246.246 kb on + strand at 246.246 kb on + strand at 246.247 kb on - strand at 246.261 kb on + strand at 246.310 kb on - strand at 246.311 kb on + strand at 246.312 kb on - strand at 246.312 kb on - strand at 246.312 kb on - strand at 246.350 kb on + strand at 246.351 kb on - strand at 246.562 kb on - strand, within Psyr_0231 at 246.562 kb on - strand, within Psyr_0231 at 246.562 kb on - strand, within Psyr_0231 at 246.876 kb on + strand, within Psyr_0232 at 246.876 kb on + strand, within Psyr_0232 at 246.877 kb on - strand, within Psyr_0232 at 246.877 kb on - strand, within Psyr_0232 at 246.888 kb on + strand, within Psyr_0232 at 246.888 kb on + strand, within Psyr_0232 at 246.888 kb on + strand, within Psyr_0232 at 246.889 kb on - strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.920 kb on + strand, within Psyr_0232 at 246.921 kb on - strand, within Psyr_0232 at 247.026 kb on + strand, within Psyr_0232 at 247.026 kb on + strand, within Psyr_0232 at 247.026 kb on + strand, within Psyr_0232 at 247.027 kb on - strand, within Psyr_0232 at 247.027 kb on - strand, within Psyr_0232 at 247.027 kb on - strand, within Psyr_0232 at 247.107 kb on + strand, within Psyr_0232 at 247.107 kb on + strand, within Psyr_0232 at 247.108 kb on - strand, within Psyr_0232 at 247.108 kb on - strand, within Psyr_0232 at 247.110 kb on + strand, within Psyr_0232 at 247.110 kb on + strand, within Psyr_0232 at 247.111 kb on - strand, within Psyr_0232 at 247.137 kb on - strand, within Psyr_0232 at 247.137 kb on - strand, within Psyr_0232 at 247.203 kb on + strand, within Psyr_0232 at 247.203 kb on + strand, within Psyr_0232 at 247.203 kb on + strand, within Psyr_0232 at 247.203 kb on + strand, within Psyr_0232 at 247.203 kb on + strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.257 kb on + strand, within Psyr_0232 at 247.257 kb on + strand, within Psyr_0232 at 247.310 kb on - strand, within Psyr_0232 at 247.461 kb on + strand, within Psyr_0232
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 245,490 + Psyr_0230 0.46 +0.2 245,490 + Psyr_0230 0.46 +4.4 245,490 + Psyr_0230 0.46 +3.6 245,491 - Psyr_0230 0.46 -3.4 245,491 - Psyr_0230 0.46 -0.5 245,491 - Psyr_0230 0.46 -3.3 245,820 + Psyr_0230 0.69 -0.9 245,820 + Psyr_0230 0.69 -2.0 245,821 - Psyr_0230 0.69 -2.0 245,835 + Psyr_0230 0.70 -0.5 245,995 + Psyr_0230 0.82 +0.4 246,067 - Psyr_0230 0.87 +3.1 246,137 - +4.6 246,137 - +1.5 246,199 - -1.7 246,199 - -2.2 246,199 - -0.2 246,246 + -1.6 246,246 + -0.9 246,246 + -0.2 246,246 + -0.2 246,246 + +0.9 246,247 - -1.6 246,261 + -3.0 246,310 - -0.6 246,311 + -0.8 246,312 - +1.1 246,312 - +1.0 246,312 - -0.9 246,350 + -0.1 246,351 - +2.3 246,562 - Psyr_0231 0.52 -0.1 246,562 - Psyr_0231 0.52 -1.5 246,562 - Psyr_0231 0.52 -2.2 246,876 + Psyr_0232 0.14 -1.4 246,876 + Psyr_0232 0.14 +2.8 246,877 - Psyr_0232 0.15 -3.9 246,877 - Psyr_0232 0.15 -1.0 246,888 + Psyr_0232 0.15 -0.8 246,888 + Psyr_0232 0.15 -1.3 246,888 + Psyr_0232 0.15 -2.0 246,889 - Psyr_0232 0.15 +2.3 246,893 + Psyr_0232 0.16 -0.1 246,893 + Psyr_0232 0.16 +2.8 246,893 + Psyr_0232 0.16 +3.9 246,893 + Psyr_0232 0.16 +0.9 246,893 + Psyr_0232 0.16 -1.8 246,893 + Psyr_0232 0.16 -2.2 246,893 + Psyr_0232 0.16 -0.1 246,894 - Psyr_0232 0.16 -1.1 246,894 - Psyr_0232 0.16 -1.3 246,894 - Psyr_0232 0.16 -0.6 246,894 - Psyr_0232 0.16 -1.8 246,894 - Psyr_0232 0.16 -0.8 246,894 - Psyr_0232 0.16 -0.9 246,894 - Psyr_0232 0.16 -2.5 246,920 + Psyr_0232 0.18 -1.2 246,921 - Psyr_0232 0.18 +0.4 247,026 + Psyr_0232 0.26 +0.9 247,026 + Psyr_0232 0.26 +3.7 247,026 + Psyr_0232 0.26 +2.9 247,027 - Psyr_0232 0.26 +0.1 247,027 - Psyr_0232 0.26 -1.5 247,027 - Psyr_0232 0.26 -0.1 247,107 + Psyr_0232 0.32 -0.1 247,107 + Psyr_0232 0.32 +2.7 247,108 - Psyr_0232 0.32 -1.6 247,108 - Psyr_0232 0.32 -3.1 247,110 + Psyr_0232 0.32 +4.3 247,110 + Psyr_0232 0.32 +4.2 247,111 - Psyr_0232 0.32 -2.1 247,137 - Psyr_0232 0.34 -0.6 247,137 - Psyr_0232 0.34 +3.8 247,203 + Psyr_0232 0.39 -0.4 247,203 + Psyr_0232 0.39 -1.1 247,203 + Psyr_0232 0.39 +3.4 247,203 + Psyr_0232 0.39 +4.3 247,203 + Psyr_0232 0.39 -2.8 247,204 - Psyr_0232 0.39 -1.8 247,204 - Psyr_0232 0.39 +2.3 247,204 - Psyr_0232 0.39 +3.8 247,204 - Psyr_0232 0.39 +3.7 247,204 - Psyr_0232 0.39 -0.3 247,204 - Psyr_0232 0.39 +1.5 247,204 - Psyr_0232 0.39 -2.1 247,204 - Psyr_0232 0.39 +2.7 247,204 - Psyr_0232 0.39 -0.3 247,257 + Psyr_0232 0.43 -0.5 247,257 + Psyr_0232 0.43 +1.1 247,310 - Psyr_0232 0.47 +0.7 247,461 + Psyr_0232 0.59 +0.9
Or see this region's nucleotide sequence