Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0170 and Psyr_0171 are separated by 167 nucleotides Psyr_0171 and Psyr_0172 are separated by 16 nucleotides Psyr_0172 and Psyr_0173 overlap by 4 nucleotides
Psyr_0170: Psyr_0170 - heat shock protein Hsp15, at 185,020 to 185,427
_0170
Psyr_0171: Psyr_0171 - EAL, at 185,595 to 186,377
_0171
Psyr_0172: Psyr_0172 - Protein of unknown function DUF785, at 186,394 to 186,870
_0172
Psyr_0173: Psyr_0173 - SSU ribosomal protein S6P modification protein, at 186,867 to 187,772
_0173
Position (kb) 186
187 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 185.445 kb on - strand at 185.527 kb on - strand at 185.554 kb on + strand at 185.566 kb on + strand at 185.682 kb on + strand, within Psyr_0171 at 185.682 kb on + strand, within Psyr_0171 at 185.682 kb on + strand, within Psyr_0171 at 185.683 kb on - strand, within Psyr_0171 at 185.921 kb on + strand, within Psyr_0171 at 186.230 kb on + strand, within Psyr_0171 at 186.230 kb on + strand, within Psyr_0171 at 186.231 kb on - strand, within Psyr_0171 at 186.231 kb on - strand, within Psyr_0171 at 186.257 kb on + strand, within Psyr_0171 at 186.257 kb on + strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.293 kb on - strand, within Psyr_0171 at 186.309 kb on + strand at 186.309 kb on + strand at 186.309 kb on + strand at 186.310 kb on - strand at 186.310 kb on - strand at 186.382 kb on + strand at 186.382 kb on + strand at 186.382 kb on + strand at 186.383 kb on - strand at 186.383 kb on - strand at 186.639 kb on + strand, within Psyr_0172 at 186.639 kb on + strand, within Psyr_0172 at 186.670 kb on + strand, within Psyr_0172 at 186.670 kb on + strand, within Psyr_0172 at 186.670 kb on + strand, within Psyr_0172 at 186.670 kb on + strand, within Psyr_0172 at 186.671 kb on - strand, within Psyr_0172 at 186.671 kb on - strand, within Psyr_0172 at 186.671 kb on - strand, within Psyr_0172 at 186.671 kb on - strand, within Psyr_0172 at 186.706 kb on - strand, within Psyr_0172 at 186.706 kb on - strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.849 kb on + strand at 186.849 kb on + strand at 186.849 kb on + strand at 186.849 kb on + strand at 186.849 kb on + strand at 186.850 kb on - strand at 186.903 kb on + strand at 186.903 kb on + strand at 186.903 kb on + strand at 186.904 kb on - strand at 186.904 kb on - strand at 186.904 kb on - strand at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 187.081 kb on - strand, within Psyr_0173 at 187.081 kb on - strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.843 kb on - strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 185,445 - -3.2 185,527 - -2.4 185,554 + +2.5 185,566 + -1.2 185,682 + Psyr_0171 0.11 -0.3 185,682 + Psyr_0171 0.11 -4.0 185,682 + Psyr_0171 0.11 -1.2 185,683 - Psyr_0171 0.11 -0.1 185,921 + Psyr_0171 0.42 -0.8 186,230 + Psyr_0171 0.81 -2.8 186,230 + Psyr_0171 0.81 -1.0 186,231 - Psyr_0171 0.81 +3.0 186,231 - Psyr_0171 0.81 -1.7 186,257 + Psyr_0171 0.85 -2.6 186,257 + Psyr_0171 0.85 +3.4 186,258 - Psyr_0171 0.85 +2.3 186,258 - Psyr_0171 0.85 -3.2 186,258 - Psyr_0171 0.85 +1.3 186,258 - Psyr_0171 0.85 +2.6 186,258 - Psyr_0171 0.85 -0.6 186,258 - Psyr_0171 0.85 +0.9 186,293 - Psyr_0171 0.89 -3.2 186,309 + +0.9 186,309 + +1.5 186,309 + -2.5 186,310 - -0.7 186,310 - -1.1 186,382 + -3.1 186,382 + +0.5 186,382 + -1.3 186,383 - -1.2 186,383 - +4.3 186,639 + Psyr_0172 0.51 -3.1 186,639 + Psyr_0172 0.51 -0.7 186,670 + Psyr_0172 0.58 +2.3 186,670 + Psyr_0172 0.58 +2.7 186,670 + Psyr_0172 0.58 +3.4 186,670 + Psyr_0172 0.58 -0.1 186,671 - Psyr_0172 0.58 -1.4 186,671 - Psyr_0172 0.58 +2.9 186,671 - Psyr_0172 0.58 -3.5 186,671 - Psyr_0172 0.58 -0.8 186,706 - Psyr_0172 0.65 -2.9 186,706 - Psyr_0172 0.65 +0.9 186,817 + Psyr_0172 0.89 -1.1 186,817 + Psyr_0172 0.89 +2.7 186,817 + Psyr_0172 0.89 +0.3 186,817 + Psyr_0172 0.89 +0.9 186,817 + Psyr_0172 0.89 +2.1 186,817 + Psyr_0172 0.89 -1.8 186,817 + Psyr_0172 0.89 -0.3 186,817 + Psyr_0172 0.89 +0.7 186,817 + Psyr_0172 0.89 +2.3 186,817 + Psyr_0172 0.89 -0.3 186,818 - Psyr_0172 0.89 -0.5 186,818 - Psyr_0172 0.89 +0.5 186,818 - Psyr_0172 0.89 -2.9 186,818 - Psyr_0172 0.89 +1.8 186,818 - Psyr_0172 0.89 +0.2 186,818 - Psyr_0172 0.89 -0.2 186,818 - Psyr_0172 0.89 -0.4 186,821 + Psyr_0172 0.90 -1.6 186,821 + Psyr_0172 0.90 +3.8 186,821 + Psyr_0172 0.90 -0.1 186,821 + Psyr_0172 0.90 +0.8 186,821 + Psyr_0172 0.90 -2.7 186,821 + Psyr_0172 0.90 -2.5 186,821 + Psyr_0172 0.90 -0.1 186,822 - Psyr_0172 0.90 -0.1 186,822 - Psyr_0172 0.90 -0.1 186,822 - Psyr_0172 0.90 +2.3 186,822 - Psyr_0172 0.90 -1.3 186,822 - Psyr_0172 0.90 +0.8 186,822 - Psyr_0172 0.90 +2.3 186,822 - Psyr_0172 0.90 -1.1 186,849 + -2.5 186,849 + -0.6 186,849 + -0.4 186,849 + -3.3 186,849 + -0.4 186,850 - -2.9 186,903 + -2.1 186,903 + -0.9 186,903 + +2.3 186,904 - -4.5 186,904 - -2.5 186,904 - +0.2 186,978 + Psyr_0173 0.12 -0.1 186,978 + Psyr_0173 0.12 +0.3 186,978 + Psyr_0173 0.12 +3.1 186,978 + Psyr_0173 0.12 +1.9 186,978 + Psyr_0173 0.12 +2.7 186,978 + Psyr_0173 0.12 -2.6 186,978 + Psyr_0173 0.12 +0.0 186,978 + Psyr_0173 0.12 -0.2 186,978 + Psyr_0173 0.12 -2.5 186,979 - Psyr_0173 0.12 -0.1 186,979 - Psyr_0173 0.12 +1.9 186,979 - Psyr_0173 0.12 +2.9 186,979 - Psyr_0173 0.12 -1.6 186,979 - Psyr_0173 0.12 -1.5 186,979 - Psyr_0173 0.12 +2.9 186,979 - Psyr_0173 0.12 +1.4 186,980 + Psyr_0173 0.12 -1.0 186,980 + Psyr_0173 0.12 +0.2 186,980 + Psyr_0173 0.12 -1.1 186,981 - Psyr_0173 0.13 +1.9 186,981 - Psyr_0173 0.13 -2.2 186,981 - Psyr_0173 0.13 +3.1 186,981 - Psyr_0173 0.13 -0.4 186,981 - Psyr_0173 0.13 -0.1 186,981 - Psyr_0173 0.13 +0.5 186,981 - Psyr_0173 0.13 +0.5 187,081 - Psyr_0173 0.24 +2.7 187,081 - Psyr_0173 0.24 +4.5 187,401 + Psyr_0173 0.59 +1.9 187,401 + Psyr_0173 0.59 -2.5 187,401 + Psyr_0173 0.59 -0.2 187,401 + Psyr_0173 0.59 -1.4 187,401 + Psyr_0173 0.59 -4.9 187,401 + Psyr_0173 0.59 +1.9 187,401 + Psyr_0173 0.59 +2.5 187,401 + Psyr_0173 0.59 +2.9 187,401 + Psyr_0173 0.59 +0.9 187,401 + Psyr_0173 0.59 -1.6 187,402 - Psyr_0173 0.59 -0.1 187,402 - Psyr_0173 0.59 -2.2 187,402 - Psyr_0173 0.59 -4.1 187,402 - Psyr_0173 0.59 +2.3 187,402 - Psyr_0173 0.59 +0.2 187,402 - Psyr_0173 0.59 -1.6 187,402 - Psyr_0173 0.59 -1.1 187,402 - Psyr_0173 0.59 -0.3 187,843 - +1.9 187,847 + +1.9 187,847 + -2.9 187,847 + -0.8 187,847 + -3.5 187,847 + -2.5 187,847 + -2.3 187,847 + -2.1 187,847 + +2.3 187,847 + -0.8 187,847 + +0.4 187,847 + -3.7 187,848 - +2.3 187,848 - -1.9 187,848 - +3.6 187,848 - -2.2 187,848 - +2.5 187,848 - -2.8 187,848 - +0.9 187,848 - -1.8 187,848 - -0.2 187,848 - -0.8 187,856 + -3.1
Or see this region's nucleotide sequence