Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0112 and Psyr_0113 are separated by 736 nucleotides Psyr_0113 and Psyr_0114 are separated by 338 nucleotides Psyr_0114 and Psyr_0115 are separated by 142 nucleotides
Psyr_0112: Psyr_0112 - hypothetical protein, at 122,810 to 123,193
_0112
Psyr_0113: Psyr_0113 - conserved hypothetical protein, at 123,930 to 124,664
_0113
Psyr_0114: Psyr_0114 - hypothetical protein, at 125,003 to 125,455
_0114
Psyr_0115: Psyr_0115 - membrane protein, putative, at 125,598 to 126,362
_0115
Position (kb)
123
124
125 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 122.954 kb on + strand, within Psyr_0112 at 122.954 kb on + strand, within Psyr_0112 at 122.998 kb on - strand, within Psyr_0112 at 122.998 kb on - strand, within Psyr_0112 at 123.045 kb on - strand, within Psyr_0112 at 123.045 kb on - strand, within Psyr_0112 at 123.045 kb on - strand, within Psyr_0112 at 123.045 kb on - strand, within Psyr_0112 at 123.054 kb on - strand, within Psyr_0112 at 123.068 kb on + strand, within Psyr_0112 at 123.068 kb on + strand, within Psyr_0112 at 123.068 kb on + strand, within Psyr_0112 at 123.068 kb on + strand, within Psyr_0112 at 123.069 kb on - strand, within Psyr_0112 at 123.149 kb on - strand, within Psyr_0112 at 123.149 kb on - strand, within Psyr_0112 at 123.193 kb on + strand at 123.193 kb on + strand at 123.193 kb on + strand at 123.193 kb on + strand at 123.193 kb on + strand at 123.193 kb on + strand at 123.193 kb on + strand at 123.193 kb on + strand at 123.194 kb on - strand at 123.194 kb on - strand at 123.194 kb on - strand at 123.201 kb on + strand at 123.201 kb on + strand at 123.201 kb on + strand at 123.202 kb on - strand at 123.202 kb on - strand at 123.202 kb on - strand at 123.220 kb on + strand at 123.220 kb on + strand at 123.220 kb on + strand at 123.220 kb on + strand at 123.221 kb on - strand at 123.221 kb on - strand at 123.221 kb on - strand at 123.221 kb on - strand at 123.233 kb on + strand at 123.233 kb on + strand at 123.234 kb on - strand at 123.234 kb on - strand at 123.234 kb on - strand at 123.234 kb on - strand at 123.254 kb on + strand at 123.254 kb on + strand at 123.255 kb on - strand at 123.255 kb on - strand at 123.255 kb on - strand at 123.255 kb on - strand at 123.255 kb on - strand at 123.283 kb on - strand at 123.283 kb on - strand at 123.343 kb on + strand at 123.343 kb on + strand at 123.343 kb on + strand at 123.344 kb on - strand at 123.344 kb on - strand at 123.344 kb on - strand at 123.344 kb on - strand at 123.375 kb on + strand at 123.396 kb on - strand at 123.415 kb on - strand at 123.415 kb on - strand at 123.513 kb on + strand at 123.536 kb on - strand at 123.617 kb on - strand at 123.650 kb on + strand at 123.650 kb on + strand at 123.650 kb on + strand at 123.650 kb on + strand at 123.651 kb on - strand at 123.651 kb on - strand at 123.730 kb on + strand at 123.731 kb on - strand at 123.898 kb on + strand at 123.899 kb on - strand at 123.899 kb on - strand at 123.932 kb on - strand at 123.956 kb on + strand at 123.956 kb on + strand at 123.957 kb on - strand at 123.957 kb on - strand at 123.957 kb on - strand at 123.957 kb on - strand at 123.957 kb on - strand at 123.972 kb on + strand at 123.972 kb on + strand at 123.973 kb on - strand at 123.998 kb on - strand at 124.047 kb on - strand, within Psyr_0113 at 124.242 kb on + strand, within Psyr_0113 at 124.243 kb on - strand, within Psyr_0113 at 124.265 kb on - strand, within Psyr_0113 at 124.424 kb on + strand, within Psyr_0113 at 124.425 kb on - strand, within Psyr_0113 at 124.425 kb on - strand, within Psyr_0113 at 124.425 kb on - strand, within Psyr_0113 at 124.425 kb on - strand, within Psyr_0113 at 124.425 kb on - strand, within Psyr_0113 at 124.425 kb on - strand, within Psyr_0113 at 124.459 kb on + strand, within Psyr_0113 at 124.519 kb on + strand, within Psyr_0113 at 124.520 kb on - strand, within Psyr_0113 at 124.542 kb on + strand, within Psyr_0113 at 124.542 kb on + strand, within Psyr_0113 at 124.543 kb on - strand, within Psyr_0113 at 124.543 kb on - strand, within Psyr_0113 at 124.557 kb on + strand, within Psyr_0113 at 124.557 kb on + strand, within Psyr_0113 at 124.557 kb on + strand, within Psyr_0113 at 124.599 kb on - strand at 124.612 kb on + strand at 124.612 kb on + strand at 124.612 kb on + strand at 124.612 kb on + strand at 124.612 kb on + strand at 124.613 kb on - strand at 124.613 kb on - strand at 124.613 kb on - strand at 124.629 kb on + strand at 124.759 kb on - strand at 124.765 kb on - strand at 124.765 kb on - strand at 124.765 kb on - strand at 124.765 kb on - strand at 124.765 kb on - strand at 124.795 kb on - strand at 124.798 kb on + strand at 124.798 kb on + strand at 124.799 kb on - strand at 124.799 kb on - strand at 124.834 kb on + strand at 124.839 kb on + strand at 124.862 kb on - strand at 124.864 kb on + strand at 124.872 kb on + strand at 124.872 kb on + strand at 124.872 kb on + strand at 124.872 kb on + strand at 124.874 kb on + strand at 124.874 kb on + strand at 124.874 kb on + strand at 124.874 kb on + strand at 124.874 kb on + strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.875 kb on - strand at 124.897 kb on + strand at 124.898 kb on - strand at 124.917 kb on + strand at 124.917 kb on + strand at 124.917 kb on + strand at 124.918 kb on - strand at 124.918 kb on - strand at 124.918 kb on - strand at 124.918 kb on - strand at 124.969 kb on + strand at 124.970 kb on - strand at 124.970 kb on - strand at 125.044 kb on + strand at 125.068 kb on + strand, within Psyr_0114 at 125.069 kb on - strand, within Psyr_0114 at 125.131 kb on + strand, within Psyr_0114 at 125.131 kb on + strand, within Psyr_0114 at 125.132 kb on - strand, within Psyr_0114 at 125.132 kb on - strand, within Psyr_0114 at 125.154 kb on + strand, within Psyr_0114 at 125.154 kb on + strand, within Psyr_0114 at 125.154 kb on + strand, within Psyr_0114 at 125.154 kb on + strand, within Psyr_0114 at 125.154 kb on + strand, within Psyr_0114 at 125.154 kb on + strand, within Psyr_0114 at 125.154 kb on + strand, within Psyr_0114 at 125.154 kb on + strand, within Psyr_0114 at 125.154 kb on + strand, within Psyr_0114 at 125.154 kb on + strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.155 kb on - strand, within Psyr_0114 at 125.208 kb on - strand, within Psyr_0114 at 125.223 kb on - strand, within Psyr_0114 at 125.223 kb on - strand, within Psyr_0114 at 125.262 kb on + strand, within Psyr_0114 at 125.262 kb on + strand, within Psyr_0114 at 125.263 kb on - strand, within Psyr_0114 at 125.263 kb on - strand, within Psyr_0114 at 125.453 kb on + strand at 125.453 kb on + strand at 125.453 kb on + strand at 125.453 kb on + strand at 125.453 kb on + strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.522 kb on + strand at 125.523 kb on - strand at 125.561 kb on + strand at 125.561 kb on + strand at 125.561 kb on + strand at 125.610 kb on + strand at 125.610 kb on + strand at 125.610 kb on + strand at 125.610 kb on + strand at 125.610 kb on + strand at 125.610 kb on + strand at 125.610 kb on + strand at 125.611 kb on - strand at 125.611 kb on - strand at 125.611 kb on - strand at 125.611 kb on - strand at 125.611 kb on - strand at 125.611 kb on - strand at 125.620 kb on + strand at 125.621 kb on - strand at 125.649 kb on - strand at 125.649 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 122,954 + Psyr_0112 0.38 -2.2 122,954 + Psyr_0112 0.38 -0.1 122,998 - Psyr_0112 0.49 -2.3 122,998 - Psyr_0112 0.49 +0.2 123,045 - Psyr_0112 0.61 +2.7 123,045 - Psyr_0112 0.61 -0.4 123,045 - Psyr_0112 0.61 +3.1 123,045 - Psyr_0112 0.61 +2.7 123,054 - Psyr_0112 0.64 -1.3 123,068 + Psyr_0112 0.67 +2.7 123,068 + Psyr_0112 0.67 +2.2 123,068 + Psyr_0112 0.67 -3.9 123,068 + Psyr_0112 0.67 +0.9 123,069 - Psyr_0112 0.67 -1.0 123,149 - Psyr_0112 0.88 -1.0 123,149 - Psyr_0112 0.88 -0.5 123,193 + -0.6 123,193 + -2.6 123,193 + +0.9 123,193 + -4.1 123,193 + -3.7 123,193 + -4.7 123,193 + +1.5 123,193 + -2.8 123,194 - -3.1 123,194 - +1.2 123,194 - -0.8 123,201 + -1.6 123,201 + -1.4 123,201 + +0.9 123,202 - -2.1 123,202 - -0.7 123,202 - +2.7 123,220 + -1.6 123,220 + -2.0 123,220 + -0.1 123,220 + -2.8 123,221 - -1.0 123,221 - -0.9 123,221 - -4.5 123,221 - -0.7 123,233 + +3.4 123,233 + -1.1 123,234 - +0.9 123,234 - +2.7 123,234 - -0.1 123,234 - -0.7 123,254 + -0.1 123,254 + -3.0 123,255 - -1.8 123,255 - -0.9 123,255 - -0.1 123,255 - -1.1 123,255 - +0.9 123,283 - +0.1 123,283 - -1.5 123,343 + -0.1 123,343 + -3.6 123,343 + -0.1 123,344 - -3.2 123,344 - -1.3 123,344 - +1.9 123,344 - -0.2 123,375 + -3.8 123,396 - -0.1 123,415 - +0.4 123,415 - +0.9 123,513 + -0.1 123,536 - -2.0 123,617 - +1.9 123,650 + -0.1 123,650 + -2.3 123,650 + -1.3 123,650 + -0.8 123,651 - -0.4 123,651 - -1.4 123,730 + +0.7 123,731 - -0.5 123,898 + -2.3 123,899 - +0.9 123,899 - +3.6 123,932 - -0.7 123,956 + -0.1 123,956 + -3.7 123,957 - +1.9 123,957 - -0.1 123,957 - -0.5 123,957 - -1.4 123,957 - -1.8 123,972 + -2.7 123,972 + -0.1 123,973 - -0.7 123,998 - +0.8 124,047 - Psyr_0113 0.16 -1.5 124,242 + Psyr_0113 0.42 -2.0 124,243 - Psyr_0113 0.43 -0.5 124,265 - Psyr_0113 0.46 -3.2 124,424 + Psyr_0113 0.67 -4.5 124,425 - Psyr_0113 0.67 -0.1 124,425 - Psyr_0113 0.67 -4.7 124,425 - Psyr_0113 0.67 -1.8 124,425 - Psyr_0113 0.67 -2.3 124,425 - Psyr_0113 0.67 -1.9 124,425 - Psyr_0113 0.67 +2.2 124,459 + Psyr_0113 0.72 -2.9 124,519 + Psyr_0113 0.80 -6.4 124,520 - Psyr_0113 0.80 +1.5 124,542 + Psyr_0113 0.83 -0.1 124,542 + Psyr_0113 0.83 -4.8 124,543 - Psyr_0113 0.83 -1.7 124,543 - Psyr_0113 0.83 +1.9 124,557 + Psyr_0113 0.85 -2.8 124,557 + Psyr_0113 0.85 -3.9 124,557 + Psyr_0113 0.85 +2.7 124,599 - -1.3 124,612 + -3.1 124,612 + +2.9 124,612 + +0.4 124,612 + -3.4 124,612 + -2.3 124,613 - -2.2 124,613 - -0.1 124,613 - -2.0 124,629 + -0.1 124,759 - -0.4 124,765 - +0.1 124,765 - -0.1 124,765 - +2.5 124,765 - -0.5 124,765 - -4.4 124,795 - -1.2 124,798 + +1.9 124,798 + +2.9 124,799 - -2.4 124,799 - -0.7 124,834 + +4.0 124,839 + +4.4 124,862 - -4.7 124,864 + -2.7 124,872 + -1.5 124,872 + +4.2 124,872 + +1.2 124,872 + -1.7 124,874 + -0.0 124,874 + -1.7 124,874 + -0.2 124,874 + +1.5 124,874 + +1.5 124,875 - -1.1 124,875 - -0.4 124,875 - -3.2 124,875 - -1.1 124,875 - -3.5 124,875 - -1.6 124,875 - -3.1 124,875 - +4.2 124,875 - -1.7 124,875 - -2.5 124,875 - -3.9 124,875 - -1.5 124,875 - -1.8 124,875 - -2.6 124,897 + +4.6 124,898 - -2.2 124,917 + +0.5 124,917 + -1.1 124,917 + -2.3 124,918 - -2.0 124,918 - -1.4 124,918 - -2.0 124,918 - -1.1 124,969 + +3.6 124,970 - -0.1 124,970 - -0.2 125,044 + +0.0 125,068 + Psyr_0114 0.14 -0.8 125,069 - Psyr_0114 0.15 -0.9 125,131 + Psyr_0114 0.28 +0.1 125,131 + Psyr_0114 0.28 +3.8 125,132 - Psyr_0114 0.28 -1.7 125,132 - Psyr_0114 0.28 -0.5 125,154 + Psyr_0114 0.33 -0.1 125,154 + Psyr_0114 0.33 -3.1 125,154 + Psyr_0114 0.33 -0.5 125,154 + Psyr_0114 0.33 +0.0 125,154 + Psyr_0114 0.33 +0.6 125,154 + Psyr_0114 0.33 +2.7 125,154 + Psyr_0114 0.33 +4.2 125,154 + Psyr_0114 0.33 -4.0 125,154 + Psyr_0114 0.33 +3.4 125,154 + Psyr_0114 0.33 -0.2 125,155 - Psyr_0114 0.34 -0.1 125,155 - Psyr_0114 0.34 -0.1 125,155 - Psyr_0114 0.34 -0.9 125,155 - Psyr_0114 0.34 -1.2 125,155 - Psyr_0114 0.34 +4.2 125,155 - Psyr_0114 0.34 -3.4 125,155 - Psyr_0114 0.34 +2.5 125,155 - Psyr_0114 0.34 -2.6 125,155 - Psyr_0114 0.34 -2.9 125,155 - Psyr_0114 0.34 -1.6 125,155 - Psyr_0114 0.34 -3.8 125,155 - Psyr_0114 0.34 -2.5 125,208 - Psyr_0114 0.45 -4.2 125,223 - Psyr_0114 0.49 -2.9 125,223 - Psyr_0114 0.49 +1.9 125,262 + Psyr_0114 0.57 -2.4 125,262 + Psyr_0114 0.57 +0.7 125,263 - Psyr_0114 0.57 -0.3 125,263 - Psyr_0114 0.57 +0.0 125,453 + +2.2 125,453 + -3.1 125,453 + +4.8 125,453 + +4.4 125,453 + +1.9 125,454 - -0.8 125,454 - -2.1 125,522 + +2.7 125,523 - +0.9 125,561 + -4.2 125,561 + +3.4 125,561 + -2.0 125,610 + -0.7 125,610 + +2.2 125,610 + -0.5 125,610 + -0.1 125,610 + -2.1 125,610 + +3.2 125,610 + -1.7 125,611 - -1.0 125,611 - +4.2 125,611 - +0.4 125,611 - +3.8 125,611 - -0.8 125,611 - +0.4 125,620 + +3.5 125,621 - +2.5 125,649 - -0.3 125,649 - -0.2
Or see this region's nucleotide sequence