Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0113

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0112 and Psyr_0113 are separated by 736 nucleotidesPsyr_0113 and Psyr_0114 are separated by 338 nucleotidesPsyr_0114 and Psyr_0115 are separated by 142 nucleotides Psyr_0112: Psyr_0112 - hypothetical protein, at 122,810 to 123,193 _0112 Psyr_0113: Psyr_0113 - conserved hypothetical protein, at 123,930 to 124,664 _0113 Psyr_0114: Psyr_0114 - hypothetical protein, at 125,003 to 125,455 _0114 Psyr_0115: Psyr_0115 - membrane protein, putative, at 125,598 to 126,362 _0115 Position (kb) 123 124 125Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 122.954 kb on + strand, within Psyr_0112at 122.954 kb on + strand, within Psyr_0112at 122.998 kb on - strand, within Psyr_0112at 122.998 kb on - strand, within Psyr_0112at 123.045 kb on - strand, within Psyr_0112at 123.045 kb on - strand, within Psyr_0112at 123.045 kb on - strand, within Psyr_0112at 123.045 kb on - strand, within Psyr_0112at 123.054 kb on - strand, within Psyr_0112at 123.068 kb on + strand, within Psyr_0112at 123.068 kb on + strand, within Psyr_0112at 123.068 kb on + strand, within Psyr_0112at 123.068 kb on + strand, within Psyr_0112at 123.069 kb on - strand, within Psyr_0112at 123.149 kb on - strand, within Psyr_0112at 123.149 kb on - strand, within Psyr_0112at 123.193 kb on + strandat 123.193 kb on + strandat 123.193 kb on + strandat 123.193 kb on + strandat 123.193 kb on + strandat 123.193 kb on + strandat 123.193 kb on + strandat 123.193 kb on + strandat 123.194 kb on - strandat 123.194 kb on - strandat 123.194 kb on - strandat 123.201 kb on + strandat 123.201 kb on + strandat 123.201 kb on + strandat 123.202 kb on - strandat 123.202 kb on - strandat 123.202 kb on - strandat 123.220 kb on + strandat 123.220 kb on + strandat 123.220 kb on + strandat 123.220 kb on + strandat 123.221 kb on - strandat 123.221 kb on - strandat 123.221 kb on - strandat 123.221 kb on - strandat 123.233 kb on + strandat 123.233 kb on + strandat 123.234 kb on - strandat 123.234 kb on - strandat 123.234 kb on - strandat 123.234 kb on - strandat 123.254 kb on + strandat 123.254 kb on + strandat 123.255 kb on - strandat 123.255 kb on - strandat 123.255 kb on - strandat 123.255 kb on - strandat 123.255 kb on - strandat 123.283 kb on - strandat 123.283 kb on - strandat 123.343 kb on + strandat 123.343 kb on + strandat 123.343 kb on + strandat 123.344 kb on - strandat 123.344 kb on - strandat 123.344 kb on - strandat 123.344 kb on - strandat 123.375 kb on + strandat 123.396 kb on - strandat 123.415 kb on - strandat 123.415 kb on - strandat 123.513 kb on + strandat 123.536 kb on - strandat 123.617 kb on - strandat 123.650 kb on + strandat 123.650 kb on + strandat 123.650 kb on + strandat 123.650 kb on + strandat 123.651 kb on - strandat 123.651 kb on - strandat 123.730 kb on + strandat 123.731 kb on - strandat 123.898 kb on + strandat 123.899 kb on - strandat 123.899 kb on - strandat 123.932 kb on - strandat 123.956 kb on + strandat 123.956 kb on + strandat 123.957 kb on - strandat 123.957 kb on - strandat 123.957 kb on - strandat 123.957 kb on - strandat 123.957 kb on - strandat 123.972 kb on + strandat 123.972 kb on + strandat 123.973 kb on - strandat 123.998 kb on - strandat 124.047 kb on - strand, within Psyr_0113at 124.242 kb on + strand, within Psyr_0113at 124.243 kb on - strand, within Psyr_0113at 124.265 kb on - strand, within Psyr_0113at 124.424 kb on + strand, within Psyr_0113at 124.425 kb on - strand, within Psyr_0113at 124.425 kb on - strand, within Psyr_0113at 124.425 kb on - strand, within Psyr_0113at 124.425 kb on - strand, within Psyr_0113at 124.425 kb on - strand, within Psyr_0113at 124.425 kb on - strand, within Psyr_0113at 124.459 kb on + strand, within Psyr_0113at 124.519 kb on + strand, within Psyr_0113at 124.520 kb on - strand, within Psyr_0113at 124.542 kb on + strand, within Psyr_0113at 124.542 kb on + strand, within Psyr_0113at 124.543 kb on - strand, within Psyr_0113at 124.543 kb on - strand, within Psyr_0113at 124.557 kb on + strand, within Psyr_0113at 124.557 kb on + strand, within Psyr_0113at 124.557 kb on + strand, within Psyr_0113at 124.599 kb on - strandat 124.612 kb on + strandat 124.612 kb on + strandat 124.612 kb on + strandat 124.612 kb on + strandat 124.612 kb on + strandat 124.613 kb on - strandat 124.613 kb on - strandat 124.613 kb on - strandat 124.629 kb on + strandat 124.759 kb on - strandat 124.765 kb on - strandat 124.765 kb on - strandat 124.765 kb on - strandat 124.765 kb on - strandat 124.765 kb on - strandat 124.795 kb on - strandat 124.798 kb on + strandat 124.798 kb on + strandat 124.799 kb on - strandat 124.799 kb on - strandat 124.834 kb on + strandat 124.839 kb on + strandat 124.862 kb on - strandat 124.864 kb on + strandat 124.872 kb on + strandat 124.872 kb on + strandat 124.872 kb on + strandat 124.872 kb on + strandat 124.874 kb on + strandat 124.874 kb on + strandat 124.874 kb on + strandat 124.874 kb on + strandat 124.874 kb on + strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.875 kb on - strandat 124.897 kb on + strandat 124.898 kb on - strandat 124.917 kb on + strandat 124.917 kb on + strandat 124.917 kb on + strandat 124.918 kb on - strandat 124.918 kb on - strandat 124.918 kb on - strandat 124.918 kb on - strandat 124.969 kb on + strandat 124.970 kb on - strandat 124.970 kb on - strandat 125.044 kb on + strandat 125.068 kb on + strand, within Psyr_0114at 125.069 kb on - strand, within Psyr_0114at 125.131 kb on + strand, within Psyr_0114at 125.131 kb on + strand, within Psyr_0114at 125.132 kb on - strand, within Psyr_0114at 125.132 kb on - strand, within Psyr_0114at 125.154 kb on + strand, within Psyr_0114at 125.154 kb on + strand, within Psyr_0114at 125.154 kb on + strand, within Psyr_0114at 125.154 kb on + strand, within Psyr_0114at 125.154 kb on + strand, within Psyr_0114at 125.154 kb on + strand, within Psyr_0114at 125.154 kb on + strand, within Psyr_0114at 125.154 kb on + strand, within Psyr_0114at 125.154 kb on + strand, within Psyr_0114at 125.154 kb on + strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.155 kb on - strand, within Psyr_0114at 125.208 kb on - strand, within Psyr_0114at 125.223 kb on - strand, within Psyr_0114at 125.223 kb on - strand, within Psyr_0114at 125.262 kb on + strand, within Psyr_0114at 125.262 kb on + strand, within Psyr_0114at 125.263 kb on - strand, within Psyr_0114at 125.263 kb on - strand, within Psyr_0114at 125.453 kb on + strandat 125.453 kb on + strandat 125.453 kb on + strandat 125.453 kb on + strandat 125.453 kb on + strandat 125.454 kb on - strandat 125.454 kb on - strandat 125.522 kb on + strandat 125.523 kb on - strandat 125.561 kb on + strandat 125.561 kb on + strandat 125.561 kb on + strandat 125.610 kb on + strandat 125.610 kb on + strandat 125.610 kb on + strandat 125.610 kb on + strandat 125.610 kb on + strandat 125.610 kb on + strandat 125.610 kb on + strandat 125.611 kb on - strandat 125.611 kb on - strandat 125.611 kb on - strandat 125.611 kb on - strandat 125.611 kb on - strandat 125.611 kb on - strandat 125.620 kb on + strandat 125.621 kb on - strandat 125.649 kb on - strandat 125.649 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
122,954 + Psyr_0112 0.38 -2.2
122,954 + Psyr_0112 0.38 -0.1
122,998 - Psyr_0112 0.49 -2.3
122,998 - Psyr_0112 0.49 +0.2
123,045 - Psyr_0112 0.61 +2.7
123,045 - Psyr_0112 0.61 -0.4
123,045 - Psyr_0112 0.61 +3.1
123,045 - Psyr_0112 0.61 +2.7
123,054 - Psyr_0112 0.64 -1.3
123,068 + Psyr_0112 0.67 +2.7
123,068 + Psyr_0112 0.67 +2.2
123,068 + Psyr_0112 0.67 -3.9
123,068 + Psyr_0112 0.67 +0.9
123,069 - Psyr_0112 0.67 -1.0
123,149 - Psyr_0112 0.88 -1.0
123,149 - Psyr_0112 0.88 -0.5
123,193 + -0.6
123,193 + -2.6
123,193 + +0.9
123,193 + -4.1
123,193 + -3.7
123,193 + -4.7
123,193 + +1.5
123,193 + -2.8
123,194 - -3.1
123,194 - +1.2
123,194 - -0.8
123,201 + -1.6
123,201 + -1.4
123,201 + +0.9
123,202 - -2.1
123,202 - -0.7
123,202 - +2.7
123,220 + -1.6
123,220 + -2.0
123,220 + -0.1
123,220 + -2.8
123,221 - -1.0
123,221 - -0.9
123,221 - -4.5
123,221 - -0.7
123,233 + +3.4
123,233 + -1.1
123,234 - +0.9
123,234 - +2.7
123,234 - -0.1
123,234 - -0.7
123,254 + -0.1
123,254 + -3.0
123,255 - -1.8
123,255 - -0.9
123,255 - -0.1
123,255 - -1.1
123,255 - +0.9
123,283 - +0.1
123,283 - -1.5
123,343 + -0.1
123,343 + -3.6
123,343 + -0.1
123,344 - -3.2
123,344 - -1.3
123,344 - +1.9
123,344 - -0.2
123,375 + -3.8
123,396 - -0.1
123,415 - +0.4
123,415 - +0.9
123,513 + -0.1
123,536 - -2.0
123,617 - +1.9
123,650 + -0.1
123,650 + -2.3
123,650 + -1.3
123,650 + -0.8
123,651 - -0.4
123,651 - -1.4
123,730 + +0.7
123,731 - -0.5
123,898 + -2.3
123,899 - +0.9
123,899 - +3.6
123,932 - -0.7
123,956 + -0.1
123,956 + -3.7
123,957 - +1.9
123,957 - -0.1
123,957 - -0.5
123,957 - -1.4
123,957 - -1.8
123,972 + -2.7
123,972 + -0.1
123,973 - -0.7
123,998 - +0.8
124,047 - Psyr_0113 0.16 -1.5
124,242 + Psyr_0113 0.42 -2.0
124,243 - Psyr_0113 0.43 -0.5
124,265 - Psyr_0113 0.46 -3.2
124,424 + Psyr_0113 0.67 -4.5
124,425 - Psyr_0113 0.67 -0.1
124,425 - Psyr_0113 0.67 -4.7
124,425 - Psyr_0113 0.67 -1.8
124,425 - Psyr_0113 0.67 -2.3
124,425 - Psyr_0113 0.67 -1.9
124,425 - Psyr_0113 0.67 +2.2
124,459 + Psyr_0113 0.72 -2.9
124,519 + Psyr_0113 0.80 -6.4
124,520 - Psyr_0113 0.80 +1.5
124,542 + Psyr_0113 0.83 -0.1
124,542 + Psyr_0113 0.83 -4.8
124,543 - Psyr_0113 0.83 -1.7
124,543 - Psyr_0113 0.83 +1.9
124,557 + Psyr_0113 0.85 -2.8
124,557 + Psyr_0113 0.85 -3.9
124,557 + Psyr_0113 0.85 +2.7
124,599 - -1.3
124,612 + -3.1
124,612 + +2.9
124,612 + +0.4
124,612 + -3.4
124,612 + -2.3
124,613 - -2.2
124,613 - -0.1
124,613 - -2.0
124,629 + -0.1
124,759 - -0.4
124,765 - +0.1
124,765 - -0.1
124,765 - +2.5
124,765 - -0.5
124,765 - -4.4
124,795 - -1.2
124,798 + +1.9
124,798 + +2.9
124,799 - -2.4
124,799 - -0.7
124,834 + +4.0
124,839 + +4.4
124,862 - -4.7
124,864 + -2.7
124,872 + -1.5
124,872 + +4.2
124,872 + +1.2
124,872 + -1.7
124,874 + -0.0
124,874 + -1.7
124,874 + -0.2
124,874 + +1.5
124,874 + +1.5
124,875 - -1.1
124,875 - -0.4
124,875 - -3.2
124,875 - -1.1
124,875 - -3.5
124,875 - -1.6
124,875 - -3.1
124,875 - +4.2
124,875 - -1.7
124,875 - -2.5
124,875 - -3.9
124,875 - -1.5
124,875 - -1.8
124,875 - -2.6
124,897 + +4.6
124,898 - -2.2
124,917 + +0.5
124,917 + -1.1
124,917 + -2.3
124,918 - -2.0
124,918 - -1.4
124,918 - -2.0
124,918 - -1.1
124,969 + +3.6
124,970 - -0.1
124,970 - -0.2
125,044 + +0.0
125,068 + Psyr_0114 0.14 -0.8
125,069 - Psyr_0114 0.15 -0.9
125,131 + Psyr_0114 0.28 +0.1
125,131 + Psyr_0114 0.28 +3.8
125,132 - Psyr_0114 0.28 -1.7
125,132 - Psyr_0114 0.28 -0.5
125,154 + Psyr_0114 0.33 -0.1
125,154 + Psyr_0114 0.33 -3.1
125,154 + Psyr_0114 0.33 -0.5
125,154 + Psyr_0114 0.33 +0.0
125,154 + Psyr_0114 0.33 +0.6
125,154 + Psyr_0114 0.33 +2.7
125,154 + Psyr_0114 0.33 +4.2
125,154 + Psyr_0114 0.33 -4.0
125,154 + Psyr_0114 0.33 +3.4
125,154 + Psyr_0114 0.33 -0.2
125,155 - Psyr_0114 0.34 -0.1
125,155 - Psyr_0114 0.34 -0.1
125,155 - Psyr_0114 0.34 -0.9
125,155 - Psyr_0114 0.34 -1.2
125,155 - Psyr_0114 0.34 +4.2
125,155 - Psyr_0114 0.34 -3.4
125,155 - Psyr_0114 0.34 +2.5
125,155 - Psyr_0114 0.34 -2.6
125,155 - Psyr_0114 0.34 -2.9
125,155 - Psyr_0114 0.34 -1.6
125,155 - Psyr_0114 0.34 -3.8
125,155 - Psyr_0114 0.34 -2.5
125,208 - Psyr_0114 0.45 -4.2
125,223 - Psyr_0114 0.49 -2.9
125,223 - Psyr_0114 0.49 +1.9
125,262 + Psyr_0114 0.57 -2.4
125,262 + Psyr_0114 0.57 +0.7
125,263 - Psyr_0114 0.57 -0.3
125,263 - Psyr_0114 0.57 +0.0
125,453 + +2.2
125,453 + -3.1
125,453 + +4.8
125,453 + +4.4
125,453 + +1.9
125,454 - -0.8
125,454 - -2.1
125,522 + +2.7
125,523 - +0.9
125,561 + -4.2
125,561 + +3.4
125,561 + -2.0
125,610 + -0.7
125,610 + +2.2
125,610 + -0.5
125,610 + -0.1
125,610 + -2.1
125,610 + +3.2
125,610 + -1.7
125,611 - -1.0
125,611 - +4.2
125,611 - +0.4
125,611 - +3.8
125,611 - -0.8
125,611 - +0.4
125,620 + +3.5
125,621 - +2.5
125,649 - -0.3
125,649 - -0.2

Or see this region's nucleotide sequence