Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0104

Experiment: KB with Mitomycin C 0.625 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Mitomycin C 0.625 ug/ml
114,717	+		Psyr_0103	0.54	+2.5
114,717	+		Psyr_0103	0.54	-3.1
114,717	+		Psyr_0103	0.54	+0.3
114,718	-		Psyr_0103	0.54	-4.5
114,718	-		Psyr_0103	0.54	-3.2
114,718	-		Psyr_0103	0.54	+2.5
114,718	-		Psyr_0103	0.54	-4.9
114,718	-		Psyr_0103	0.54	-1.7
114,757	+		Psyr_0103	0.64	-0.7
114,774	-		Psyr_0103	0.69	-5.1
114,808	+		Psyr_0103	0.78	-2.8
114,808	+		Psyr_0103	0.78	-3.7
114,809	-		Psyr_0103	0.78	-0.1
114,909	-				-1.1
114,935	+				-3.7
114,992	+				-2.6
114,993	-				-1.1
114,996	-				-3.2
115,014	+				-1.8
115,015	-				-2.1
115,015	-				-1.9
115,015	-				-0.1
115,015	-				+0.9
115,015	-				+2.5
115,065	+				-2.7
115,066	-				-1.1
115,071	+				+2.5
115,071	+				-3.2
115,071	+				+0.9
115,072	-				+2.9
115,072	-				-0.6
115,072	-				-4.1
115,072	-				-2.7
115,072	-				-3.3
115,072	-				-0.4
115,072	-				-3.1
115,072	-				-2.4
115,072	-				-2.7
115,080	+				-0.8
115,081	-				-3.8
115,150	+				-4.8
115,168	+				-0.5
115,168	+				-2.9
115,169	-				-1.8
115,169	-				-4.9
115,204	+				+0.2
115,204	+				-0.3
115,240	+				-1.7
115,241	-				-0.4
115,241	-				-1.1
115,273	-				-1.5
115,321	+				-2.4
115,322	-				+0.9
115,322	-				-0.1
115,353	+				-0.1
115,353	+				-2.0
115,354	-				+2.2
115,354	-				-2.2
115,371	-				+2.2
115,382	+				-0.4
115,382	+				-2.2
115,383	-				+3.1
115,383	-				-0.9
115,383	-				-1.6
115,418	-				+2.1
115,418	-				+0.4
115,570	+				-2.5
115,570	+				-1.2
115,571	-				-3.2
115,585	+				-1.5
115,586	-				-2.1
115,622	+				+0.9
115,622	+				+4.8
115,622	+				+2.7
115,622	+				+3.5
115,622	+				+1.4
115,622	+				+1.9
115,622	+				+1.0
115,622	+				+4.2
115,623	-				+2.5
115,623	-				+1.9
115,623	-				-0.1
115,623	-				-1.6
115,623	-				-2.1
115,623	-				+2.5
115,623	-				-0.1
115,623	-				-2.5
115,654	-				-2.0
115,727	-				-2.3
115,737	+				-0.7
115,737	+				-0.1
115,770	+				-2.0
115,770	+				-3.0
115,771	-				+2.5
115,771	-				-0.7
115,771	-				-0.1
115,786	+				-0.3
115,786	+				-1.2
115,787	-				-2.8
115,787	-				+0.9
115,787	-				+0.1
115,787	-				-2.0
115,787	-				-1.4
115,787	-				-3.5
115,885	+		Psyr_0104	0.15	-1.2
115,886	-		Psyr_0104	0.15	+0.7
115,898	+		Psyr_0104	0.16	-0.1
115,904	+		Psyr_0104	0.16	-2.1
115,905	-		Psyr_0104	0.17	-2.2
115,954	+		Psyr_0104	0.21	-2.7
115,989	+		Psyr_0104	0.24	-1.6
115,989	+		Psyr_0104	0.24	-2.4
115,989	+		Psyr_0104	0.24	+1.9
115,989	+		Psyr_0104	0.24	-1.2
115,990	-		Psyr_0104	0.24	+3.5
115,990	-		Psyr_0104	0.24	+4.4
115,990	-		Psyr_0104	0.24	-1.2
116,003	-		Psyr_0104	0.25	-3.0
116,005	+		Psyr_0104	0.25	-1.5
116,027	+		Psyr_0104	0.27	-0.1
116,028	-		Psyr_0104	0.27	-2.0
116,033	+		Psyr_0104	0.28	-0.3
116,033	+		Psyr_0104	0.28	-2.2
116,036	-		Psyr_0104	0.28	-1.2
116,036	-		Psyr_0104	0.28	-2.8
116,053	-		Psyr_0104	0.29	+1.5
116,108	-		Psyr_0104	0.34	-0.1
116,108	-		Psyr_0104	0.34	-1.9
116,216	+		Psyr_0104	0.43	-2.3
116,219	+		Psyr_0104	0.44	-1.2
116,305	+		Psyr_0104	0.51	+0.9
116,306	-		Psyr_0104	0.51	+1.5
116,322	-		Psyr_0104	0.52	-2.2
116,354	-		Psyr_0104	0.55	-5.1
116,373	+		Psyr_0104	0.57	+0.4
116,373	+		Psyr_0104	0.57	+2.9
116,374	-		Psyr_0104	0.57	-1.8
116,377	+		Psyr_0104	0.57	-0.7
116,377	+		Psyr_0104	0.57	-1.0
116,377	+		Psyr_0104	0.57	-0.4
116,377	+		Psyr_0104	0.57	-0.1
116,377	+		Psyr_0104	0.57	+2.5
116,377	+		Psyr_0104	0.57	-4.9
116,377	+		Psyr_0104	0.57	+2.2
116,377	+		Psyr_0104	0.57	-5.0
116,377	+		Psyr_0104	0.57	-1.7
116,377	+		Psyr_0104	0.57	-1.8
116,377	+		Psyr_0104	0.57	-2.2
116,377	+		Psyr_0104	0.57	-0.7
116,378	-		Psyr_0104	0.57	-1.4
116,378	-		Psyr_0104	0.57	+1.5
116,378	-		Psyr_0104	0.57	-2.9
116,378	-		Psyr_0104	0.57	-2.9
116,378	-		Psyr_0104	0.57	-0.9
116,378	-		Psyr_0104	0.57	-0.1
116,384	-		Psyr_0104	0.58	-3.5
116,384	-		Psyr_0104	0.58	-1.5
116,413	+		Psyr_0104	0.60	-5.9
116,413	+		Psyr_0104	0.60	+0.8
116,414	-		Psyr_0104	0.60	-1.5
116,453	+		Psyr_0104	0.64	-2.1
116,453	+		Psyr_0104	0.64	+1.9
116,530	+		Psyr_0104	0.70	-1.7
116,575	+		Psyr_0104	0.74	-0.1
116,619	+		Psyr_0104	0.78	-1.7
116,620	-		Psyr_0104	0.78	-5.7
116,620	-		Psyr_0104	0.78	-1.8
116,620	-		Psyr_0104	0.78	+2.2
116,741	-		Psyr_0104	0.89	-2.9
116,752	-		Psyr_0104	0.89	-4.1
116,766	+				-2.0
116,767	-				-1.5
116,803	-				-5.5
116,803	-				+2.7
116,821	+				+1.9
116,844	+				-0.2
116,844	+				-0.7
116,844	+				+1.9
116,844	+				-1.8
116,845	-				+3.6
116,861	-				-0.1
116,871	+				-2.4
116,896	+				-2.9
116,896	+				-0.5
116,896	+				-1.3
116,896	+				-2.1
116,896	+				-1.4
116,897	-				-5.1
116,897	-				-2.5
116,897	-				-0.1
116,897	-				-2.6
116,897	-				-1.7
116,908	+				-1.4
116,908	+				+2.2
116,908	+				-1.0
116,908	+				-1.2
116,908	+				-0.1
116,908	+				+1.5
116,908	+				-2.7
116,908	+				-3.7
116,908	+				+0.2
116,908	+				-1.9
116,908	+				-2.5
116,908	+				-2.0
116,909	-				-4.2
116,909	-				-0.4
116,909	-				-0.1
116,909	-				-0.1
116,909	-				+2.2
116,909	-				-2.1
116,909	-				-0.8
116,909	-				-2.3
116,909	-				-4.0
116,909	-				+1.5
116,909	-				-2.8
116,909	-				-0.8
116,909	-				+1.5
116,909	-				-2.7
116,909	-				-0.6
116,909	-				-1.2
116,909	-				+1.3
116,909	-				+1.5
116,909	-				-3.5
116,909	-				-1.1
116,909	-				-0.9
116,909	-				+1.9
116,909	-				+1.5
116,909	-				-3.1
116,930	+				+2.7
116,930	+				-2.1
116,931	-				-4.5
116,931	-				-3.0
116,931	-				-2.1
116,932	+				-3.5
116,933	-				-4.8
116,933	-				-1.9
116,933	-				-1.8
116,933	-				+2.9
116,933	-				-4.7