Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0102 and Psyr_0103 are separated by 11 nucleotides Psyr_0103 and Psyr_0104 are separated by 821 nucleotides
Psyr_0102: Psyr_0102 - hypothetical protein, at 113,906 to 114,502
_0102
Psyr_0103: Psyr_0103 - conserved hypothetical protein, at 114,514 to 114,891
_0103
Psyr_0104: Psyr_0104 - hypothetical protein, at 115,713 to 116,873
_0104
Position (kb)
114
115 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 113.516 kb on - strand at 113.523 kb on - strand at 113.534 kb on + strand at 113.534 kb on + strand at 113.535 kb on - strand at 113.535 kb on - strand at 113.535 kb on - strand at 113.654 kb on - strand at 113.735 kb on + strand at 113.736 kb on - strand at 113.737 kb on + strand at 113.737 kb on + strand at 113.737 kb on + strand at 113.737 kb on + strand at 113.737 kb on + strand at 113.737 kb on + strand at 113.737 kb on + strand at 113.737 kb on + strand at 113.738 kb on - strand at 113.738 kb on - strand at 113.738 kb on - strand at 113.751 kb on + strand at 113.751 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.755 kb on + strand at 113.756 kb on - strand at 113.756 kb on - strand at 113.756 kb on - strand at 113.756 kb on - strand at 113.756 kb on - strand at 113.756 kb on - strand at 113.756 kb on - strand at 113.756 kb on - strand at 113.756 kb on - strand at 113.756 kb on - strand at 113.756 kb on - strand at 113.793 kb on + strand at 113.793 kb on + strand at 113.793 kb on + strand at 113.794 kb on - strand at 113.804 kb on - strand at 113.875 kb on + strand at 113.875 kb on + strand at 113.876 kb on - strand at 113.876 kb on - strand at 113.876 kb on - strand at 113.876 kb on - strand at 113.876 kb on - strand at 113.876 kb on - strand at 113.963 kb on + strand at 113.964 kb on - strand at 114.021 kb on + strand, within Psyr_0102 at 114.021 kb on + strand, within Psyr_0102 at 114.021 kb on + strand, within Psyr_0102 at 114.021 kb on + strand, within Psyr_0102 at 114.021 kb on + strand, within Psyr_0102 at 114.021 kb on + strand, within Psyr_0102 at 114.021 kb on + strand, within Psyr_0102 at 114.022 kb on - strand, within Psyr_0102 at 114.022 kb on - strand, within Psyr_0102 at 114.022 kb on - strand, within Psyr_0102 at 114.022 kb on - strand, within Psyr_0102 at 114.022 kb on - strand, within Psyr_0102 at 114.022 kb on - strand, within Psyr_0102 at 114.024 kb on + strand, within Psyr_0102 at 114.025 kb on - strand, within Psyr_0102 at 114.025 kb on - strand, within Psyr_0102 at 114.028 kb on + strand, within Psyr_0102 at 114.028 kb on + strand, within Psyr_0102 at 114.029 kb on - strand, within Psyr_0102 at 114.029 kb on - strand, within Psyr_0102 at 114.029 kb on - strand, within Psyr_0102 at 114.086 kb on + strand, within Psyr_0102 at 114.086 kb on + strand, within Psyr_0102 at 114.087 kb on - strand, within Psyr_0102 at 114.119 kb on - strand, within Psyr_0102 at 114.144 kb on + strand, within Psyr_0102 at 114.165 kb on - strand, within Psyr_0102 at 114.224 kb on + strand, within Psyr_0102 at 114.224 kb on + strand, within Psyr_0102 at 114.224 kb on + strand, within Psyr_0102 at 114.225 kb on - strand, within Psyr_0102 at 114.225 kb on - strand, within Psyr_0102 at 114.227 kb on + strand, within Psyr_0102 at 114.228 kb on - strand, within Psyr_0102 at 114.228 kb on - strand, within Psyr_0102 at 114.246 kb on - strand, within Psyr_0102 at 114.269 kb on + strand, within Psyr_0102 at 114.269 kb on + strand, within Psyr_0102 at 114.270 kb on - strand, within Psyr_0102 at 114.311 kb on + strand, within Psyr_0102 at 114.311 kb on + strand, within Psyr_0102 at 114.311 kb on + strand, within Psyr_0102 at 114.360 kb on + strand, within Psyr_0102 at 114.360 kb on + strand, within Psyr_0102 at 114.360 kb on + strand, within Psyr_0102 at 114.360 kb on + strand, within Psyr_0102 at 114.360 kb on + strand, within Psyr_0102 at 114.360 kb on + strand, within Psyr_0102 at 114.360 kb on + strand, within Psyr_0102 at 114.360 kb on + strand, within Psyr_0102 at 114.361 kb on - strand, within Psyr_0102 at 114.361 kb on - strand, within Psyr_0102 at 114.361 kb on - strand, within Psyr_0102 at 114.361 kb on - strand, within Psyr_0102 at 114.390 kb on - strand, within Psyr_0102 at 114.396 kb on - strand, within Psyr_0102 at 114.409 kb on + strand, within Psyr_0102 at 114.410 kb on - strand, within Psyr_0102 at 114.413 kb on + strand, within Psyr_0102 at 114.413 kb on + strand, within Psyr_0102 at 114.414 kb on - strand, within Psyr_0102 at 114.414 kb on - strand, within Psyr_0102 at 114.561 kb on - strand, within Psyr_0103 at 114.625 kb on - strand, within Psyr_0103 at 114.658 kb on - strand, within Psyr_0103 at 114.717 kb on + strand, within Psyr_0103 at 114.717 kb on + strand, within Psyr_0103 at 114.717 kb on + strand, within Psyr_0103 at 114.718 kb on - strand, within Psyr_0103 at 114.718 kb on - strand, within Psyr_0103 at 114.718 kb on - strand, within Psyr_0103 at 114.718 kb on - strand, within Psyr_0103 at 114.718 kb on - strand, within Psyr_0103 at 114.757 kb on + strand, within Psyr_0103 at 114.774 kb on - strand, within Psyr_0103 at 114.808 kb on + strand, within Psyr_0103 at 114.808 kb on + strand, within Psyr_0103 at 114.809 kb on - strand, within Psyr_0103 at 114.909 kb on - strand at 114.935 kb on + strand at 114.992 kb on + strand at 114.993 kb on - strand at 114.996 kb on - strand at 115.014 kb on + strand at 115.015 kb on - strand at 115.015 kb on - strand at 115.015 kb on - strand at 115.015 kb on - strand at 115.015 kb on - strand at 115.065 kb on + strand at 115.066 kb on - strand at 115.071 kb on + strand at 115.071 kb on + strand at 115.071 kb on + strand at 115.072 kb on - strand at 115.072 kb on - strand at 115.072 kb on - strand at 115.072 kb on - strand at 115.072 kb on - strand at 115.072 kb on - strand at 115.072 kb on - strand at 115.072 kb on - strand at 115.072 kb on - strand at 115.080 kb on + strand at 115.081 kb on - strand at 115.150 kb on + strand at 115.168 kb on + strand at 115.168 kb on + strand at 115.169 kb on - strand at 115.169 kb on - strand at 115.204 kb on + strand at 115.204 kb on + strand at 115.240 kb on + strand at 115.241 kb on - strand at 115.241 kb on - strand at 115.273 kb on - strand at 115.321 kb on + strand at 115.322 kb on - strand at 115.322 kb on - strand at 115.353 kb on + strand at 115.353 kb on + strand at 115.354 kb on - strand at 115.354 kb on - strand at 115.371 kb on - strand at 115.382 kb on + strand at 115.382 kb on + strand at 115.383 kb on - strand at 115.383 kb on - strand at 115.383 kb on - strand at 115.418 kb on - strand at 115.418 kb on - strand at 115.570 kb on + strand at 115.570 kb on + strand at 115.571 kb on - strand at 115.585 kb on + strand at 115.586 kb on - strand at 115.622 kb on + strand at 115.622 kb on + strand at 115.622 kb on + strand at 115.622 kb on + strand at 115.622 kb on + strand at 115.622 kb on + strand at 115.622 kb on + strand at 115.622 kb on + strand at 115.623 kb on - strand at 115.623 kb on - strand at 115.623 kb on - strand at 115.623 kb on - strand at 115.623 kb on - strand at 115.623 kb on - strand at 115.623 kb on - strand at 115.623 kb on - strand at 115.654 kb on - strand at 115.727 kb on - strand at 115.737 kb on + strand at 115.737 kb on + strand at 115.770 kb on + strand at 115.770 kb on + strand at 115.771 kb on - strand at 115.771 kb on - strand at 115.771 kb on - strand at 115.786 kb on + strand at 115.786 kb on + strand at 115.787 kb on - strand at 115.787 kb on - strand at 115.787 kb on - strand at 115.787 kb on - strand at 115.787 kb on - strand at 115.787 kb on - strand at 115.885 kb on + strand, within Psyr_0104 at 115.886 kb on - strand, within Psyr_0104
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 113,516 - -4.6 113,523 - -0.8 113,534 + -0.1 113,534 + +3.4 113,535 - -3.4 113,535 - -1.2 113,535 - -0.1 113,654 - +1.6 113,735 + +1.5 113,736 - -3.6 113,737 + -5.9 113,737 + -3.2 113,737 + -4.2 113,737 + -0.1 113,737 + -3.9 113,737 + -0.9 113,737 + +0.2 113,737 + -3.5 113,738 - +0.2 113,738 - -0.1 113,738 - -1.9 113,751 + -2.5 113,751 + +1.5 113,755 + +2.7 113,755 + -1.1 113,755 + -0.1 113,755 + +1.5 113,755 + +3.2 113,755 + +0.9 113,755 + -1.1 113,755 + -2.5 113,755 + +0.9 113,755 + -0.4 113,755 + -0.1 113,755 + -1.0 113,755 + -2.8 113,755 + -0.1 113,755 + -0.1 113,756 - -3.1 113,756 - -2.4 113,756 - -1.8 113,756 - +0.8 113,756 - -1.0 113,756 - +3.5 113,756 - -0.9 113,756 - +2.9 113,756 - +1.9 113,756 - +0.0 113,756 - -2.4 113,793 + -2.7 113,793 + +3.1 113,793 + +3.6 113,794 - -3.0 113,804 - -0.1 113,875 + +0.9 113,875 + -2.0 113,876 - -3.5 113,876 - -1.7 113,876 - -1.1 113,876 - -0.1 113,876 - +0.3 113,876 - -2.0 113,963 + -0.1 113,964 - +4.2 114,021 + Psyr_0102 0.19 -4.2 114,021 + Psyr_0102 0.19 -5.2 114,021 + Psyr_0102 0.19 -0.1 114,021 + Psyr_0102 0.19 -0.1 114,021 + Psyr_0102 0.19 -1.1 114,021 + Psyr_0102 0.19 +1.5 114,021 + Psyr_0102 0.19 -0.1 114,022 - Psyr_0102 0.19 +2.9 114,022 - Psyr_0102 0.19 -1.4 114,022 - Psyr_0102 0.19 -1.4 114,022 - Psyr_0102 0.19 +1.5 114,022 - Psyr_0102 0.19 -1.5 114,022 - Psyr_0102 0.19 -1.6 114,024 + Psyr_0102 0.20 -2.2 114,025 - Psyr_0102 0.20 -0.3 114,025 - Psyr_0102 0.20 -2.0 114,028 + Psyr_0102 0.20 -0.1 114,028 + Psyr_0102 0.20 -0.4 114,029 - Psyr_0102 0.21 +0.2 114,029 - Psyr_0102 0.21 +4.4 114,029 - Psyr_0102 0.21 +1.2 114,086 + Psyr_0102 0.30 -2.2 114,086 + Psyr_0102 0.30 -0.1 114,087 - Psyr_0102 0.30 -1.5 114,119 - Psyr_0102 0.36 -1.7 114,144 + Psyr_0102 0.40 -4.5 114,165 - Psyr_0102 0.43 -3.4 114,224 + Psyr_0102 0.53 -0.1 114,224 + Psyr_0102 0.53 +0.3 114,224 + Psyr_0102 0.53 +1.9 114,225 - Psyr_0102 0.53 -0.1 114,225 - Psyr_0102 0.53 -1.5 114,227 + Psyr_0102 0.54 -0.1 114,228 - Psyr_0102 0.54 +2.2 114,228 - Psyr_0102 0.54 +1.9 114,246 - Psyr_0102 0.57 -3.7 114,269 + Psyr_0102 0.61 -0.1 114,269 + Psyr_0102 0.61 +0.1 114,270 - Psyr_0102 0.61 +0.9 114,311 + Psyr_0102 0.68 -2.3 114,311 + Psyr_0102 0.68 -1.6 114,311 + Psyr_0102 0.68 +1.5 114,360 + Psyr_0102 0.76 +1.9 114,360 + Psyr_0102 0.76 -4.6 114,360 + Psyr_0102 0.76 -3.0 114,360 + Psyr_0102 0.76 +2.7 114,360 + Psyr_0102 0.76 -0.2 114,360 + Psyr_0102 0.76 +3.7 114,360 + Psyr_0102 0.76 -2.2 114,360 + Psyr_0102 0.76 -0.5 114,361 - Psyr_0102 0.76 -4.2 114,361 - Psyr_0102 0.76 +2.9 114,361 - Psyr_0102 0.76 -3.7 114,361 - Psyr_0102 0.76 -0.1 114,390 - Psyr_0102 0.81 -1.9 114,396 - Psyr_0102 0.82 -1.6 114,409 + Psyr_0102 0.84 -1.3 114,410 - Psyr_0102 0.84 -3.7 114,413 + Psyr_0102 0.85 -0.1 114,413 + Psyr_0102 0.85 -2.8 114,414 - Psyr_0102 0.85 -1.8 114,414 - Psyr_0102 0.85 -0.1 114,561 - Psyr_0103 0.12 -3.7 114,625 - Psyr_0103 0.29 -2.8 114,658 - Psyr_0103 0.38 -4.1 114,717 + Psyr_0103 0.54 +2.5 114,717 + Psyr_0103 0.54 -3.1 114,717 + Psyr_0103 0.54 +0.3 114,718 - Psyr_0103 0.54 -4.5 114,718 - Psyr_0103 0.54 -3.2 114,718 - Psyr_0103 0.54 +2.5 114,718 - Psyr_0103 0.54 -4.9 114,718 - Psyr_0103 0.54 -1.7 114,757 + Psyr_0103 0.64 -0.7 114,774 - Psyr_0103 0.69 -5.1 114,808 + Psyr_0103 0.78 -2.8 114,808 + Psyr_0103 0.78 -3.7 114,809 - Psyr_0103 0.78 -0.1 114,909 - -1.1 114,935 + -3.7 114,992 + -2.6 114,993 - -1.1 114,996 - -3.2 115,014 + -1.8 115,015 - -2.1 115,015 - -1.9 115,015 - -0.1 115,015 - +0.9 115,015 - +2.5 115,065 + -2.7 115,066 - -1.1 115,071 + +2.5 115,071 + -3.2 115,071 + +0.9 115,072 - +2.9 115,072 - -0.6 115,072 - -4.1 115,072 - -2.7 115,072 - -3.3 115,072 - -0.4 115,072 - -3.1 115,072 - -2.4 115,072 - -2.7 115,080 + -0.8 115,081 - -3.8 115,150 + -4.8 115,168 + -0.5 115,168 + -2.9 115,169 - -1.8 115,169 - -4.9 115,204 + +0.2 115,204 + -0.3 115,240 + -1.7 115,241 - -0.4 115,241 - -1.1 115,273 - -1.5 115,321 + -2.4 115,322 - +0.9 115,322 - -0.1 115,353 + -0.1 115,353 + -2.0 115,354 - +2.2 115,354 - -2.2 115,371 - +2.2 115,382 + -0.4 115,382 + -2.2 115,383 - +3.1 115,383 - -0.9 115,383 - -1.6 115,418 - +2.1 115,418 - +0.4 115,570 + -2.5 115,570 + -1.2 115,571 - -3.2 115,585 + -1.5 115,586 - -2.1 115,622 + +0.9 115,622 + +4.8 115,622 + +2.7 115,622 + +3.5 115,622 + +1.4 115,622 + +1.9 115,622 + +1.0 115,622 + +4.2 115,623 - +2.5 115,623 - +1.9 115,623 - -0.1 115,623 - -1.6 115,623 - -2.1 115,623 - +2.5 115,623 - -0.1 115,623 - -2.5 115,654 - -2.0 115,727 - -2.3 115,737 + -0.7 115,737 + -0.1 115,770 + -2.0 115,770 + -3.0 115,771 - +2.5 115,771 - -0.7 115,771 - -0.1 115,786 + -0.3 115,786 + -1.2 115,787 - -2.8 115,787 - +0.9 115,787 - +0.1 115,787 - -2.0 115,787 - -1.4 115,787 - -3.5 115,885 + Psyr_0104 0.15 -1.2 115,886 - Psyr_0104 0.15 +0.7
Or see this region's nucleotide sequence