Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0098

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0097 and Psyr_0098 overlap by 1 nucleotidesPsyr_0098 and Psyr_0099 are separated by 8 nucleotides Psyr_0097: Psyr_0097 - hypothetical protein, at 108,211 to 109,452 _0097 Psyr_0098: Psyr_0098 - Protein of unknown function DUF87, at 109,452 to 111,323 _0098 Psyr_0099: Psyr_0099 - Conserved hypothetical protein, at 111,332 to 111,541 _0099 Position (kb) 109 110 111 112Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 108.483 kb on - strand, within Psyr_0097at 108.504 kb on - strand, within Psyr_0097at 108.515 kb on + strand, within Psyr_0097at 108.516 kb on - strand, within Psyr_0097at 108.548 kb on + strand, within Psyr_0097at 108.549 kb on - strand, within Psyr_0097at 108.614 kb on + strand, within Psyr_0097at 108.813 kb on + strand, within Psyr_0097at 108.814 kb on - strand, within Psyr_0097at 108.818 kb on + strand, within Psyr_0097at 108.885 kb on - strand, within Psyr_0097at 108.964 kb on + strand, within Psyr_0097at 108.964 kb on + strand, within Psyr_0097at 109.014 kb on + strand, within Psyr_0097at 109.090 kb on - strand, within Psyr_0097at 109.141 kb on + strand, within Psyr_0097at 109.404 kb on + strandat 109.493 kb on - strandat 109.568 kb on + strandat 109.568 kb on + strandat 109.568 kb on + strandat 109.569 kb on - strandat 109.607 kb on - strandat 109.642 kb on + strand, within Psyr_0098at 109.756 kb on + strand, within Psyr_0098at 109.757 kb on - strand, within Psyr_0098at 109.793 kb on - strand, within Psyr_0098at 109.821 kb on + strand, within Psyr_0098at 109.904 kb on + strand, within Psyr_0098at 109.952 kb on + strand, within Psyr_0098at 110.005 kb on - strand, within Psyr_0098at 110.021 kb on + strand, within Psyr_0098at 110.035 kb on + strand, within Psyr_0098at 110.036 kb on - strand, within Psyr_0098at 110.036 kb on - strand, within Psyr_0098at 110.036 kb on - strand, within Psyr_0098at 110.161 kb on + strand, within Psyr_0098at 110.213 kb on + strand, within Psyr_0098at 110.316 kb on - strand, within Psyr_0098at 110.474 kb on + strand, within Psyr_0098at 110.475 kb on - strand, within Psyr_0098at 110.508 kb on + strand, within Psyr_0098at 110.573 kb on + strand, within Psyr_0098at 110.573 kb on + strand, within Psyr_0098at 110.574 kb on - strand, within Psyr_0098at 110.574 kb on - strand, within Psyr_0098at 110.574 kb on - strand, within Psyr_0098at 110.585 kb on + strand, within Psyr_0098at 110.587 kb on + strand, within Psyr_0098at 110.715 kb on - strand, within Psyr_0098at 110.715 kb on - strand, within Psyr_0098at 110.752 kb on + strand, within Psyr_0098at 110.752 kb on + strand, within Psyr_0098at 110.752 kb on + strand, within Psyr_0098at 110.752 kb on + strand, within Psyr_0098at 110.752 kb on - strand, within Psyr_0098at 110.754 kb on + strand, within Psyr_0098at 110.834 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.836 kb on + strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.837 kb on - strand, within Psyr_0098at 110.838 kb on + strand, within Psyr_0098at 110.839 kb on - strand, within Psyr_0098at 110.890 kb on + strand, within Psyr_0098at 110.914 kb on + strand, within Psyr_0098at 110.914 kb on + strand, within Psyr_0098at 110.914 kb on + strand, within Psyr_0098at 110.915 kb on - strand, within Psyr_0098at 110.957 kb on + strand, within Psyr_0098at 110.958 kb on - strand, within Psyr_0098at 110.993 kb on + strand, within Psyr_0098at 110.993 kb on + strand, within Psyr_0098at 110.993 kb on + strand, within Psyr_0098at 111.015 kb on - strand, within Psyr_0098at 111.027 kb on - strand, within Psyr_0098at 111.065 kb on + strand, within Psyr_0098at 111.065 kb on + strand, within Psyr_0098at 111.065 kb on + strand, within Psyr_0098at 111.065 kb on + strand, within Psyr_0098at 111.066 kb on - strand, within Psyr_0098at 111.066 kb on - strand, within Psyr_0098at 111.066 kb on - strand, within Psyr_0098at 111.066 kb on - strand, within Psyr_0098at 111.066 kb on - strand, within Psyr_0098at 111.099 kb on - strand, within Psyr_0098at 111.099 kb on - strand, within Psyr_0098at 111.115 kb on + strand, within Psyr_0098at 111.126 kb on - strand, within Psyr_0098at 111.126 kb on - strand, within Psyr_0098at 111.137 kb on + strandat 111.137 kb on + strandat 111.137 kb on + strandat 111.138 kb on - strandat 111.142 kb on + strandat 111.182 kb on + strandat 111.258 kb on - strandat 111.262 kb on - strandat 111.444 kb on + strand, within Psyr_0099at 111.512 kb on - strand, within Psyr_0099at 111.523 kb on + strandat 111.527 kb on + strandat 111.543 kb on + strandat 111.581 kb on + strandat 111.582 kb on - strandat 111.590 kb on - strandat 111.624 kb on - strandat 111.712 kb on - strandat 111.716 kb on + strandat 111.716 kb on + strandat 111.717 kb on - strandat 111.717 kb on - strandat 111.717 kb on - strandat 111.717 kb on - strandat 111.756 kb on - strandat 111.801 kb on + strandat 111.801 kb on + strandat 111.801 kb on + strandat 111.801 kb on + strandat 111.801 kb on + strandat 111.802 kb on - strandat 111.802 kb on - strandat 111.802 kb on - strandat 111.802 kb on - strandat 111.905 kb on - strandat 111.906 kb on + strandat 111.906 kb on + strandat 111.906 kb on + strandat 111.906 kb on + strandat 111.906 kb on + strandat 111.907 kb on - strandat 111.907 kb on - strandat 111.908 kb on + strandat 111.908 kb on + strandat 111.909 kb on - strandat 111.910 kb on + strandat 111.910 kb on + strandat 111.910 kb on + strandat 111.910 kb on + strandat 111.911 kb on - strandat 111.911 kb on - strandat 111.911 kb on - strandat 111.911 kb on - strandat 111.914 kb on + strandat 111.914 kb on + strandat 111.915 kb on - strandat 111.915 kb on - strandat 111.915 kb on - strandat 111.916 kb on + strandat 111.916 kb on + strandat 111.917 kb on - strandat 111.917 kb on - strandat 111.917 kb on - strandat 111.917 kb on - strandat 111.960 kb on - strandat 111.973 kb on + strandat 111.973 kb on + strandat 111.974 kb on - strandat 111.997 kb on - strandat 111.997 kb on - strandat 112.021 kb on - strandat 112.115 kb on + strandat 112.147 kb on - strandat 112.173 kb on + strandat 112.173 kb on + strandat 112.173 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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108,483 - Psyr_0097 0.22 -1.0
108,504 - Psyr_0097 0.24 -0.9
108,515 + Psyr_0097 0.24 -1.7
108,516 - Psyr_0097 0.25 -1.5
108,548 + Psyr_0097 0.27 -2.5
108,549 - Psyr_0097 0.27 +3.5
108,614 + Psyr_0097 0.32 -3.0
108,813 + Psyr_0097 0.48 -3.8
108,814 - Psyr_0097 0.49 -1.2
108,818 + Psyr_0097 0.49 -3.1
108,885 - Psyr_0097 0.54 -2.8
108,964 + Psyr_0097 0.61 -0.1
108,964 + Psyr_0097 0.61 -4.0
109,014 + Psyr_0097 0.65 +0.2
109,090 - Psyr_0097 0.71 -2.9
109,141 + Psyr_0097 0.75 +1.5
109,404 + -4.1
109,493 - -4.4
109,568 + +2.5
109,568 + -4.3
109,568 + -2.2
109,569 - +0.3
109,607 - +2.2
109,642 + Psyr_0098 0.10 -2.0
109,756 + Psyr_0098 0.16 -1.9
109,757 - Psyr_0098 0.16 -3.4
109,793 - Psyr_0098 0.18 -2.8
109,821 + Psyr_0098 0.20 -0.1
109,904 + Psyr_0098 0.24 +0.9
109,952 + Psyr_0098 0.27 -1.4
110,005 - Psyr_0098 0.30 -3.3
110,021 + Psyr_0098 0.30 +1.5
110,035 + Psyr_0098 0.31 -0.8
110,036 - Psyr_0098 0.31 -0.1
110,036 - Psyr_0098 0.31 +1.9
110,036 - Psyr_0098 0.31 -3.2
110,161 + Psyr_0098 0.38 -0.1
110,213 + Psyr_0098 0.41 -5.2
110,316 - Psyr_0098 0.46 -4.5
110,474 + Psyr_0098 0.55 +2.2
110,475 - Psyr_0098 0.55 -2.9
110,508 + Psyr_0098 0.56 -1.6
110,573 + Psyr_0098 0.60 +2.2
110,573 + Psyr_0098 0.60 -3.5
110,574 - Psyr_0098 0.60 -0.1
110,574 - Psyr_0098 0.60 +0.9
110,574 - Psyr_0098 0.60 -4.2
110,585 + Psyr_0098 0.61 +0.9
110,587 + Psyr_0098 0.61 +2.5
110,715 - Psyr_0098 0.67 -0.1
110,715 - Psyr_0098 0.67 -3.4
110,752 + Psyr_0098 0.69 -3.9
110,752 + Psyr_0098 0.69 -2.2
110,752 + Psyr_0098 0.69 +3.2
110,752 + Psyr_0098 0.69 -4.2
110,752 - Psyr_0098 0.69 -0.1
110,754 + Psyr_0098 0.70 -2.2
110,834 + Psyr_0098 0.74 -2.1
110,836 + Psyr_0098 0.74 -1.1
110,836 + Psyr_0098 0.74 -0.7
110,836 + Psyr_0098 0.74 -2.1
110,836 + Psyr_0098 0.74 -1.8
110,836 + Psyr_0098 0.74 +1.9
110,836 + Psyr_0098 0.74 -1.3
110,837 - Psyr_0098 0.74 -0.1
110,837 - Psyr_0098 0.74 -2.4
110,837 - Psyr_0098 0.74 -4.2
110,837 - Psyr_0098 0.74 -1.5
110,837 - Psyr_0098 0.74 +1.0
110,837 - Psyr_0098 0.74 -3.7
110,837 - Psyr_0098 0.74 -0.1
110,837 - Psyr_0098 0.74 -4.3
110,837 - Psyr_0098 0.74 -1.5
110,837 - Psyr_0098 0.74 -2.6
110,837 - Psyr_0098 0.74 -5.4
110,837 - Psyr_0098 0.74 -1.4
110,838 + Psyr_0098 0.74 -1.2
110,839 - Psyr_0098 0.74 +2.7
110,890 + Psyr_0098 0.77 -0.9
110,914 + Psyr_0098 0.78 -0.7
110,914 + Psyr_0098 0.78 -1.7
110,914 + Psyr_0098 0.78 +0.4
110,915 - Psyr_0098 0.78 -0.1
110,957 + Psyr_0098 0.80 +2.9
110,958 - Psyr_0098 0.80 +0.4
110,993 + Psyr_0098 0.82 +1.9
110,993 + Psyr_0098 0.82 -2.5
110,993 + Psyr_0098 0.82 -4.6
111,015 - Psyr_0098 0.83 -0.1
111,027 - Psyr_0098 0.84 -3.6
111,065 + Psyr_0098 0.86 +1.2
111,065 + Psyr_0098 0.86 -3.8
111,065 + Psyr_0098 0.86 +4.4
111,065 + Psyr_0098 0.86 -2.8
111,066 - Psyr_0098 0.86 -0.1
111,066 - Psyr_0098 0.86 -2.2
111,066 - Psyr_0098 0.86 -3.8
111,066 - Psyr_0098 0.86 -3.2
111,066 - Psyr_0098 0.86 +3.2
111,099 - Psyr_0098 0.88 -2.7
111,099 - Psyr_0098 0.88 -1.7
111,115 + Psyr_0098 0.89 -2.5
111,126 - Psyr_0098 0.89 -1.4
111,126 - Psyr_0098 0.89 -1.0
111,137 + -4.1
111,137 + +0.1
111,137 + +2.2
111,138 - -0.1
111,142 + -0.7
111,182 + +1.9
111,258 - -0.1
111,262 - -0.8
111,444 + Psyr_0099 0.53 -1.2
111,512 - Psyr_0099 0.86 -0.7
111,523 + -2.9
111,527 + -3.2
111,543 + -3.2
111,581 + -2.1
111,582 - -4.5
111,590 - -4.2
111,624 - -0.1
111,712 - +2.9
111,716 + -2.2
111,716 + -2.6
111,717 - -2.1
111,717 - +0.9
111,717 - -0.1
111,717 - -5.0
111,756 - -3.6
111,801 + -3.8
111,801 + +2.7
111,801 + -2.9
111,801 + +3.7
111,801 + -0.1
111,802 - -3.1
111,802 - -3.1
111,802 - +1.5
111,802 - +2.9
111,905 - -1.3
111,906 + -0.1
111,906 + +2.2
111,906 + -3.5
111,906 + -0.1
111,906 + -4.6
111,907 - -0.3
111,907 - -1.9
111,908 + -0.7
111,908 + -1.8
111,909 - -3.2
111,910 + -0.1
111,910 + -5.7
111,910 + +1.9
111,910 + -2.8
111,911 - -1.9
111,911 - -1.8
111,911 - -0.1
111,911 - -0.4
111,914 + -5.2
111,914 + -5.1
111,915 - -5.0
111,915 - -1.2
111,915 - -1.8
111,916 + -1.4
111,916 + -2.7
111,917 - -1.2
111,917 - -3.8
111,917 - -1.5
111,917 - +2.2
111,960 - -0.3
111,973 + +2.5
111,973 + +2.9
111,974 - +3.4
111,997 - -4.0
111,997 - -2.3
112,021 - +0.8
112,115 + -0.1
112,147 - -0.0
112,173 + -6.0
112,173 + -2.1
112,173 + -1.5

Or see this region's nucleotide sequence