Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0080

Experiment: KB with Mitomycin C 0.625 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Mitomycin C 0.625 ug/ml
85,621	+		Psyr_0079	0.32	-0.2
85,643	-		Psyr_0079	0.34	+0.5
85,690	-		Psyr_0079	0.37	+0.1
85,741	+		Psyr_0079	0.41	-1.2
85,741	+		Psyr_0079	0.41	+0.5
85,741	+		Psyr_0079	0.41	-0.4
85,741	+		Psyr_0079	0.41	+5.6
85,741	+		Psyr_0079	0.41	-0.6
85,741	+		Psyr_0079	0.41	-0.1
85,741	+		Psyr_0079	0.41	+0.7
85,741	+		Psyr_0079	0.41	-1.0
85,741	+		Psyr_0079	0.41	+1.0
85,741	+		Psyr_0079	0.41	+0.9
85,741	+		Psyr_0079	0.41	+0.5
85,741	+		Psyr_0079	0.41	+0.4
85,741	+		Psyr_0079	0.41	+3.5
85,741	+		Psyr_0079	0.41	+3.1
85,741	+		Psyr_0079	0.41	+4.7
85,741	+		Psyr_0079	0.41	-1.5
85,741	+		Psyr_0079	0.41	+3.1
85,741	+		Psyr_0079	0.41	-0.1
85,742	-		Psyr_0079	0.41	-2.5
85,742	-		Psyr_0079	0.41	-1.5
85,742	-		Psyr_0079	0.41	+2.2
85,742	-		Psyr_0079	0.41	-1.6
85,742	-		Psyr_0079	0.41	+0.3
85,742	-		Psyr_0079	0.41	+3.1
85,742	-		Psyr_0079	0.41	+1.3
85,742	-		Psyr_0079	0.41	-2.0
85,742	-		Psyr_0079	0.41	-3.2
85,742	-		Psyr_0079	0.41	+0.9
85,742	-		Psyr_0079	0.41	+3.1
85,742	-		Psyr_0079	0.41	-1.4
85,742	-		Psyr_0079	0.41	+0.9
85,742	-		Psyr_0079	0.41	+0.1
85,742	-		Psyr_0079	0.41	+5.2
85,742	-		Psyr_0079	0.41	-2.4
85,742	-		Psyr_0079	0.41	+4.3
85,801	+		Psyr_0079	0.46	-0.5
85,801	+		Psyr_0079	0.46	-4.0
85,801	+		Psyr_0079	0.46	-0.3
85,801	+		Psyr_0079	0.46	-4.5
85,802	-		Psyr_0079	0.46	+2.0
85,802	-		Psyr_0079	0.46	-0.1
85,802	-		Psyr_0079	0.46	-1.6
85,802	-		Psyr_0079	0.46	-0.1
85,802	-		Psyr_0079	0.46	+0.2
85,837	+		Psyr_0079	0.49	-0.4
85,837	+		Psyr_0079	0.49	-2.9
85,837	+		Psyr_0079	0.49	+2.5
85,838	-		Psyr_0079	0.49	-2.1
85,838	-		Psyr_0079	0.49	-0.3
85,838	-		Psyr_0079	0.49	-0.1
85,838	-		Psyr_0079	0.49	-0.3
85,838	-		Psyr_0079	0.49	-2.9
85,838	-		Psyr_0079	0.49	+0.8
85,858	+		Psyr_0079	0.51	-1.5
85,858	+		Psyr_0079	0.51	-1.1
85,858	+		Psyr_0079	0.51	-1.7
85,858	+		Psyr_0079	0.51	-0.5
85,858	+		Psyr_0079	0.51	+3.5
85,859	-		Psyr_0079	0.51	-1.1
85,859	-		Psyr_0079	0.51	-1.2
85,859	-		Psyr_0079	0.51	-1.4
85,859	-		Psyr_0079	0.51	-1.1
86,000	+		Psyr_0079	0.62	-0.8
86,001	-		Psyr_0079	0.62	+2.5
86,001	-		Psyr_0079	0.62	+3.5
86,001	-		Psyr_0079	0.62	-2.3
86,198	+		Psyr_0079	0.78	-2.8
86,198	+		Psyr_0079	0.78	+1.0
86,199	-		Psyr_0079	0.78	-0.1
86,199	-		Psyr_0079	0.78	+0.6
86,199	-		Psyr_0079	0.78	+0.9
86,199	-		Psyr_0079	0.78	+1.6
86,199	-		Psyr_0079	0.78	-0.2
86,236	+		Psyr_0079	0.81	-0.5
86,236	+		Psyr_0079	0.81	-1.0
86,236	+		Psyr_0079	0.81	-0.8
86,236	+		Psyr_0079	0.81	-1.5
86,236	+		Psyr_0079	0.81	-0.3
86,237	-		Psyr_0079	0.81	+2.9
86,237	-		Psyr_0079	0.81	-1.6
86,237	-		Psyr_0079	0.81	-1.2
86,237	-		Psyr_0079	0.81	+0.7
86,237	-		Psyr_0079	0.81	-0.1
86,237	-		Psyr_0079	0.81	-1.3
86,302	+		Psyr_0079	0.86	-0.2
86,303	-		Psyr_0079	0.86	-0.1
86,303	-		Psyr_0079	0.86	-0.7
86,303	-		Psyr_0079	0.86	-1.0
86,303	-		Psyr_0079	0.86	+1.5
86,404	+				+0.7
86,520	+				-1.0
86,697	-		Psyr_0080	0.28	+2.7
86,697	-		Psyr_0080	0.28	+1.9
86,697	-		Psyr_0080	0.28	+1.1
86,715	+		Psyr_0080	0.30	+0.7
86,715	+		Psyr_0080	0.30	+2.9
86,716	-		Psyr_0080	0.31	-2.1
86,716	-		Psyr_0080	0.31	-3.5
86,716	-		Psyr_0080	0.31	-0.3
86,798	+		Psyr_0080	0.41	+3.1
86,812	+		Psyr_0080	0.42	-2.1
86,812	+		Psyr_0080	0.42	+3.2
86,812	+		Psyr_0080	0.42	+0.2
86,812	+		Psyr_0080	0.42	+3.1
86,812	+		Psyr_0080	0.42	+3.1
86,812	+		Psyr_0080	0.42	-2.0
86,812	+		Psyr_0080	0.42	+2.2
86,812	+		Psyr_0080	0.42	+3.1
86,812	+		Psyr_0080	0.42	-1.2
86,812	+		Psyr_0080	0.42	-0.1
86,812	+		Psyr_0080	0.42	-0.1
86,812	+		Psyr_0080	0.42	+3.7
86,812	+		Psyr_0080	0.42	+5.3
86,812	+		Psyr_0080	0.42	-0.3
86,812	+		Psyr_0080	0.42	-1.2
86,812	+		Psyr_0080	0.42	-4.0
86,812	+		Psyr_0080	0.42	+4.2
86,813	-		Psyr_0080	0.42	-3.2
86,813	-		Psyr_0080	0.42	-2.6
86,813	-		Psyr_0080	0.42	-1.9
86,813	-		Psyr_0080	0.42	+3.2
86,813	-		Psyr_0080	0.42	+0.7
86,813	-		Psyr_0080	0.42	-0.4
86,813	-		Psyr_0080	0.42	-3.0
86,813	-		Psyr_0080	0.42	-0.1
86,813	-		Psyr_0080	0.42	+0.7
86,813	-		Psyr_0080	0.42	+3.2
86,813	-		Psyr_0080	0.42	+1.5
86,813	-		Psyr_0080	0.42	+0.8
86,813	-		Psyr_0080	0.42	+1.1
86,813	-		Psyr_0080	0.42	-3.8
86,813	-		Psyr_0080	0.42	+3.1
86,813	-		Psyr_0080	0.42	-2.9
86,813	-		Psyr_0080	0.42	+0.7
86,813	-		Psyr_0080	0.42	+2.7
86,813	-		Psyr_0080	0.42	+4.2
86,813	-		Psyr_0080	0.42	+0.2
86,813	-		Psyr_0080	0.42	-1.7
86,813	-		Psyr_0080	0.42	-1.0
86,813	-		Psyr_0080	0.42	-1.7
86,813	-		Psyr_0080	0.42	-0.1
86,813	-		Psyr_0080	0.42	+4.3
86,813	-		Psyr_0080	0.42	-0.8
86,813	-		Psyr_0080	0.42	-3.8
86,871	+		Psyr_0080	0.50	-1.1
86,871	+		Psyr_0080	0.50	-1.1
86,871	+		Psyr_0080	0.50	+1.5
86,871	+		Psyr_0080	0.50	+1.9
86,871	+		Psyr_0080	0.50	-0.4
87,121	+		Psyr_0080	0.80	-1.5
87,121	+		Psyr_0080	0.80	-0.0
87,122	-		Psyr_0080	0.80	-0.6
87,341	+				-2.1
87,456	+				-0.1
87,456	+				-1.0
87,456	+				-1.3
87,456	+				+4.3
87,456	+				-0.4
87,456	+				-4.4
87,456	+				-0.1
87,456	+				-0.3
87,456	+				+0.3
87,456	+				-0.6
87,457	-				+0.4
87,457	-				-0.2
87,457	-				+2.2
87,457	-				+1.1
87,457	-				+1.5
87,457	-				-1.1
87,457	-				+3.1
87,459	-				-1.1
87,483	-				+2.5
87,483	-				-0.5
87,788	+		Psyr_0081	0.31	-1.0
87,789	-		Psyr_0081	0.31	-2.1