Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0031

Experiment: KB with Mitomycin C 0.625 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Mitomycin C 0.625 ug/ml
34,524	+		Psyr_0030	0.18	+1.5
34,524	+		Psyr_0030	0.18	-1.6
34,525	-		Psyr_0030	0.18	-2.4
34,532	+		Psyr_0030	0.19	+1.1
34,609	+		Psyr_0030	0.27	-1.8
34,978	+		Psyr_0030	0.66	-0.1
34,978	+		Psyr_0030	0.66	-0.1
34,978	+		Psyr_0030	0.66	+2.2
34,978	+		Psyr_0030	0.66	+0.6
34,978	+		Psyr_0030	0.66	+4.3
34,978	+		Psyr_0030	0.66	-0.8
34,978	+		Psyr_0030	0.66	+3.4
34,979	-		Psyr_0030	0.66	-1.5
35,037	+		Psyr_0030	0.72	-1.8
35,037	+		Psyr_0030	0.72	+3.4
35,037	+		Psyr_0030	0.72	+0.5
35,037	+		Psyr_0030	0.72	-0.8
35,037	+		Psyr_0030	0.72	+3.2
35,037	+		Psyr_0030	0.72	-1.0
35,038	-		Psyr_0030	0.72	+2.7
35,038	-		Psyr_0030	0.72	+0.3
35,038	-		Psyr_0030	0.72	-0.1
35,038	-		Psyr_0030	0.72	-5.2
35,038	-		Psyr_0030	0.72	-2.9
35,169	+		Psyr_0030	0.86	-1.1
35,169	+		Psyr_0030	0.86	+0.6
35,172	+		Psyr_0030	0.86	-1.2
35,172	+		Psyr_0030	0.86	-0.4
35,172	+		Psyr_0030	0.86	-2.5
35,172	+		Psyr_0030	0.86	+4.0
35,172	+		Psyr_0030	0.86	-1.8
35,172	+		Psyr_0030	0.86	-0.1
35,172	+		Psyr_0030	0.86	+0.1
35,172	+		Psyr_0030	0.86	-0.3
35,173	-		Psyr_0030	0.87	+0.9
35,173	-		Psyr_0030	0.87	+0.5
35,173	-		Psyr_0030	0.87	+0.0
35,173	-		Psyr_0030	0.87	+4.0
35,173	-		Psyr_0030	0.87	+4.4
35,173	-		Psyr_0030	0.87	-1.1
35,298	+				-0.8
35,298	+				+2.2
35,298	+				+3.2
35,298	+				+3.4
35,298	+				-0.3
35,298	+				-0.8
35,298	+				-0.4
35,299	-				-0.1
35,299	-				+4.1
35,299	-				+2.2
35,299	-				-1.6
35,299	-				-0.4
35,299	-				-1.5
35,299	-				+3.1
35,299	-				+0.2
35,299	-				-0.1
35,301	+				+0.6
35,302	-				+4.6
35,302	-				-0.7
35,302	-				+2.5
35,302	-				-0.7
35,302	-				-1.8
35,302	-				-1.1
35,365	+				+3.5
35,365	+				-3.0
35,365	+				-2.5
35,366	-				-0.8
35,366	-				-1.9
35,366	-				-0.8
35,368	-				-1.7
35,429	+				-1.1
35,429	+				+0.9
35,429	+				+3.6
35,430	-				-3.3
35,430	-				+1.5
35,455	+				-3.2
35,455	+				-2.2
35,455	+				-1.0
35,456	-				-1.4
35,456	-				-0.4
35,456	-				+0.7
35,456	-				-1.5
35,456	-				-2.8
35,481	+				-0.8
35,481	+				-1.8
35,482	-				-3.7
35,482	-				-1.1
35,509	+				+4.1
35,509	+				-1.8
35,509	+				-1.2
35,526	+				-1.0
35,526	+				-0.7
35,526	+				-0.1
35,526	+				+1.9
35,526	+				-0.8
35,526	+				-2.5
35,526	+				-1.1
35,527	-				-1.8
35,527	-				+3.4
35,527	-				+3.9
35,527	-				-0.1
35,564	+		Psyr_0031	0.14	-1.0
35,564	+		Psyr_0031	0.14	-2.2
35,716	+		Psyr_0031	0.33	-0.8
35,716	+		Psyr_0031	0.33	-0.6
35,717	-		Psyr_0031	0.33	-3.4
35,802	+		Psyr_0031	0.43	+4.0
35,802	+		Psyr_0031	0.43	-5.2
35,803	-		Psyr_0031	0.43	-0.2
35,803	-		Psyr_0031	0.43	+3.5
35,803	-		Psyr_0031	0.43	-5.5
35,835	+		Psyr_0031	0.47	+1.5
35,835	+		Psyr_0031	0.47	+0.4
35,838	+		Psyr_0031	0.48	+2.0
35,838	+		Psyr_0031	0.48	-0.4
35,838	+		Psyr_0031	0.48	-0.1
35,838	+		Psyr_0031	0.48	+0.6
35,838	+		Psyr_0031	0.48	-0.6
35,838	+		Psyr_0031	0.48	+1.2
35,838	+		Psyr_0031	0.48	-0.1
35,838	+		Psyr_0031	0.48	-1.9
35,839	-		Psyr_0031	0.48	-2.4
35,839	-		Psyr_0031	0.48	-0.1
35,839	-		Psyr_0031	0.48	-0.9
35,839	-		Psyr_0031	0.48	+1.9
35,839	-		Psyr_0031	0.48	-2.2
35,839	-		Psyr_0031	0.48	+0.4
35,927	+		Psyr_0031	0.58	+0.2
35,949	+		Psyr_0031	0.61	+0.7
35,950	-		Psyr_0031	0.61	-3.4
35,950	-		Psyr_0031	0.61	-0.3
35,950	-		Psyr_0031	0.61	-0.1
35,950	-		Psyr_0031	0.61	-0.1
35,950	-		Psyr_0031	0.61	+3.1
36,162	+		Psyr_0031	0.87	-0.1
36,162	+		Psyr_0031	0.87	-1.8
36,162	+		Psyr_0031	0.87	-0.7
36,163	-		Psyr_0031	0.87	+3.4
36,163	-		Psyr_0031	0.87	-0.8
36,163	-		Psyr_0031	0.87	-0.6
36,327	+				+2.9
36,327	+				-0.5
36,328	-				-2.3
36,328	-				+1.6
36,328	-				+3.4
36,340	+				-2.5
36,340	+				-0.2
36,341	-				-1.3
36,341	-				-3.5
36,342	+				+2.7
36,454	+				-1.2
36,454	+				-0.1
36,454	+				-2.8
36,454	+				+2.7
36,454	+				-1.4
36,454	+				-1.0
36,454	+				-1.1
36,454	+				-0.6
36,454	+				+0.3
36,454	+				-0.2
36,454	+				-3.0
36,455	-				+3.6
36,455	-				-3.2
36,455	-				+0.1
36,455	-				-0.2
36,456	+				-0.2
36,564	+				+0.6
36,564	+				-1.7
36,633	+		Psyr_0032	0.18	+1.9
36,633	+		Psyr_0032	0.18	+2.7
36,633	+		Psyr_0032	0.18	-0.6
36,633	+		Psyr_0032	0.18	+1.9
36,634	-		Psyr_0032	0.18	+1.6
36,634	-		Psyr_0032	0.18	+3.7
36,634	-		Psyr_0032	0.18	+1.0
36,634	-		Psyr_0032	0.18	+0.6
36,634	-		Psyr_0032	0.18	-0.5
36,645	+		Psyr_0032	0.21	+0.7
36,646	-		Psyr_0032	0.21	-0.1
36,713	+		Psyr_0032	0.33	+4.6
36,713	+		Psyr_0032	0.33	-0.4
36,713	+		Psyr_0032	0.33	-2.2
36,714	-		Psyr_0032	0.34	-0.1
36,714	-		Psyr_0032	0.34	+3.6
36,902	-		Psyr_0032	0.69	-2.2
37,045	+				+0.7
37,140	+				-3.5
37,140	+				-1.8
37,140	+				+4.5
37,140	+				-1.7
37,140	+				+0.3
37,140	+				-1.9
37,140	+				-2.1
37,140	+				+3.4
37,140	+				-0.5
37,140	+				-3.8
37,140	+				-0.1
37,141	-				-1.9
37,141	-				+0.5
37,141	-				+2.7
37,141	-				+1.0
37,141	-				+4.7
37,141	-				-0.9
37,141	-				-1.7
37,141	-				-0.7
37,141	-				+1.8
37,141	-				+1.6
37,144	+				-0.3
37,144	+				-0.1
37,144	+				-0.1
37,144	+				-2.5
37,144	+				+4.6
37,144	+				-0.8
37,144	+				-0.9
37,145	-				+0.6
37,145	-				-1.1
37,145	-				-0.1
37,145	-				+1.3
37,145	-				-0.5
37,145	-				-0.6
37,145	-				+1.5
37,145	-				-0.5
37,145	-				-0.7
37,176	-				+3.9
37,207	-				-0.2
37,207	-				+0.5
37,210	+				+1.5
37,210	+				-1.1
37,211	-				-0.1
37,211	-				+5.0
37,211	-				+0.6
37,211	-				+5.4
37,211	-				-0.1