Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10785

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS10780 and HSERO_RS10785 are separated by 48 nucleotidesHSERO_RS10785 and HSERO_RS10790 are separated by 29 nucleotides HSERO_RS10780: HSERO_RS10780 - glutathione ABC transporter ATP-binding protein, at 2,422,494 to 2,424,476 _RS10780 HSERO_RS10785: HSERO_RS10785 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase, at 2,424,525 to 2,425,415 _RS10785 HSERO_RS10790: HSERO_RS10790 - succinyl-diaminopimelate desuccinylase, at 2,425,445 to 2,426,572 _RS10790 Position (kb) 2424 2425 2426Strain fitness (log2 ratio) -1 0 1at 2424.378 kb on + strandat 2424.383 kb on + strandat 2424.511 kb on - strandat 2424.511 kb on - strandat 2424.656 kb on + strand, within HSERO_RS10785at 2424.973 kb on + strand, within HSERO_RS10785at 2425.236 kb on - strand, within HSERO_RS10785at 2425.382 kb on - strandat 2425.419 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,424,378 + +0.2
2,424,383 + -0.0
2,424,511 - +0.4
2,424,511 - +0.7
2,424,656 + HSERO_RS10785 0.15 -1.0
2,424,973 + HSERO_RS10785 0.50 -0.3
2,425,236 - HSERO_RS10785 0.80 -1.6
2,425,382 - -0.3
2,425,419 - -0.3

Or see this region's nucleotide sequence