Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03892

Experiment: PYE with copper (II) chloride 0.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with copper (II) chloride 0.25 mM
1,626,554	-				-0.7
1,626,584	-				+1.4
1,626,659	+		CCNA_01517	0.11	-1.1
1,626,667	-		CCNA_01517	0.12	-1.2
1,626,674	-		CCNA_01517	0.12	-1.2
1,626,688	+		CCNA_01517	0.14	+0.3
1,626,742	-		CCNA_01517	0.19	+0.6
1,626,742	-		CCNA_01517	0.19	+0.2
1,626,746	+		CCNA_01517	0.19	+1.3
1,626,772	-		CCNA_01517	0.22	-1.5
1,626,778	-		CCNA_01517	0.22	+0.2
1,626,793	+		CCNA_01517	0.24	-1.0
1,626,801	-		CCNA_01517	0.25	-1.9
1,626,803	+		CCNA_01517	0.25	-0.7
1,626,806	-		CCNA_01517	0.25	+0.3
1,626,826	-		CCNA_01517	0.27	-1.0
1,626,831	-		CCNA_01517	0.28	-2.1
1,626,834	+		CCNA_01517	0.28	-1.1
1,626,958	+		CCNA_01517	0.40	-0.5
1,626,976	+		CCNA_01517	0.42	-0.6
1,627,024	+		CCNA_01517	0.46	-1.0
1,627,027	-		CCNA_01517	0.47	+0.5
1,627,031	+		CCNA_01517	0.47	-0.6
1,627,039	-		CCNA_01517	0.48	-1.7
1,627,039	-		CCNA_01517	0.48	-0.2
1,627,039	-		CCNA_01517	0.48	-0.0
1,627,039	-		CCNA_01517	0.48	+0.1
1,627,079	-		CCNA_01517	0.52	+0.8
1,627,092	-		CCNA_01517	0.53	+0.1
1,627,101	+		CCNA_01517	0.54	-3.0
1,627,119	-		CCNA_01517	0.55	-0.6
1,627,132	+		CCNA_01517	0.57	-0.4
1,627,171	-		CCNA_01517	0.61	+0.4
1,627,292	+		CCNA_01517	0.72	+2.2
1,627,293	+		CCNA_01517	0.72	-1.7
1,627,293	+		CCNA_01517	0.72	+0.6
1,627,300	-		CCNA_01517	0.73	-0.3
1,627,300	-		CCNA_01517	0.73	+2.9
1,627,300	-		CCNA_01517	0.73	-1.1
1,627,300	-		CCNA_01517	0.73	-1.1
1,627,300	-		CCNA_01517	0.73	-2.3
1,627,301	-		CCNA_01517	0.73	-0.4
1,627,301	-		CCNA_01517	0.73	-0.5
1,627,301	-		CCNA_01517	0.73	+0.0
1,627,308	+		CCNA_01517	0.74	+0.1
1,627,311	-		CCNA_01517	0.74	+0.3
1,627,316	-		CCNA_01517	0.75	-0.7
1,627,318	+		CCNA_01517	0.75	-1.5
1,627,349	+		CCNA_01517	0.78	-0.9
1,627,368	-		CCNA_01517	0.80	-0.9
1,627,378	+		CCNA_01517	0.81	-1.7
1,627,455	+		CCNA_01517	0.88	-1.7
1,627,463	-		CCNA_01517	0.89	+0.3
1,627,489	-				+1.5
1,627,493	-				+0.7
1,627,493	-				+2.1
1,627,589	+				-1.4
1,627,607	+		CCNA_03892	0.11	-0.1
1,627,615	-		CCNA_03892	0.12	+1.8
1,627,628	+		CCNA_03892	0.14	+0.6
1,627,714	-		CCNA_03892	0.27	+2.5
1,627,746	+		CCNA_03892	0.32	-1.4
1,627,758	-		CCNA_03892	0.34	+2.8
1,627,781	+		CCNA_03892	0.38	+0.7
1,627,781	+		CCNA_03892	0.38	+0.5
1,627,781	+		CCNA_03892	0.38	+0.7
1,627,789	-		CCNA_03892	0.39	+1.4
1,627,789	-		CCNA_03892	0.39	-0.1
1,627,797	-		CCNA_03892	0.40	+3.7
1,627,802	+		CCNA_03892	0.41	-0.8
1,627,802	+		CCNA_03892	0.41	-0.5
1,627,802	+		CCNA_03892	0.41	-1.5
1,627,802	+		CCNA_03892	0.41	-0.9
1,627,847	+		CCNA_03892	0.48	+0.3
1,627,868	-		CCNA_03892	0.51	+1.6
1,627,870	+		CCNA_03892	0.51	-0.5
1,627,870	+		CCNA_03892	0.51	+0.0
1,627,878	-		CCNA_03892	0.53	+0.8
1,627,957	+				+2.2
1,627,957	+		CCNA_03892	0.65	-0.5
1,627,965	-		CCNA_03892	0.66	+1.5
1,627,965	-		CCNA_03892	0.66	+1.5
1,627,965	-		CCNA_03892	0.66	+0.9
1,627,965	-		CCNA_03892	0.66	-0.5
1,627,965	-		CCNA_03892	0.66	+0.9
1,627,965	-		CCNA_03892	0.66	+2.4
1,627,965	-		CCNA_03892	0.66	+1.2
1,627,977	+		CCNA_03892	0.68	-1.4
1,627,998	-		CCNA_03892	0.71	+0.8
1,628,013	+		CCNA_03892	0.73	-0.1
1,628,013	+		CCNA_03892	0.73	-0.2
1,628,016	-		CCNA_03892	0.74	+1.8
1,628,028	+		CCNA_03892	0.76	-1.8
1,628,033	+		CCNA_03892	0.77	-0.7
1,628,035	-		CCNA_03892	0.77	+2.0
1,628,041	-		CCNA_03892	0.78	+1.8
1,628,055	+		CCNA_03892	0.80	-0.4
1,628,060	+		CCNA_03892	0.81	-1.0
1,628,063	-		CCNA_03892	0.81	+1.0
1,628,134	+				+0.2
1,628,163	-				+0.2
1,628,169	-				+0.7
1,628,198	+				+0.7
1,628,224	+				+1.2
1,628,225	+				-1.7
1,628,303	+				-0.7
1,628,344	+				+0.1
1,628,344	+				-0.4
1,628,344	+				-0.9
1,628,344	+				+0.2
1,628,352	-				+0.1
1,628,352	-				+0.1
1,628,352	-				+2.0
1,628,352	-				-0.2
1,628,381	+		CCNA_01519	0.11	-1.2
1,628,386	+		CCNA_01519	0.12	-1.6
1,628,394	-		CCNA_01519	0.13	-0.7
1,628,394	-		CCNA_01519	0.13	-1.3
1,628,394	-		CCNA_01519	0.13	+1.1
1,628,440	+		CCNA_01519	0.18	-0.1
1,628,448	-		CCNA_01519	0.19	-1.2
1,628,448	-		CCNA_01519	0.19	+1.5
1,628,448	-		CCNA_01519	0.19	+0.6
1,628,466	+		CCNA_01519	0.22	+0.7
1,628,473	+		CCNA_01519	0.23	+1.8
1,628,473	+		CCNA_01519	0.23	+0.3
1,628,473	+		CCNA_01519	0.23	+1.0
1,628,481	-		CCNA_01519	0.23	-1.0
1,628,481	-		CCNA_01519	0.23	-0.5
1,628,481	-		CCNA_01519	0.23	-0.5
1,628,481	-		CCNA_01519	0.23	-0.7
1,628,483	+		CCNA_01519	0.24	+0.1
1,628,491	-		CCNA_01519	0.25	+0.2
1,628,491	-		CCNA_01519	0.25	-0.2
1,628,491	-		CCNA_01519	0.25	-1.1
1,628,516	-		CCNA_01519	0.28	+0.3
1,628,566	+		CCNA_01519	0.34	+1.5
1,628,567	+		CCNA_01519	0.34	+1.1
1,628,590	+		CCNA_01519	0.37	+0.8
1,628,613	+		CCNA_01519	0.40	-0.0
1,628,661	-		CCNA_01519	0.46	-0.5
1,628,672	+		CCNA_01519	0.47	+0.3
1,628,672	+		CCNA_01519	0.47	-1.1
1,628,702	+		CCNA_01519	0.51	+0.0
1,628,702	+		CCNA_01519	0.51	+1.6
1,628,702	+		CCNA_01519	0.51	-1.8
1,628,710	-		CCNA_01519	0.52	-1.1
1,628,710	-		CCNA_01519	0.52	-1.2
1,628,714	-		CCNA_01519	0.52	-0.4
1,628,765	+		CCNA_01519	0.58	+1.2
1,628,817	+		CCNA_01519	0.65	-0.1
1,628,817	+		CCNA_01519	0.65	+1.1
1,628,825	-		CCNA_01519	0.66	-0.9
1,628,829	+		CCNA_01519	0.66	+0.8
1,628,859	-		CCNA_01519	0.70	-0.0
1,628,877	-		CCNA_01519	0.72	+0.3
1,628,908	+		CCNA_01519	0.76	+0.4
1,628,908	+		CCNA_01519	0.76	+0.4
1,628,908	+		CCNA_01519	0.76	-0.7
1,628,912	+		CCNA_01519	0.77	-1.6
1,628,912	+		CCNA_01519	0.77	-0.5
1,628,916	-		CCNA_01519	0.77	+0.1
1,628,916	-		CCNA_01519	0.77	-0.5
1,628,916	-		CCNA_01519	0.77	-0.2
1,628,916	-		CCNA_01519	0.77	-0.6
1,628,927	+		CCNA_01519	0.78	-0.5
1,628,929	+		CCNA_01519	0.79	+0.3
1,628,964	-		CCNA_01519	0.83	-0.5
1,628,999	-				+1.2
1,629,017	-		CCNA_01519	0.89	+0.4
1,629,050	+				-0.2
1,629,051	+				+0.2
1,629,051	+				+0.8
1,629,051	+				-0.1
1,629,051	+				-0.6
1,629,051	+				-0.2
1,629,051	+				+0.9
1,629,052	+				+0.7
1,629,059	-				-1.1
1,629,059	-				+0.4
1,629,059	-				+0.4
1,629,059	-				+2.2
1,629,059	-				+0.9
1,629,060	-				-1.3
1,629,061	+				+1.3
1,629,095	-				-0.9
1,629,152	+				+0.1
1,629,174	-		CCNA_01520	0.11	-0.7
1,629,177	+		CCNA_01520	0.11	-0.3