Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02888

Experiment: PYE with copper (II) chloride 0.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with copper (II) chloride 0.25 mM
3,035,188	-				-0.7
3,035,206	+				+0.5
3,035,206	+				-0.3
3,035,206	+				-1.2
3,035,206	+				-0.2
3,035,206	+				+1.3
3,035,230	+				-0.4
3,035,259	-				-1.0
3,035,261	+				-1.9
3,035,292	-				+2.8
3,035,309	+		CCNA_02887	0.11	-0.5
3,035,309	+		CCNA_02887	0.11	+1.1
3,035,309	+		CCNA_02887	0.11	-0.2
3,035,312	-		CCNA_02887	0.12	-0.8
3,035,312	-		CCNA_02887	0.12	-1.5
3,035,317	-		CCNA_02887	0.12	-2.6
3,035,319	+		CCNA_02887	0.13	-0.5
3,035,329	+		CCNA_02887	0.14	+1.3
3,035,329	+		CCNA_02887	0.14	-0.5
3,035,337	-		CCNA_02887	0.15	-0.2
3,035,352	+		CCNA_02887	0.17	-0.2
3,035,352	-		CCNA_02887	0.17	+0.0
3,035,357	+		CCNA_02887	0.17	-1.6
3,035,360	-		CCNA_02887	0.18	-0.9
3,035,372	+		CCNA_02887	0.19	-1.5
3,035,375	-		CCNA_02887	0.20	+0.2
3,035,379	+		CCNA_02887	0.20	-0.3
3,035,379	+		CCNA_02887	0.20	-0.7
3,035,379	+		CCNA_02887	0.20	+0.0
3,035,379	+		CCNA_02887	0.20	-0.5
3,035,379	+		CCNA_02887	0.20	-0.9
3,035,379	+		CCNA_02887	0.20	+0.3
3,035,379	+		CCNA_02887	0.20	-1.9
3,035,387	-		CCNA_02887	0.21	-1.1
3,035,387	-		CCNA_02887	0.21	-0.4
3,035,387	-		CCNA_02887	0.21	-0.4
3,035,387	-		CCNA_02887	0.21	+0.7
3,035,387	-		CCNA_02887	0.21	+1.0
3,035,387	-		CCNA_02887	0.21	-1.8
3,035,387	-		CCNA_02887	0.21	+0.3
3,035,387	-		CCNA_02887	0.21	+0.1
3,035,387	-		CCNA_02887	0.21	+1.5
3,035,399	+		CCNA_02887	0.23	-0.3
3,035,400	+		CCNA_02887	0.23	+0.7
3,035,407	-		CCNA_02887	0.24	+0.4
3,035,417	-		CCNA_02887	0.25	-0.7
3,035,433	-		CCNA_02887	0.27	+0.1
3,035,447	+		CCNA_02887	0.29	-1.3
3,035,464	+		CCNA_02887	0.31	-1.3
3,035,464	+		CCNA_02887	0.31	-1.0
3,035,466	-		CCNA_02887	0.31	+0.9
3,035,475	+		CCNA_02887	0.32	+0.4
3,035,475	+		CCNA_02887	0.32	+0.1
3,035,475	+		CCNA_02887	0.32	+0.0
3,035,475	+		CCNA_02887	0.32	-1.0
3,035,482	-		CCNA_02887	0.33	-1.3
3,035,483	-		CCNA_02887	0.33	+0.1
3,035,483	-		CCNA_02887	0.33	+1.2
3,035,483	-		CCNA_02887	0.33	-1.2
3,035,483	-		CCNA_02887	0.33	+0.6
3,035,486	+		CCNA_02887	0.33	+0.1
3,035,491	+		CCNA_02887	0.34	-0.5
3,035,493	-		CCNA_02887	0.34	-0.5
3,035,493	-		CCNA_02887	0.34	-0.3
3,035,540	+		CCNA_02887	0.40	+0.3
3,035,540	+		CCNA_02887	0.40	+0.4
3,035,548	-		CCNA_02887	0.41	-0.6
3,035,553	-		CCNA_02887	0.42	-1.6
3,035,562	+		CCNA_02887	0.43	+0.7
3,035,593	-		CCNA_02887	0.47	-1.0
3,035,598	-		CCNA_02887	0.47	+0.7
3,035,603	-		CCNA_02887	0.48	-0.9
3,035,619	+		CCNA_02887	0.50	-1.0
3,035,627	-		CCNA_02887	0.51	-0.9
3,035,627	-		CCNA_02887	0.51	-1.5
3,035,631	+		CCNA_02887	0.51	-0.2
3,035,631	+		CCNA_02887	0.51	-1.3
3,035,639	-		CCNA_02887	0.52	+2.0
3,035,641	+		CCNA_02887	0.52	-1.2
3,035,721	+		CCNA_02887	0.62	-1.2
3,035,768	-		CCNA_02887	0.68	+0.1
3,035,775	+		CCNA_02887	0.69	-0.0
3,035,775	+		CCNA_02887	0.69	+0.4
3,035,775	+		CCNA_02887	0.69	-0.2
3,035,785	+		CCNA_02887	0.70	-0.9
3,035,799	-		CCNA_02887	0.72	-1.6
3,035,799	-		CCNA_02887	0.72	+0.1
3,035,799	-		CCNA_02887	0.72	+0.9
3,035,815	-		CCNA_02887	0.74	+1.0
3,035,835	+		CCNA_02887	0.76	+1.1
3,035,843	-		CCNA_02887	0.77	-0.7
3,035,849	+		CCNA_02887	0.78	+0.9
3,035,849	+		CCNA_02887	0.78	+0.8
3,035,849	+		CCNA_02887	0.78	-0.1
3,035,854	+		CCNA_02887	0.79	-0.7
3,035,857	-		CCNA_02887	0.79	+0.8
3,035,857	-		CCNA_02887	0.79	+1.1
3,035,857	-		CCNA_02887	0.79	+0.0
3,035,857	-		CCNA_02887	0.79	+0.3
3,035,857	-		CCNA_02887	0.79	+0.2
3,035,857	-		CCNA_02887	0.79	+2.1
3,035,920	+		CCNA_02887	0.87	+1.7
3,035,961	+				+0.6
3,035,996	+				-0.4
3,036,006	+				+0.7
3,036,024	+				+1.4
3,036,050	+				+0.3
3,036,050	-				+1.0
3,036,108	+				+0.2
3,036,111	-				+0.4
3,036,135	-				-0.5
3,036,250	+				-1.5
3,036,258	-				-0.5
3,036,264	-				+0.7
3,036,279	-				-0.1
3,036,279	-				-0.3
3,036,363	-		CCNA_02888	0.17	-0.2
3,036,384	+		CCNA_02888	0.19	-0.1
3,036,384	+		CCNA_02888	0.19	+0.5
3,036,390	+		CCNA_02888	0.19	-0.2
3,036,392	-		CCNA_02888	0.19	-0.1
3,036,449	+		CCNA_02888	0.25	-1.7
3,036,449	+		CCNA_02888	0.25	+0.7
3,036,457	-		CCNA_02888	0.26	-1.1
3,036,457	-		CCNA_02888	0.26	+0.8
3,036,485	+		CCNA_02888	0.28	+3.0
3,036,485	+		CCNA_02888	0.28	-1.0
3,036,485	+		CCNA_02888	0.28	+1.9
3,036,579	-		CCNA_02888	0.37	-0.5
3,036,594	+		CCNA_02888	0.38	-1.3
3,036,597	-		CCNA_02888	0.39	-0.9
3,036,597	-		CCNA_02888	0.39	+0.3
3,036,675	-		CCNA_02888	0.46	+0.3
3,036,675	-		CCNA_02888	0.46	+2.3
3,036,696	+		CCNA_02888	0.48	-0.6
3,036,697	-		CCNA_02888	0.48	+1.5
3,036,722	-		CCNA_02888	0.50	+1.5
3,036,722	-		CCNA_02888	0.50	-1.1
3,036,723	-		CCNA_02888	0.51	-0.0
3,036,726	-		CCNA_02888	0.51	-1.1
3,036,728	+		CCNA_02888	0.51	-0.7
3,036,733	+		CCNA_02888	0.51	+2.6
3,036,733	+		CCNA_02888	0.51	-2.0
3,036,736	-		CCNA_02888	0.52	-1.1
3,036,781	-		CCNA_02888	0.56	+0.2
3,036,792	+		CCNA_02888	0.57	-1.8
3,036,792	+		CCNA_02888	0.57	-1.9
3,036,800	-		CCNA_02888	0.58	+0.9
3,036,800	-		CCNA_02888	0.58	-0.6
3,036,805	-		CCNA_02888	0.58	+2.1
3,036,805	-		CCNA_02888	0.58	-0.0
3,036,892	-		CCNA_02888	0.66	-0.4
3,036,901	+		CCNA_02888	0.67	-1.2
3,036,901	+		CCNA_02888	0.67	+0.4
3,036,909	-		CCNA_02888	0.68	-1.5
3,036,909	-		CCNA_02888	0.68	+0.2
3,036,923	+		CCNA_02888	0.69	-1.7
3,036,980	+		CCNA_02888	0.75	-1.4
3,036,980	+		CCNA_02888	0.75	-1.3
3,036,988	-		CCNA_02888	0.75	+2.5
3,036,988	-		CCNA_02888	0.75	+0.7
3,036,993	-		CCNA_02888	0.76	-0.3
3,036,993	-		CCNA_02888	0.76	+0.0
3,036,993	-		CCNA_02888	0.76	-1.6
3,036,993	-		CCNA_02888	0.76	-0.1
3,037,017	-		CCNA_02888	0.78	-2.6
3,037,086	-		CCNA_02888	0.85	-0.8
3,037,100	+		CCNA_02888	0.86	-0.3
3,037,101	+		CCNA_02888	0.86	+1.1
3,037,115	+		CCNA_02888	0.87	-0.8
3,037,163	+				+3.6
3,037,163	+				-1.4
3,037,170	+				+0.1
3,037,170	+				-0.7
3,037,170	+				+1.3
3,037,191	+				+0.0
3,037,221	-				+1.3
3,037,225	+				-0.8
3,037,241	-				+0.3
3,037,276	-				-0.6
3,037,317	+				-1.5
3,037,317	+				+0.5
3,037,325	-				-2.1
3,037,363	-				-0.1
3,037,378	-				-0.9
3,037,379	-				+0.4
3,037,380	-				-1.4
3,037,380	-				+3.9
3,037,380	-				+0.5
3,037,390	+				-0.3
3,037,393	-				-0.2
3,037,398	+				-2.5
3,037,404	-				+0.6
3,037,430	-				+0.4
3,037,434	+				+0.6
3,037,501	+				-1.1
3,037,513	+		CCNA_02889	0.12	-1.4
3,037,532	-		CCNA_02889	0.16	+1.0
3,037,535	+				+1.6
3,037,535	+		CCNA_02889	0.16	+1.2
3,037,543	-		CCNA_02889	0.18	+0.3
3,037,548	-		CCNA_02889	0.19	-0.2
3,037,553	-		CCNA_02889	0.20	+1.5
3,037,555	+		CCNA_02889	0.20	+2.3
3,037,563	-		CCNA_02889	0.22	+1.2
3,037,563	-		CCNA_02889	0.22	+1.4
3,037,563	-		CCNA_02889	0.22	+1.4
3,037,599	+		CCNA_02889	0.29	-0.0
3,037,606	-		CCNA_02889	0.30	+0.6
3,037,643	+		CCNA_02889	0.37	-1.2
3,037,666	+		CCNA_02889	0.42	+0.9
3,037,674	-		CCNA_02889	0.44	-0.5
3,037,674	-		CCNA_02889	0.44	+1.0
3,037,725	+		CCNA_02889	0.54	+0.4
3,037,733	-		CCNA_02889	0.55	+0.6
3,037,744	-		CCNA_02889	0.57	+1.0
3,037,750	-		CCNA_02889	0.59	+0.3
3,037,751	-		CCNA_02889	0.59	+0.5
3,037,763	+		CCNA_02889	0.61	-0.9
3,037,763	+		CCNA_02889	0.61	-1.2
3,037,763	+		CCNA_02889	0.61	-1.5
3,037,763	+		CCNA_02889	0.61	+0.6
3,037,763	+		CCNA_02889	0.61	+0.1
3,037,763	+		CCNA_02889	0.61	+1.9
3,037,771	-		CCNA_02889	0.63	+1.2
3,037,771	-		CCNA_02889	0.63	+0.1
3,037,778	+		CCNA_02889	0.64	-0.7
3,037,807	-		CCNA_02889	0.70	+0.6
3,037,862	+		CCNA_02889	0.81	+1.1
3,037,870	-		CCNA_02889	0.82	-0.3
3,037,891	+		CCNA_02889	0.86	+1.3
3,037,892	+		CCNA_02889	0.87	+0.1
3,037,903	+		CCNA_02889	0.89	-0.1
3,037,905	-		CCNA_02889	0.89	+1.6
3,037,921	+				-0.0
3,037,936	+				-0.7
3,037,962	-				+0.2
3,037,973	+				-0.2
3,037,977	+				-1.1
3,038,041	-				-1.4
3,038,076	+				+0.3
3,038,088	+				+0.7
3,038,096	-				-0.9
3,038,097	-				+0.6
3,038,097	-				-0.6
3,038,097	-				+1.1
3,038,116	-				-0.6
3,038,139	-				+0.1
3,038,139	-				-1.0
3,038,148	-				-1.2
3,038,212	-				-0.7
3,038,215	+				-0.3
3,038,223	-				-1.2
3,038,241	+				+0.4
3,038,246	+				-2.2