Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02705

Experiment: PYE with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02704 and CCNA_02705 are separated by 120 nucleotidesCCNA_02705 and CCNA_R0064 are separated by 246 nucleotidesCCNA_R0064 and CCNA_R0065 are separated by 63 nucleotidesCCNA_R0065 and CCNA_R0066 are separated by 98 nucleotides CCNA_02704: CCNA_02704 - NADP-dependent malic enzyme, at 2,859,445 to 2,861,721 _02704 CCNA_02705: CCNA_02705 - cold shock protein CspC, at 2,861,842 to 2,862,051 _02705 CCNA_R0064: CCNA_R0064 - tRNA-Met, at 2,862,298 to 2,862,374 _R0064 CCNA_R0065: CCNA_R0065 - 5S ribosomal RNA, at 2,862,438 to 2,862,555 _R0065 CCNA_R0066: CCNA_R0066 - 23S ribosomal RNA, at 2,862,654 to 2,865,446 _R0066 Position (kb) 2861 2862 2863Strain fitness (log2 ratio) -1 0 1 2 3at 2861.700 kb on + strandat 2861.700 kb on + strandat 2861.706 kb on - strandat 2861.708 kb on - strandat 2861.777 kb on - strandat 2861.794 kb on - strandat 2862.012 kb on - strand, within CCNA_02705at 2862.288 kb on - strandat 2862.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM
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2,861,700 + +0.1
2,861,700 + -0.0
2,861,706 - -1.7
2,861,708 - -0.6
2,861,777 - +0.8
2,861,794 - +0.6
2,862,012 - CCNA_02705 0.81 +0.0
2,862,288 - +2.9
2,862,295 - +2.2

Or see this region's nucleotide sequence