Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02635

Experiment: PYE with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02634 and CCNA_02635 overlap by 1 nucleotidesCCNA_02635 and CCNA_02636 are separated by 91 nucleotidesCCNA_02636 and CCNA_02637 are separated by 101 nucleotides CCNA_02634: CCNA_02634 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 2,785,244 to 2,786,329 _02634 CCNA_02635: CCNA_02635 - cell division protein FtsW, at 2,786,329 to 2,787,501 _02635 CCNA_02636: CCNA_02636 - hypothetical protein, at 2,787,593 to 2,787,991 _02636 CCNA_02637: CCNA_02637 - PAS-family sensor histidine kinase, at 2,788,093 to 2,789,109 _02637 Position (kb) 2786 2787 2788Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2787.546 kb on + strandat 2787.547 kb on + strandat 2787.547 kb on + strandat 2787.555 kb on - strandat 2787.555 kb on - strandat 2787.555 kb on - strandat 2787.580 kb on + strandat 2787.595 kb on + strandat 2787.598 kb on - strandat 2787.627 kb on + strandat 2787.627 kb on - strandat 2787.644 kb on - strand, within CCNA_02636at 2787.646 kb on + strand, within CCNA_02636at 2787.646 kb on + strand, within CCNA_02636at 2787.654 kb on - strand, within CCNA_02636at 2787.654 kb on - strand, within CCNA_02636at 2787.654 kb on - strand, within CCNA_02636at 2787.654 kb on - strand, within CCNA_02636at 2787.659 kb on + strand, within CCNA_02636at 2787.659 kb on + strand, within CCNA_02636at 2787.666 kb on + strand, within CCNA_02636at 2787.671 kb on + strand, within CCNA_02636at 2787.671 kb on + strand, within CCNA_02636at 2787.731 kb on - strand, within CCNA_02636at 2787.749 kb on + strand, within CCNA_02636at 2787.749 kb on + strand, within CCNA_02636at 2787.763 kb on + strand, within CCNA_02636at 2787.780 kb on + strand, within CCNA_02636at 2787.810 kb on - strand, within CCNA_02636at 2787.833 kb on - strand, within CCNA_02636at 2787.856 kb on + strand, within CCNA_02636at 2787.874 kb on + strand, within CCNA_02636at 2787.888 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.916 kb on - strand, within CCNA_02636at 2787.933 kb on - strand, within CCNA_02636at 2787.961 kb on + strandat 2788.035 kb on - strandat 2788.085 kb on + strandat 2788.092 kb on - strandat 2788.120 kb on + strandat 2788.128 kb on - strandat 2788.128 kb on - strandat 2788.128 kb on - strandat 2788.138 kb on - strandat 2788.139 kb on - strandat 2788.145 kb on + strandat 2788.165 kb on + strandat 2788.173 kb on - strandat 2788.183 kb on - strandat 2788.198 kb on - strand, within CCNA_02637at 2788.224 kb on + strand, within CCNA_02637at 2788.224 kb on + strand, within CCNA_02637at 2788.250 kb on + strand, within CCNA_02637at 2788.275 kb on + strand, within CCNA_02637at 2788.275 kb on + strand, within CCNA_02637at 2788.275 kb on + strand, within CCNA_02637at 2788.304 kb on + strand, within CCNA_02637at 2788.319 kb on + strand, within CCNA_02637at 2788.395 kb on - strand, within CCNA_02637at 2788.409 kb on + strand, within CCNA_02637at 2788.414 kb on - strand, within CCNA_02637

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM
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2,787,546 + -2.1
2,787,547 + -0.8
2,787,547 + -1.1
2,787,555 - +0.1
2,787,555 - -0.6
2,787,555 - -0.7
2,787,580 + -0.9
2,787,595 + -0.6
2,787,598 - -0.4
2,787,627 + +2.0
2,787,627 - +0.3
2,787,644 - CCNA_02636 0.13 +0.4
2,787,646 + CCNA_02636 0.13 -0.1
2,787,646 + CCNA_02636 0.13 +0.8
2,787,654 - CCNA_02636 0.15 -1.6
2,787,654 - CCNA_02636 0.15 +2.0
2,787,654 - CCNA_02636 0.15 +0.2
2,787,654 - CCNA_02636 0.15 -0.4
2,787,659 + CCNA_02636 0.17 -0.5
2,787,659 + CCNA_02636 0.17 +0.0
2,787,666 + CCNA_02636 0.18 +2.8
2,787,671 + CCNA_02636 0.20 +0.2
2,787,671 + CCNA_02636 0.20 -0.1
2,787,731 - CCNA_02636 0.35 -0.6
2,787,749 + CCNA_02636 0.39 -0.4
2,787,749 + CCNA_02636 0.39 -0.8
2,787,763 + CCNA_02636 0.43 -0.2
2,787,780 + CCNA_02636 0.47 -0.7
2,787,810 - CCNA_02636 0.54 -0.8
2,787,833 - CCNA_02636 0.60 +0.1
2,787,856 + CCNA_02636 0.66 -0.7
2,787,874 + CCNA_02636 0.70 +0.7
2,787,888 + CCNA_02636 0.74 -0.8
2,787,908 + CCNA_02636 0.79 +1.5
2,787,908 + CCNA_02636 0.79 +0.4
2,787,908 + CCNA_02636 0.79 +0.0
2,787,908 + CCNA_02636 0.79 +3.8
2,787,908 + CCNA_02636 0.79 -0.4
2,787,908 + CCNA_02636 0.79 -0.6
2,787,916 - CCNA_02636 0.81 -1.0
2,787,933 - CCNA_02636 0.85 +0.4
2,787,961 + +0.5
2,788,035 - -1.1
2,788,085 + -1.7
2,788,092 - -1.3
2,788,120 + +0.8
2,788,128 - -0.0
2,788,128 - -2.0
2,788,128 - -0.1
2,788,138 - -0.2
2,788,139 - -0.8
2,788,145 + -0.0
2,788,165 + +1.0
2,788,173 - -0.0
2,788,183 - -1.2
2,788,198 - CCNA_02637 0.10 +0.1
2,788,224 + CCNA_02637 0.13 -0.3
2,788,224 + CCNA_02637 0.13 +0.2
2,788,250 + CCNA_02637 0.15 -0.1
2,788,275 + CCNA_02637 0.18 +0.2
2,788,275 + CCNA_02637 0.18 -0.1
2,788,275 + CCNA_02637 0.18 -0.6
2,788,304 + CCNA_02637 0.21 -0.6
2,788,319 + CCNA_02637 0.22 +0.4
2,788,395 - CCNA_02637 0.30 +1.2
2,788,409 + CCNA_02637 0.31 -1.1
2,788,414 - CCNA_02637 0.32 -2.3

Or see this region's nucleotide sequence