Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02034

Experiment: PYE with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02032 and CCNA_02033 overlap by 31 nucleotidesCCNA_02033 and CCNA_R0045 are separated by 199 nucleotidesCCNA_R0045 and CCNA_R0046 are separated by 64 nucleotidesCCNA_R0046 and CCNA_02034 are separated by 58 nucleotidesCCNA_02034 and CCNA_02035 overlap by 4 nucleotides CCNA_02032: CCNA_02032 - NADH-quinone oxidoreductase chain B, at 2,176,523 to 2,177,125 _02032 CCNA_02033: CCNA_02033 - NADH-quinone oxidoreductase chain A, at 2,177,095 to 2,177,472 _02033 CCNA_R0045: CCNA_R0045 - tRNA-Asp, at 2,177,672 to 2,177,748 _R0045 CCNA_R0046: CCNA_R0046 - tRNA-Asp, at 2,177,813 to 2,177,889 _R0046 CCNA_02034: CCNA_02034 - luciferase-like monooxygenase, at 2,177,948 to 2,178,961 _02034 CCNA_02035: CCNA_02035 - glycosyltransferase, at 2,178,958 to 2,180,166 _02035 Position (kb) 2177 2178 2179Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2177.475 kb on - strandat 2177.498 kb on + strandat 2177.498 kb on + strandat 2177.506 kb on - strandat 2177.506 kb on - strandat 2177.817 kb on - strandat 2177.932 kb on - strandat 2178.004 kb on - strandat 2178.032 kb on - strandat 2178.110 kb on - strand, within CCNA_02034at 2178.207 kb on + strand, within CCNA_02034at 2178.230 kb on + strand, within CCNA_02034at 2178.235 kb on + strand, within CCNA_02034at 2178.238 kb on - strand, within CCNA_02034at 2178.248 kb on - strand, within CCNA_02034at 2178.250 kb on + strand, within CCNA_02034at 2178.250 kb on + strand, within CCNA_02034at 2178.258 kb on - strand, within CCNA_02034at 2178.273 kb on + strand, within CCNA_02034at 2178.273 kb on + strand, within CCNA_02034at 2178.273 kb on + strand, within CCNA_02034at 2178.273 kb on + strand, within CCNA_02034at 2178.276 kb on - strand, within CCNA_02034at 2178.282 kb on + strand, within CCNA_02034at 2178.283 kb on + strand, within CCNA_02034at 2178.287 kb on + strand, within CCNA_02034at 2178.292 kb on + strand, within CCNA_02034at 2178.293 kb on + strand, within CCNA_02034at 2178.293 kb on + strand, within CCNA_02034at 2178.293 kb on + strand, within CCNA_02034at 2178.293 kb on + strand, within CCNA_02034at 2178.293 kb on + strand, within CCNA_02034at 2178.301 kb on - strand, within CCNA_02034at 2178.348 kb on + strand, within CCNA_02034at 2178.348 kb on + strand, within CCNA_02034at 2178.369 kb on - strand, within CCNA_02034at 2178.399 kb on + strand, within CCNA_02034at 2178.414 kb on + strand, within CCNA_02034at 2178.417 kb on - strand, within CCNA_02034at 2178.417 kb on - strand, within CCNA_02034at 2178.449 kb on + strandat 2178.449 kb on + strand, within CCNA_02034at 2178.457 kb on - strand, within CCNA_02034at 2178.457 kb on - strand, within CCNA_02034at 2178.480 kb on + strand, within CCNA_02034at 2178.484 kb on + strand, within CCNA_02034at 2178.528 kb on - strand, within CCNA_02034at 2178.541 kb on - strand, within CCNA_02034at 2178.567 kb on + strand, within CCNA_02034at 2178.700 kb on + strand, within CCNA_02034at 2178.700 kb on + strand, within CCNA_02034at 2178.700 kb on + strand, within CCNA_02034at 2178.708 kb on - strand, within CCNA_02034at 2178.753 kb on + strand, within CCNA_02034at 2178.793 kb on + strand, within CCNA_02034at 2178.801 kb on - strand, within CCNA_02034at 2178.803 kb on + strand, within CCNA_02034at 2178.803 kb on + strand, within CCNA_02034at 2178.805 kb on + strand, within CCNA_02034at 2178.811 kb on - strand, within CCNA_02034at 2178.834 kb on - strand, within CCNA_02034at 2178.835 kb on + strand, within CCNA_02034at 2178.938 kb on - strandat 2178.956 kb on + strandat 2178.964 kb on - strandat 2178.966 kb on - strandat 2178.985 kb on + strandat 2178.993 kb on - strandat 2179.057 kb on + strandat 2179.065 kb on - strandat 2179.080 kb on - strand, within CCNA_02035at 2179.085 kb on - strand, within CCNA_02035at 2179.087 kb on + strand, within CCNA_02035at 2179.090 kb on - strand, within CCNA_02035at 2179.106 kb on + strand, within CCNA_02035at 2179.114 kb on - strand, within CCNA_02035at 2179.148 kb on + strand, within CCNA_02035at 2179.156 kb on - strand, within CCNA_02035at 2179.168 kb on + strand, within CCNA_02035at 2179.234 kb on + strand, within CCNA_02035at 2179.234 kb on + strand, within CCNA_02035at 2179.251 kb on + strand, within CCNA_02035at 2179.327 kb on - strand, within CCNA_02035at 2179.380 kb on + strand, within CCNA_02035at 2179.536 kb on - strand, within CCNA_02035at 2179.547 kb on + strand, within CCNA_02035at 2179.547 kb on + strand, within CCNA_02035at 2179.555 kb on - strand, within CCNA_02035at 2179.555 kb on - strand, within CCNA_02035at 2179.607 kb on - strand, within CCNA_02035at 2179.703 kb on - strand, within CCNA_02035at 2179.794 kb on - strand, within CCNA_02035at 2179.813 kb on - strand, within CCNA_02035at 2179.862 kb on + strand, within CCNA_02035at 2179.870 kb on - strand, within CCNA_02035at 2179.896 kb on - strand, within CCNA_02035at 2179.906 kb on + strand, within CCNA_02035at 2179.924 kb on + strand, within CCNA_02035at 2179.925 kb on + strand, within CCNA_02035at 2179.927 kb on - strand, within CCNA_02035

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM
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2,177,475 - -0.6
2,177,498 + -0.1
2,177,498 + -1.8
2,177,506 - -1.2
2,177,506 - +0.4
2,177,817 - +0.2
2,177,932 - +1.3
2,178,004 - -2.5
2,178,032 - +0.4
2,178,110 - CCNA_02034 0.16 -1.2
2,178,207 + CCNA_02034 0.26 -1.8
2,178,230 + CCNA_02034 0.28 -1.1
2,178,235 + CCNA_02034 0.28 +0.7
2,178,238 - CCNA_02034 0.29 +0.4
2,178,248 - CCNA_02034 0.30 -1.7
2,178,250 + CCNA_02034 0.30 +1.3
2,178,250 + CCNA_02034 0.30 -0.5
2,178,258 - CCNA_02034 0.31 -1.2
2,178,273 + CCNA_02034 0.32 -0.9
2,178,273 + CCNA_02034 0.32 +1.7
2,178,273 + CCNA_02034 0.32 -0.2
2,178,273 + CCNA_02034 0.32 -0.2
2,178,276 - CCNA_02034 0.32 -0.7
2,178,282 + CCNA_02034 0.33 +0.9
2,178,283 + CCNA_02034 0.33 +1.6
2,178,287 + CCNA_02034 0.33 -1.5
2,178,292 + CCNA_02034 0.34 -0.6
2,178,293 + CCNA_02034 0.34 +1.0
2,178,293 + CCNA_02034 0.34 +0.2
2,178,293 + CCNA_02034 0.34 +0.2
2,178,293 + CCNA_02034 0.34 -0.3
2,178,293 + CCNA_02034 0.34 -0.1
2,178,301 - CCNA_02034 0.35 -2.0
2,178,348 + CCNA_02034 0.39 +0.1
2,178,348 + CCNA_02034 0.39 +0.5
2,178,369 - CCNA_02034 0.42 +1.3
2,178,399 + CCNA_02034 0.44 +0.4
2,178,414 + CCNA_02034 0.46 +1.1
2,178,417 - CCNA_02034 0.46 -1.5
2,178,417 - CCNA_02034 0.46 -0.5
2,178,449 + +2.7
2,178,449 + CCNA_02034 0.49 +1.2
2,178,457 - CCNA_02034 0.50 -1.8
2,178,457 - CCNA_02034 0.50 +2.1
2,178,480 + CCNA_02034 0.52 +2.7
2,178,484 + CCNA_02034 0.53 +0.5
2,178,528 - CCNA_02034 0.57 -0.6
2,178,541 - CCNA_02034 0.58 -0.3
2,178,567 + CCNA_02034 0.61 -1.1
2,178,700 + CCNA_02034 0.74 +3.0
2,178,700 + CCNA_02034 0.74 +0.4
2,178,700 + CCNA_02034 0.74 +1.1
2,178,708 - CCNA_02034 0.75 +3.0
2,178,753 + CCNA_02034 0.79 +0.2
2,178,793 + CCNA_02034 0.83 -1.6
2,178,801 - CCNA_02034 0.84 -0.7
2,178,803 + CCNA_02034 0.84 -0.0
2,178,803 + CCNA_02034 0.84 +3.3
2,178,805 + CCNA_02034 0.85 +0.9
2,178,811 - CCNA_02034 0.85 -0.2
2,178,834 - CCNA_02034 0.87 +0.1
2,178,835 + CCNA_02034 0.87 +0.2
2,178,938 - +0.7
2,178,956 + -0.1
2,178,964 - -0.9
2,178,966 - +0.1
2,178,985 + -0.5
2,178,993 - -0.7
2,179,057 + -2.0
2,179,065 - -0.7
2,179,080 - CCNA_02035 0.10 -0.8
2,179,085 - CCNA_02035 0.11 +0.1
2,179,087 + CCNA_02035 0.11 -2.3
2,179,090 - CCNA_02035 0.11 +2.1
2,179,106 + CCNA_02035 0.12 -1.1
2,179,114 - CCNA_02035 0.13 -0.8
2,179,148 + CCNA_02035 0.16 +0.5
2,179,156 - CCNA_02035 0.16 +0.7
2,179,168 + CCNA_02035 0.17 -0.7
2,179,234 + CCNA_02035 0.23 -0.8
2,179,234 + CCNA_02035 0.23 -0.2
2,179,251 + CCNA_02035 0.24 -0.2
2,179,327 - CCNA_02035 0.31 +0.4
2,179,380 + CCNA_02035 0.35 -2.6
2,179,536 - CCNA_02035 0.48 -1.7
2,179,547 + CCNA_02035 0.49 -0.5
2,179,547 + CCNA_02035 0.49 -0.3
2,179,555 - CCNA_02035 0.49 -1.9
2,179,555 - CCNA_02035 0.49 -0.9
2,179,607 - CCNA_02035 0.54 +0.9
2,179,703 - CCNA_02035 0.62 -2.7
2,179,794 - CCNA_02035 0.69 +1.9
2,179,813 - CCNA_02035 0.71 -0.7
2,179,862 + CCNA_02035 0.75 -1.8
2,179,870 - CCNA_02035 0.75 -0.3
2,179,896 - CCNA_02035 0.78 +0.1
2,179,906 + CCNA_02035 0.78 -1.4
2,179,924 + CCNA_02035 0.80 +0.9
2,179,925 + CCNA_02035 0.80 +0.6
2,179,927 - CCNA_02035 0.80 +0.1

Or see this region's nucleotide sequence