Experiment: PYE with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00804 and CCNA_00805 are separated by 229 nucleotides CCNA_00805 and CCNA_00806 overlap by 1 nucleotides CCNA_00806 and CCNA_00807 are separated by 7 nucleotides CCNA_00807 and CCNA_00808 are separated by 93 nucleotides CCNA_00808 and CCNA_00809 are separated by 279 nucleotides
CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859
_00804
CCNA_00805: CCNA_00805 - GTP-binding protein YihA, at 869,089 to 869,778
_00805
CCNA_00806: CCNA_00806 - inner membrane protein translocase component yidC, at 869,778 to 871,625
_00806
CCNA_00807: CCNA_00807 - ribonuclease P protein component, at 871,633 to 872,082
_00807
CCNA_00808: CCNA_00808 - LSU ribosomal protein L34P, at 872,176 to 872,310
_00808
CCNA_00809: CCNA_00809 - quinone oxidoreductase, at 872,590 to 873,585
_00809
Position (kb)
869
870
871
872 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 868.797 kb on + strand, within CCNA_00804 at 868.797 kb on + strand, within CCNA_00804 at 868.797 kb on + strand, within CCNA_00804 at 868.805 kb on - strand, within CCNA_00804 at 868.836 kb on + strand at 868.847 kb on - strand at 868.900 kb on + strand at 868.917 kb on - strand at 868.987 kb on + strand at 868.990 kb on - strand at 868.992 kb on + strand at 868.995 kb on + strand at 869.004 kb on - strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.107 kb on - strand at 869.696 kb on + strand, within CCNA_00805 at 869.704 kb on - strand, within CCNA_00805 at 869.758 kb on - strand at 869.830 kb on - strand at 869.847 kb on - strand at 871.683 kb on - strand, within CCNA_00807 at 871.762 kb on - strand, within CCNA_00807 at 871.762 kb on - strand, within CCNA_00807 at 872.398 kb on + strand at 872.417 kb on + strand at 872.424 kb on - strand at 872.424 kb on - strand at 872.425 kb on - strand at 872.425 kb on - strand at 872.425 kb on - strand at 872.425 kb on - strand at 872.425 kb on - strand at 872.425 kb on - strand at 872.435 kb on + strand at 872.435 kb on + strand at 872.443 kb on - strand at 872.473 kb on + strand at 872.478 kb on + strand at 872.502 kb on + strand at 872.526 kb on - strand at 872.567 kb on + strand at 872.614 kb on - strand at 872.614 kb on - strand at 872.618 kb on + strand at 872.619 kb on - strand at 872.619 kb on - strand at 872.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM remove 868,797 + CCNA_00804 0.87 +0.8 868,797 + CCNA_00804 0.87 +0.6 868,797 + CCNA_00804 0.87 +1.4 868,805 - CCNA_00804 0.89 +1.0 868,836 + +1.3 868,847 - +1.5 868,900 + +0.4 868,917 - +2.4 868,987 + +0.0 868,990 - +0.8 868,992 + -1.8 868,995 + +1.9 869,004 - +0.1 869,009 + -1.3 869,009 + -1.9 869,009 + +0.6 869,009 + +0.0 869,009 + +0.7 869,009 + +1.0 869,009 + +0.6 869,017 - +3.0 869,017 - +2.2 869,017 - +1.2 869,017 - +0.4 869,107 - +2.5 869,696 + CCNA_00805 0.88 -1.8 869,704 - CCNA_00805 0.89 -0.8 869,758 - +0.0 869,830 - +1.8 869,847 - +2.0 871,683 - CCNA_00807 0.11 -1.9 871,762 - CCNA_00807 0.29 -0.8 871,762 - CCNA_00807 0.29 +1.9 872,398 + -2.4 872,417 + -0.6 872,424 - +0.2 872,424 - -0.3 872,425 - -0.1 872,425 - -0.6 872,425 - -2.1 872,425 - -1.8 872,425 - -0.2 872,425 - +0.4 872,435 + -0.4 872,435 + +1.1 872,443 - +2.3 872,473 + -0.8 872,478 + +1.3 872,502 + +0.9 872,526 - +0.2 872,567 + +0.6 872,614 - +0.3 872,614 - +0.7 872,618 + -0.6 872,619 - +0.9 872,619 - +0.2 872,624 - +1.3
Or see this region's nucleotide sequence