Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00552

Experiment: PYE with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00550 and CCNA_00551 are separated by 207 nucleotidesCCNA_00551 and CCNA_00552 are separated by 255 nucleotidesCCNA_00552 and CCNA_00553 overlap by 4 nucleotidesCCNA_00553 and CCNA_00554 are separated by 65 nucleotides CCNA_00550: CCNA_00550 - LacI-family transcriptional regulator, at 567,006 to 568,052 _00550 CCNA_00551: CCNA_00551 - hypothetical protein, at 568,260 to 568,700 _00551 CCNA_00552: CCNA_00552 - cupin superfamily protein, at 568,956 to 569,426 _00552 CCNA_00553: CCNA_00553 - hydroxyacylglutathione hydrolase, at 569,423 to 570,172 _00553 CCNA_00554: CCNA_00554 - methyltransferase, at 570,238 to 571,044 _00554 Position (kb) 568 569 570Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 567.991 kb on - strandat 568.008 kb on + strandat 568.122 kb on + strandat 568.186 kb on + strandat 568.194 kb on - strandat 568.221 kb on - strandat 568.233 kb on + strandat 568.241 kb on + strandat 568.257 kb on + strandat 568.265 kb on - strandat 568.265 kb on - strandat 568.266 kb on - strandat 568.290 kb on - strandat 568.292 kb on - strandat 568.292 kb on - strandat 568.299 kb on - strandat 568.305 kb on + strand, within CCNA_00551at 568.313 kb on - strand, within CCNA_00551at 568.313 kb on - strand, within CCNA_00551at 568.326 kb on + strand, within CCNA_00551at 568.326 kb on + strand, within CCNA_00551at 568.334 kb on - strand, within CCNA_00551at 568.342 kb on + strand, within CCNA_00551at 568.351 kb on - strand, within CCNA_00551at 568.353 kb on + strand, within CCNA_00551at 568.510 kb on + strand, within CCNA_00551at 568.518 kb on - strand, within CCNA_00551at 568.567 kb on + strand, within CCNA_00551at 568.576 kb on + strand, within CCNA_00551at 568.583 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.616 kb on - strand, within CCNA_00551at 568.636 kb on - strand, within CCNA_00551at 568.636 kb on - strand, within CCNA_00551at 568.641 kb on - strand, within CCNA_00551at 568.651 kb on - strand, within CCNA_00551at 568.651 kb on - strand, within CCNA_00551at 568.691 kb on + strandat 568.691 kb on + strandat 568.691 kb on - strandat 568.699 kb on - strandat 568.758 kb on - strandat 568.785 kb on + strandat 568.803 kb on - strandat 568.826 kb on + strandat 568.834 kb on - strandat 568.849 kb on + strandat 568.849 kb on - strandat 568.869 kb on - strandat 568.872 kb on + strandat 568.880 kb on - strandat 568.882 kb on - strandat 568.884 kb on + strandat 568.888 kb on + strandat 568.888 kb on + strandat 568.888 kb on + strandat 568.888 kb on + strandat 568.908 kb on + strandat 568.921 kb on - strandat 569.005 kb on + strand, within CCNA_00552at 569.008 kb on - strand, within CCNA_00552at 569.039 kb on - strand, within CCNA_00552at 569.050 kb on + strand, within CCNA_00552at 569.063 kb on - strand, within CCNA_00552at 569.073 kb on + strand, within CCNA_00552at 569.096 kb on - strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.125 kb on - strand, within CCNA_00552at 569.132 kb on - strand, within CCNA_00552at 569.140 kb on - strand, within CCNA_00552at 569.154 kb on - strand, within CCNA_00552at 569.191 kb on + strand, within CCNA_00552at 569.191 kb on + strand, within CCNA_00552at 569.213 kb on - strand, within CCNA_00552at 569.213 kb on - strand, within CCNA_00552at 569.223 kb on - strand, within CCNA_00552at 569.226 kb on + strand, within CCNA_00552at 569.234 kb on - strand, within CCNA_00552at 569.248 kb on + strand, within CCNA_00552at 569.248 kb on + strand, within CCNA_00552at 569.256 kb on - strand, within CCNA_00552at 569.279 kb on - strand, within CCNA_00552at 569.306 kb on + strand, within CCNA_00552at 569.306 kb on + strand, within CCNA_00552at 569.313 kb on + strand, within CCNA_00552at 569.329 kb on - strand, within CCNA_00552at 569.329 kb on - strand, within CCNA_00552at 569.330 kb on - strand, within CCNA_00552at 569.351 kb on + strand, within CCNA_00552at 569.396 kb on + strandat 569.402 kb on + strandat 569.404 kb on - strandat 569.410 kb on - strandat 569.436 kb on - strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.619 kb on - strand, within CCNA_00553at 569.655 kb on + strand, within CCNA_00553at 569.663 kb on - strand, within CCNA_00553at 569.663 kb on - strand, within CCNA_00553at 569.747 kb on - strand, within CCNA_00553at 569.767 kb on - strand, within CCNA_00553at 569.767 kb on - strand, within CCNA_00553at 569.824 kb on + strand, within CCNA_00553at 569.832 kb on - strand, within CCNA_00553at 569.832 kb on - strand, within CCNA_00553at 569.854 kb on - strand, within CCNA_00553at 569.874 kb on + strand, within CCNA_00553at 569.890 kb on - strand, within CCNA_00553at 569.904 kb on - strand, within CCNA_00553at 569.906 kb on + strand, within CCNA_00553at 569.945 kb on - strand, within CCNA_00553at 569.947 kb on - strand, within CCNA_00553at 570.001 kb on + strand, within CCNA_00553at 570.083 kb on - strand, within CCNA_00553at 570.134 kb on + strandat 570.136 kb on + strandat 570.157 kb on - strandat 570.175 kb on - strandat 570.198 kb on + strandat 570.203 kb on + strandat 570.203 kb on + strandat 570.203 kb on + strandat 570.222 kb on + strandat 570.257 kb on + strandat 570.276 kb on - strandat 570.285 kb on + strandat 570.285 kb on + strandat 570.295 kb on + strandat 570.300 kb on + strandat 570.318 kb on + strandat 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.361 kb on + strand, within CCNA_00554at 570.369 kb on - strand, within CCNA_00554at 570.369 kb on - strand, within CCNA_00554

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM
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567,991 - +0.9
568,008 + +0.5
568,122 + -2.2
568,186 + -1.1
568,194 - +0.4
568,221 - -2.1
568,233 + -1.5
568,241 + +0.0
568,257 + -1.0
568,265 - -1.2
568,265 - +1.5
568,266 - +0.4
568,290 - +0.1
568,292 - +3.3
568,292 - +0.3
568,299 - +0.3
568,305 + CCNA_00551 0.10 +1.7
568,313 - CCNA_00551 0.12 -0.6
568,313 - CCNA_00551 0.12 +0.7
568,326 + CCNA_00551 0.15 -0.3
568,326 + CCNA_00551 0.15 +1.0
568,334 - CCNA_00551 0.17 -0.9
568,342 + CCNA_00551 0.19 -1.3
568,351 - CCNA_00551 0.21 +0.5
568,353 + CCNA_00551 0.21 +2.3
568,510 + CCNA_00551 0.57 +0.6
568,518 - CCNA_00551 0.59 -1.9
568,567 + CCNA_00551 0.70 +0.5
568,576 + CCNA_00551 0.72 +1.8
568,583 + CCNA_00551 0.73 -0.4
568,601 + CCNA_00551 0.77 +2.1
568,601 + CCNA_00551 0.77 +1.1
568,601 + CCNA_00551 0.77 -1.7
568,601 + CCNA_00551 0.77 +0.1
568,609 - CCNA_00551 0.79 +0.4
568,609 - CCNA_00551 0.79 +0.1
568,609 - CCNA_00551 0.79 +1.1
568,609 - CCNA_00551 0.79 -0.4
568,616 - CCNA_00551 0.81 +0.1
568,636 - CCNA_00551 0.85 -1.0
568,636 - CCNA_00551 0.85 +1.9
568,641 - CCNA_00551 0.86 -0.7
568,651 - CCNA_00551 0.89 +1.1
568,651 - CCNA_00551 0.89 -0.3
568,691 + -1.3
568,691 + +1.4
568,691 - -1.3
568,699 - -0.7
568,758 - -0.6
568,785 + -0.8
568,803 - +0.1
568,826 + -1.2
568,834 - +1.7
568,849 + -0.7
568,849 - -1.8
568,869 - +1.1
568,872 + +1.1
568,880 - -0.9
568,882 - +0.4
568,884 + -1.5
568,888 + +0.3
568,888 + -1.4
568,888 + -1.0
568,888 + -0.8
568,908 + -1.7
568,921 - +1.0
569,005 + CCNA_00552 0.10 +0.7
569,008 - CCNA_00552 0.11 +1.0
569,039 - CCNA_00552 0.18 +0.7
569,050 + CCNA_00552 0.20 +0.8
569,063 - CCNA_00552 0.23 +1.0
569,073 + CCNA_00552 0.25 -0.6
569,096 - CCNA_00552 0.30 +0.6
569,117 + CCNA_00552 0.34 +2.3
569,117 + CCNA_00552 0.34 -0.8
569,117 + CCNA_00552 0.34 -0.1
569,125 - CCNA_00552 0.36 +0.3
569,132 - CCNA_00552 0.37 +2.1
569,140 - CCNA_00552 0.39 +0.3
569,154 - CCNA_00552 0.42 +0.7
569,191 + CCNA_00552 0.50 -1.2
569,191 + CCNA_00552 0.50 +1.5
569,213 - CCNA_00552 0.55 -0.5
569,213 - CCNA_00552 0.55 +0.3
569,223 - CCNA_00552 0.57 +0.3
569,226 + CCNA_00552 0.57 -0.7
569,234 - CCNA_00552 0.59 -0.4
569,248 + CCNA_00552 0.62 +0.1
569,248 + CCNA_00552 0.62 +2.1
569,256 - CCNA_00552 0.64 +0.5
569,279 - CCNA_00552 0.69 +0.3
569,306 + CCNA_00552 0.74 +0.7
569,306 + CCNA_00552 0.74 -1.6
569,313 + CCNA_00552 0.76 +1.7
569,329 - CCNA_00552 0.79 -0.0
569,329 - CCNA_00552 0.79 +2.1
569,330 - CCNA_00552 0.79 +1.0
569,351 + CCNA_00552 0.84 +0.7
569,396 + +0.8
569,402 + -0.4
569,404 - -0.5
569,410 - -0.7
569,436 - -0.6
569,438 + -1.0
569,438 + +0.4
569,438 + -0.8
569,438 + -1.5
569,438 + -1.2
569,446 - -0.3
569,446 - -0.7
569,446 - +1.0
569,589 + CCNA_00553 0.22 +0.3
569,589 + CCNA_00553 0.22 +0.7
569,589 + CCNA_00553 0.22 +1.4
569,589 + CCNA_00553 0.22 -2.0
569,597 - CCNA_00553 0.23 +0.4
569,597 - CCNA_00553 0.23 -1.1
569,619 - CCNA_00553 0.26 +2.1
569,655 + CCNA_00553 0.31 +0.0
569,663 - CCNA_00553 0.32 +0.6
569,663 - CCNA_00553 0.32 +0.3
569,747 - CCNA_00553 0.43 -0.2
569,767 - CCNA_00553 0.46 +1.2
569,767 - CCNA_00553 0.46 +0.5
569,824 + CCNA_00553 0.53 +0.8
569,832 - CCNA_00553 0.55 +0.8
569,832 - CCNA_00553 0.55 +1.2
569,854 - CCNA_00553 0.57 +0.6
569,874 + CCNA_00553 0.60 -0.8
569,890 - CCNA_00553 0.62 +0.5
569,904 - CCNA_00553 0.64 +2.4
569,906 + CCNA_00553 0.64 -1.8
569,945 - CCNA_00553 0.70 +0.6
569,947 - CCNA_00553 0.70 -0.9
570,001 + CCNA_00553 0.77 -1.1
570,083 - CCNA_00553 0.88 -2.3
570,134 + -0.2
570,136 + +2.6
570,157 - -0.6
570,175 - +0.7
570,198 + +0.8
570,203 + -0.3
570,203 + -0.5
570,203 + -0.1
570,222 + +1.9
570,257 + +1.0
570,276 - +0.5
570,285 + +0.4
570,285 + +1.6
570,295 + +1.3
570,300 + +1.4
570,318 + +0.3
570,327 + CCNA_00554 0.11 +0.9
570,327 + CCNA_00554 0.11 +0.6
570,327 + CCNA_00554 0.11 +0.4
570,327 + CCNA_00554 0.11 +1.0
570,335 - CCNA_00554 0.12 -0.4
570,335 - CCNA_00554 0.12 -1.8
570,335 - CCNA_00554 0.12 +0.4
570,335 - CCNA_00554 0.12 -0.3
570,361 + CCNA_00554 0.15 +4.0
570,369 - CCNA_00554 0.16 -1.5
570,369 - CCNA_00554 0.16 +2.9

Or see this region's nucleotide sequence