Experiment: soil sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19960 and ABZR87_RS19965 overlap by 1 nucleotides ABZR87_RS19965 and ABZR87_RS19970 are separated by 299 nucleotides ABZR87_RS19970 and ABZR87_RS19975 are separated by 37 nucleotides
ABZR87_RS19960: ABZR87_RS19960 - CusA/CzcA family heavy metal efflux RND transporter, at 854,820 to 857,933
_RS19960
ABZR87_RS19965: ABZR87_RS19965 - efflux RND transporter periplasmic adaptor subunit, at 857,933 to 859,018
_RS19965
ABZR87_RS19970: ABZR87_RS19970 - hypothetical protein, at 859,318 to 859,818
_RS19970
ABZR87_RS19975: ABZR87_RS19975 - thymidine phosphorylase family protein, at 859,856 to 861,403
_RS19975
Position (kb) 857
858
859
860 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.957 kb on + strand, within ABZR87_RS19960 at 856.957 kb on + strand, within ABZR87_RS19960 at 856.957 kb on + strand, within ABZR87_RS19960 at 856.958 kb on - strand, within ABZR87_RS19960 at 857.159 kb on + strand, within ABZR87_RS19960 at 857.160 kb on - strand, within ABZR87_RS19960 at 857.160 kb on - strand, within ABZR87_RS19960 at 857.212 kb on - strand, within ABZR87_RS19960 at 857.241 kb on + strand, within ABZR87_RS19960 at 857.380 kb on + strand, within ABZR87_RS19960 at 857.380 kb on + strand, within ABZR87_RS19960 at 857.381 kb on - strand, within ABZR87_RS19960 at 857.381 kb on - strand, within ABZR87_RS19960 at 857.381 kb on - strand, within ABZR87_RS19960 at 857.488 kb on + strand, within ABZR87_RS19960 at 857.489 kb on - strand, within ABZR87_RS19960 at 857.489 kb on - strand, within ABZR87_RS19960 at 857.623 kb on + strand at 857.671 kb on + strand at 857.671 kb on + strand at 857.671 kb on + strand at 857.672 kb on - strand at 857.810 kb on + strand at 857.842 kb on + strand at 857.842 kb on + strand at 857.842 kb on + strand at 857.842 kb on + strand at 857.843 kb on - strand at 857.843 kb on - strand at 858.038 kb on - strand at 858.111 kb on + strand, within ABZR87_RS19965 at 858.111 kb on + strand, within ABZR87_RS19965 at 858.111 kb on + strand, within ABZR87_RS19965 at 858.111 kb on + strand, within ABZR87_RS19965 at 858.111 kb on + strand, within ABZR87_RS19965 at 858.111 kb on + strand, within ABZR87_RS19965 at 858.112 kb on - strand, within ABZR87_RS19965 at 858.112 kb on - strand, within ABZR87_RS19965 at 858.112 kb on - strand, within ABZR87_RS19965 at 858.112 kb on - strand, within ABZR87_RS19965 at 858.112 kb on - strand, within ABZR87_RS19965 at 858.112 kb on - strand, within ABZR87_RS19965 at 858.342 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.345 kb on - strand, within ABZR87_RS19965 at 858.346 kb on + strand, within ABZR87_RS19965 at 858.346 kb on + strand, within ABZR87_RS19965 at 858.618 kb on + strand, within ABZR87_RS19965 at 858.618 kb on + strand, within ABZR87_RS19965 at 858.619 kb on - strand, within ABZR87_RS19965 at 858.619 kb on - strand, within ABZR87_RS19965 at 858.679 kb on + strand, within ABZR87_RS19965 at 858.679 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 859.075 kb on + strand at 859.089 kb on + strand at 859.089 kb on + strand at 859.089 kb on + strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.312 kb on + strand at 859.744 kb on + strand, within ABZR87_RS19970 at 859.744 kb on + strand, within ABZR87_RS19970 at 859.744 kb on + strand, within ABZR87_RS19970 at 859.799 kb on + strand at 859.800 kb on - strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.906 kb on - strand at 859.917 kb on + strand at 859.917 kb on + strand at 859.917 kb on + strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.955 kb on + strand at 859.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 1; outgrowth in LB remove 856,957 + ABZR87_RS19960 0.69 +0.2 856,957 + ABZR87_RS19960 0.69 +0.6 856,957 + ABZR87_RS19960 0.69 -1.6 856,958 - ABZR87_RS19960 0.69 -1.0 857,159 + ABZR87_RS19960 0.75 -0.2 857,160 - ABZR87_RS19960 0.75 +0.3 857,160 - ABZR87_RS19960 0.75 +0.6 857,212 - ABZR87_RS19960 0.77 -0.5 857,241 + ABZR87_RS19960 0.78 -0.6 857,380 + ABZR87_RS19960 0.82 +0.6 857,380 + ABZR87_RS19960 0.82 +0.3 857,381 - ABZR87_RS19960 0.82 -0.8 857,381 - ABZR87_RS19960 0.82 -0.5 857,381 - ABZR87_RS19960 0.82 -1.1 857,488 + ABZR87_RS19960 0.86 -0.6 857,489 - ABZR87_RS19960 0.86 -0.2 857,489 - ABZR87_RS19960 0.86 +1.0 857,623 + -0.2 857,671 + +0.1 857,671 + -1.3 857,671 + +0.3 857,672 - -1.2 857,810 + +0.5 857,842 + +0.6 857,842 + -0.4 857,842 + -0.4 857,842 + +1.4 857,843 - +0.7 857,843 - -0.3 858,038 - -1.1 858,111 + ABZR87_RS19965 0.16 -1.0 858,111 + ABZR87_RS19965 0.16 +0.8 858,111 + ABZR87_RS19965 0.16 -1.9 858,111 + ABZR87_RS19965 0.16 -0.1 858,111 + ABZR87_RS19965 0.16 -0.2 858,111 + ABZR87_RS19965 0.16 -0.8 858,112 - ABZR87_RS19965 0.16 +0.8 858,112 - ABZR87_RS19965 0.16 -0.1 858,112 - ABZR87_RS19965 0.16 -2.0 858,112 - ABZR87_RS19965 0.16 -1.7 858,112 - ABZR87_RS19965 0.16 -0.5 858,112 - ABZR87_RS19965 0.16 +1.0 858,342 + ABZR87_RS19965 0.38 -2.6 858,344 + ABZR87_RS19965 0.38 +0.0 858,344 + ABZR87_RS19965 0.38 -1.3 858,344 + ABZR87_RS19965 0.38 +0.3 858,344 + ABZR87_RS19965 0.38 +1.2 858,345 - ABZR87_RS19965 0.38 -1.0 858,346 + ABZR87_RS19965 0.38 -0.8 858,346 + ABZR87_RS19965 0.38 -1.5 858,618 + ABZR87_RS19965 0.63 +0.6 858,618 + ABZR87_RS19965 0.63 -0.2 858,619 - ABZR87_RS19965 0.63 -0.0 858,619 - ABZR87_RS19965 0.63 -0.2 858,679 + ABZR87_RS19965 0.69 -0.3 858,679 + ABZR87_RS19965 0.69 +0.7 858,807 + ABZR87_RS19965 0.80 +0.0 858,807 + ABZR87_RS19965 0.80 -0.6 858,807 + ABZR87_RS19965 0.80 -0.2 858,807 + ABZR87_RS19965 0.80 -0.7 858,807 + ABZR87_RS19965 0.80 -0.5 858,807 + ABZR87_RS19965 0.80 -0.4 858,807 + ABZR87_RS19965 0.80 -0.5 858,808 - ABZR87_RS19965 0.81 -0.0 858,808 - ABZR87_RS19965 0.81 +0.3 858,808 - ABZR87_RS19965 0.81 +0.2 858,808 - ABZR87_RS19965 0.81 -0.5 858,808 - ABZR87_RS19965 0.81 -0.6 858,808 - ABZR87_RS19965 0.81 +0.6 858,808 - ABZR87_RS19965 0.81 -0.7 858,808 - ABZR87_RS19965 0.81 -0.5 858,808 - ABZR87_RS19965 0.81 -0.7 858,808 - ABZR87_RS19965 0.81 -0.0 859,075 + +0.8 859,089 + -0.5 859,089 + +0.6 859,089 + -0.9 859,090 - -0.6 859,090 - -0.5 859,090 - -0.8 859,090 - +0.5 859,312 + +1.0 859,744 + ABZR87_RS19970 0.85 +0.5 859,744 + ABZR87_RS19970 0.85 -0.3 859,744 + ABZR87_RS19970 0.85 -1.9 859,799 + +0.4 859,800 - -0.5 859,905 + -0.3 859,905 + -0.4 859,905 + -0.3 859,905 + +0.8 859,905 + -2.3 859,905 + -0.2 859,906 - +2.4 859,917 + -0.6 859,917 + +0.6 859,917 + +0.0 859,918 - +0.6 859,918 - -0.1 859,918 - +0.1 859,918 - -0.0 859,955 + -0.3 859,955 + -0.6
Or see this region's nucleotide sequence